Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1796 | ATGGTATTAAGCATGAAGGTTCATCAGTTTGCACGTGGATTTTGGGACGAACCCTCCCTCTCCCTTGGCTGCAAACGCTTACGCCCTCTTGCCCCTAAACTTCAACAACATAACCAACATCCCACCTCCGATACCACCACCACCACGCTCACCTCTTTTGACCTTAAGACCTTCATCAAACCCGATTGCGGTCCCCGAAAACTCGGTTCCTCCCATGATCATAACAAAGATTCTTCCTCCTCTTCTTCTTCCCTCCAGACAGGAGTGGAAACGCATCCAGGAGGAACACGATGGAATCCAACCCAAGAACAGATAGGGATATTGGAGATGCTTTATAGTAGAGGAATGAGGACTCCTAATGCCCAACAGATTGAACACATCACTGCCCAGCTCGGCAACTATGGGAAGATCGAAGGAAAGAACGTTTTCTATTGGTTTCAGAATCATAAAGCTCGTGAGCGACAGAAACAAAAACGCAATAGTCTTGGTCTTCCACACTCTCCCAGAACTCCTCCCCCTCCTCCCATCATCCCTACTTTCCACACGGCTGAGGATGATAGTCCGTACAAGAGGAAGTGTTTGTACTGGGGGTTTGAGTGTTTGGTAGAAGATCATGATGGTATAATGTGTAAAAAGGAGGAAGGTCATGATAGGACTCTGGAGTTATTTCCTTTGCACCCAGAACGCAGATGA | 693 | 47.33 | MVLSMKVHQFARGFWDEPSLSLGCKRLRPLAPKLQQHNQHPTSDTTTTTLTSFDLKTFIKPDCGPRKLGSSHDHNKDSSSSSSSLQTGVETHPGGTRWNPTQEQIGILEMLYSRGMRTPNAQQIEHITAQLGNYGKIEGKNVFYWFQNHKARERQKQKRNSLGLPHSPRTPPPPPIIPTFHTAEDDSPYKRKCLYWGFECLVEDHDGIMCKKEEGHDRTLELFPLHPERR | 230 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29078436 | 29079328 | - | CcPI632755_08g017960.1 | Cco08g1796 | 186270 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1796 | 230 | SUPERFAMILY | Homeodomain-like | 92 | 162 | IPR009057 | - | |
Cco08g1796 | 230 | Gene3D | - | 95 | 162 | - | - | |
Cco08g1796 | 230 | ProSiteProfiles | 'Homeobox' domain profile. | 91 | 156 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1796 | 230 | PANTHER | WUSCHEL-RELATED HOMEOBOX 4 | 3 | 230 | IPR044186 | GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0009888(PANTHER)|GO:0010067(InterPro)|GO:0010087(InterPro)|GO:0051301(InterPro) | |
Cco08g1796 | 230 | CDD | homeodomain | 96 | 157 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1796 | 230 | MobiDBLite | consensus disorder prediction | 64 | 102 | - | - | |
Cco08g1796 | 230 | Pfam | Homeodomain | 96 | 155 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1796 | 230 | SMART | HOX_1 | 93 | 160 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1796 | 230 | FunFam | WUSCHEL-related homeobox 4 | 95 | 162 | - | - | |
Cco08g1796 | 230 | MobiDBLite | consensus disorder prediction | 153 | 183 | - | - | |
Cco08g1796 | 230 | MobiDBLite | consensus disorder prediction | 75 | 102 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco01g1654 | Cco-Chr1:29304673 | Cco08g1796 | Cco-Chr8:29078436 | 1.30E-23 | dispersed | |
Cco04g1792 | Cco-Chr4:32790123 | Cco08g1796 | Cco-Chr8:29078436 | 8.80E-20 | dispersed | |
Cco08g1796 | Cco-Chr8:29078436 | Cco11g0642 | Cco-Chr11:6979980 | 2.10E-21 | dispersed | |
Cco08g1796 | Cco-Chr8:29078436 | Cco06g1628 | Cco-Chr6:26894662 | 8.90E-25 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59850 | PF00046 | Homeodomain | 9.80E-19 | CL0123 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1796 | - | - | - | 0.0 |