Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1796 ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTCGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGGAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCTCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATGATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA 693 47.33 MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHDGIMCKKEEGHDRTLELFPLHPERR 230
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29078436 29079328 - CcPI632755_08g017960.1 Cco08g1796 186270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1796 230 SUPERFAMILY Homeodomain-like 92 162 IPR009057 -
Cco08g1796 230 Gene3D - 95 162 - -
Cco08g1796 230 ProSiteProfiles 'Homeobox' domain profile. 91 156 IPR001356 GO:0003677(InterPro)
Cco08g1796 230 PANTHER WUSCHEL-RELATED HOMEOBOX 4 3 230 IPR044186 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro)
Cco08g1796 230 CDD homeodomain 96 157 IPR001356 GO:0003677(InterPro)
Cco08g1796 230 MobiDBLite consensus disorder prediction 64 102 - -
Cco08g1796 230 Pfam Homeodomain 96 155 IPR001356 GO:0003677(InterPro)
Cco08g1796 230 SMART HOX_1 93 160 IPR001356 GO:0003677(InterPro)
Cco08g1796 230 FunFam WUSCHEL-related homeobox 4 95 162 - -
Cco08g1796 230 MobiDBLite consensus disorder prediction 153 183 - -
Cco08g1796 230 MobiDBLite consensus disorder prediction 75 102 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1654 Cco-Chr1:29304673 Cco08g1796 Cco-Chr8:29078436 1.30E-23 dispersed
Cco04g1792 Cco-Chr4:32790123 Cco08g1796 Cco-Chr8:29078436 8.80E-20 dispersed
Cco08g1796 Cco-Chr8:29078436 Cco11g0642 Cco-Chr11:6979980 2.10E-21 dispersed
Cco08g1796 Cco-Chr8:29078436 Cco06g1628 Cco-Chr6:26894662 8.90E-25 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59850 PF00046 Homeodomain 9.80E-19 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1796 - - - 0.0