Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1802 ATGGTACTACCATATGCGCCTGATTCTCTTTATTGCTCAGAGGACCACTGGGAGGACGACGACGACCAAGAAGAAAGGGGTTCTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGTCGCTCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCGGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTCCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATAGAAGAACCCCACCTGAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAACCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCAAGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCTTTAACGAAGAAGAAGAACAGAGAATATGGATCGGTGTCTGGGGATGGCGAAACATTTAGAACCCTCTCTTAA 1062 46.23 MVLPYAPDSLYCSEDHWEDDDDQEERGSHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAIEEPHLSVEYDSQLLNILGTDKGNVEECCKLISNTSRRNGNQFKKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKKNREYGSVSGDGETFRTLS 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29125670 29127067 + CcPI632755_08g018020.1 Cco08g1802 186276
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1802 353 CDD CYCLIN_AtCycD-like_rpt1 84 182 - -
Cco08g1802 353 SUPERFAMILY Cyclin-like 54 185 IPR036915 -
Cco08g1802 353 MobiDBLite consensus disorder prediction 1 38 - -
Cco08g1802 353 ProSitePatterns Cyclins signature. 85 116 IPR048258 -
Cco08g1802 353 PANTHER CYCLINS 51 276 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco08g1802 353 CDD CYCLIN_AtCycD-like_rpt2 187 278 - -
Cco08g1802 353 SUPERFAMILY Cyclin-like 169 283 IPR036915 -
Cco08g1802 353 Gene3D - 186 276 - -
Cco08g1802 353 Pfam Cyclin, N-terminal domain 83 185 IPR006671 -
Cco08g1802 353 Gene3D - 70 185 - -
Cco08g1802 353 Pfam Cyclin, C-terminal domain 187 288 IPR004367 -
Cco08g1802 353 FunFam D3-type cyclin 78 185 - -
Cco08g1802 353 SMART Cyclin_C_2 187 313 IPR004367 -
Cco08g1802 353 SMART cyclin_7 90 178 IPR013763 -
Cco08g1802 353 MobiDBLite consensus disorder prediction 322 353 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0687 Cco-Chr2:6898797 Cco08g1802 Cco-Chr8:29125670 1.40E-67 dispersed
Cco04g1608 Cco-Chr4:31411913 Cco08g1802 Cco-Chr8:29125670 7.70E-47 dispersed
Cco05g1187 Cco-Chr5:11027647 Cco08g1802 Cco-Chr8:29125670 3.50E-79 dispersed
Cco08g1802 Cco-Chr8:29125670 Cco09g2265 Cco-Chr9:36928527 1.40E-32 dispersed
Cco04g1463 Cco-Chr4:30072217 Cco08g1802 Cco-Chr8:29125670 2.50E-66 wgd
Cco05g2287 Cco-Chr5:31554252 Cco08g1802 Cco-Chr8:29125670 1.30E-83 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1802 K14505 - csv:101205442 571.237