Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1802 | ATGGTACTACCATATGCGCCTGATTCTCTTTATTGCTCAGAGGACCACTGGGAGGACGACGACGACCAAGAAGAAAGGGGTTCTCATGAGCAACCTTACTCTAATTTAACAACCGAATCGAGTTCTCCGATTCTGGCAGTGGCAGAGCAGGATCTGTTTTGGGAAAACGATGAACTAAGTTCTCTGTTCTCAAGAGAGAAGCCTAATGAACTGTTTAAAACCATTCAGATTGACCCTTCTCTTGCTGTCGCTCGACGAAGCGCCGTCGAGTGGATGCTGAAGGTTAATGCCCATTACTCTTTCTCTGCTCTCACTGCGGTTCTCGCCGTCGATTACTTGGATCGGTTTCTGTCCTGTTTTCATTTTCAAAGAGACAAGCCATGGATGTCTCAGCTTGCTGCGGTTGCTTGTATCTCTCTTGCGGCCAAAGTAGAGGAGACCCAAGTCCCTCTTTTATTGGACCTACAAGTGGAAGACAGTAGATATCTGTTTGAAGCTAAGACCATTAAGAAAATGGAGCTTCTTGTGCTCTCTACGCTCCAATGGCGGATGAATCCTGTTACCCCATTTTCTTTTGTGGATTATATCTCAAGGAGGCTTGGATTCAAGGACCATATCTGCTGGGAAATTCTTTGGCAGTGTGAGCGAACTATTCTCTCTGTTATTTTAGAGTCAGATTTCATGTCCTTTCTTCCTTCTGTAATGGCCACCGCCACAATGCTGCACGTTTTCAAAGCTATAGAAGAACCCCACCTGAGCGTTGAATACGATTCCCAGCTTCTTAACATCCTCGGAACCGACAAGGGGAATGTGGAGGAATGCTGTAAACTGATCTCAAATACATCTAGAAGAAACGGCAACCAATTCAAGAAACGTAAATTTGGGTCGATTCCGGGCAGCCCGAACGGCGTGATGGACGTGTCATTCAGCTACGATAGCTCGAACGACTCGTGGTCAGTGGCTTCGTCGGTTTCATCTTCGCCAGAGCCTTTAACGAAGAAGAAGAACAGAGAATATGGATCGGTGTCTGGGGATGGCGAAACATTTAGAACCCTCTCTTAA | 1062 | 46.23 | MVLPYAPDSLYCSEDHWEDDDDQEERGSHEQPYSNLTTESSSPILAVAEQDLFWENDELSSLFSREKPNELFKTIQIDPSLAVARRSAVEWMLKVNAHYSFSALTAVLAVDYLDRFLSCFHFQRDKPWMSQLAAVACISLAAKVEETQVPLLLDLQVEDSRYLFEAKTIKKMELLVLSTLQWRMNPVTPFSFVDYISRRLGFKDHICWEILWQCERTILSVILESDFMSFLPSVMATATMLHVFKAIEEPHLSVEYDSQLLNILGTDKGNVEECCKLISNTSRRNGNQFKKRKFGSIPGSPNGVMDVSFSYDSSNDSWSVASSVSSSPEPLTKKKNREYGSVSGDGETFRTLS | 353 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29125670 | 29127067 | + | CcPI632755_08g018020.1 | Cco08g1802 | 186276 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1802 | 353 | CDD | CYCLIN_AtCycD-like_rpt1 | 84 | 182 | - | - | |
Cco08g1802 | 353 | SUPERFAMILY | Cyclin-like | 54 | 185 | IPR036915 | - | |
Cco08g1802 | 353 | MobiDBLite | consensus disorder prediction | 1 | 38 | - | - | |
Cco08g1802 | 353 | ProSitePatterns | Cyclins signature. | 85 | 116 | IPR048258 | - | |
Cco08g1802 | 353 | PANTHER | CYCLINS | 51 | 276 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco08g1802 | 353 | CDD | CYCLIN_AtCycD-like_rpt2 | 187 | 278 | - | - | |
Cco08g1802 | 353 | SUPERFAMILY | Cyclin-like | 169 | 283 | IPR036915 | - | |
Cco08g1802 | 353 | Gene3D | - | 186 | 276 | - | - | |
Cco08g1802 | 353 | Pfam | Cyclin, N-terminal domain | 83 | 185 | IPR006671 | - | |
Cco08g1802 | 353 | Gene3D | - | 70 | 185 | - | - | |
Cco08g1802 | 353 | Pfam | Cyclin, C-terminal domain | 187 | 288 | IPR004367 | - | |
Cco08g1802 | 353 | FunFam | D3-type cyclin | 78 | 185 | - | - | |
Cco08g1802 | 353 | SMART | Cyclin_C_2 | 187 | 313 | IPR004367 | - | |
Cco08g1802 | 353 | SMART | cyclin_7 | 90 | 178 | IPR013763 | - | |
Cco08g1802 | 353 | MobiDBLite | consensus disorder prediction | 322 | 353 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0687 | Cco-Chr2:6898797 | Cco08g1802 | Cco-Chr8:29125670 | 1.40E-67 | dispersed | |
Cco04g1608 | Cco-Chr4:31411913 | Cco08g1802 | Cco-Chr8:29125670 | 7.70E-47 | dispersed | |
Cco05g1187 | Cco-Chr5:11027647 | Cco08g1802 | Cco-Chr8:29125670 | 3.50E-79 | dispersed | |
Cco08g1802 | Cco-Chr8:29125670 | Cco09g2265 | Cco-Chr9:36928527 | 1.40E-32 | dispersed | |
Cco04g1463 | Cco-Chr4:30072217 | Cco08g1802 | Cco-Chr8:29125670 | 2.50E-66 | wgd | |
Cco05g2287 | Cco-Chr5:31554252 | Cco08g1802 | Cco-Chr8:29125670 | 1.30E-83 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1802 | K14505 | - | csv:101205442 | 571.237 |