Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1805 ATGTTATTTGGCCCTTCCCTTTCAGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGCCAGAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGAGCTTGAGTGGGATGGACTGATCCCACCAGAATGTCAATCTGACTCATCCATCTTACGATTAAACTCTGAGTGCCAATGGGAGATAGCACAAGAGCCTCTCCATGAGGGGATCGACATCAACAAGACAGTTGGGATTGGCCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAACAGGGCCACATGTAGGTGTTGTTGGTTTAGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACCTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAAAGATGGTGGAGTTGTGCGTGCTCTTTTTTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTTTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTGATGAAGCACGATACTCATAATCTGCCAGCAGTGAGGGCGGCAGAAGATGCAGTTAGCAAGGAGCTACCACACGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAGACACATGAAGGCTTCAACAAAGATCATGGCCATTTTAATACCACAATGGAAATTATTGTGGGGGCTACTTCTCCTAAGAACATATTCATCCTTGCTGGTCAGAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGACCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGACTCATCCATCCTACGATTAAATCTTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATTAACAAGACAGTTGGGATTGGTCCGGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGCCGGGCCAAATGCAGGTGTTGTCGGTTTGGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAGAGAAGGTGGAGTTGTGCGTGCTCTTTTCTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAGCACGATACTCATAATCTGCCAGCAGTGAGGGCAGCAGAAGATGCAGTCAGCAAGGAGCTACCCCACGTGGTGACCATTGACGCTTTGAAATTACCTTTAAACTTTGAAACACATGAAGGCTTCAACAAAGATCATGGTCATTTTAATACCACAATAGAAATTATTGTGGGGGCTACTTCTCCTAAGAACATATTCATCCTCGCTGGCCAAAGCAATATGGCTGGTCGAGGTGGGGTTGAGAAAAATCTAAAGGGAGACCTTGAGTGGGATGGATTGATCCCACCAGAATGTCAATCTGACTCATCCATCCTACGATTAAACCCTGAGCGCCAATGGGAGATAGCACGAGAGCCTCTCCATGAGGGGATCGACATCAACAGGACTGTTGGAATTGGTCCAGGAATGTCATTTGCTCACCAGCTACTAGCTAAAGCCGGGCCAAATGCAGGTGTTGTCGGTTTGGTTCCTTGTGCTAGAGGTGGCACTTTAATTGAACAATGGATTAAAAATCCTAGCAATCCTAATGCAACTTTTTACCAAAACTTCATTGAACGAATCAAAGCATCAGATAGAGAAGGTGGAGTTGTGCGTGCTCTTTTCTGGTTCCAAGGCGAAAGCGATGCAGCTATGAATGACACTGCTATGAGATACAAAGACAACCTAAAGAATTTCTTCACCGACATCCGCAATGATATAAAACCTAGATTTTTACCCATCATTGTTGTTAAAATAGCCCTCTATGACTTTTTTATGAAGCACGATACTCATAATCTGCCAGCAGTTAGGGCAGCAGAAGATGCAGTCAGCAAGGAGCTACCACACGTGGTGACCATTGACGCTTCGAAATTACCTTTAAACTTTAAGACACATGAAGGCTTCAACAAAGATCATGGTCATTTTAATACCACAATGGAAATTACTATAGGTAAATGGTTGGCTGATACCTACCTCTCTCACTATGGTCATTTACTCTAA 2343 43.02 MLFGPSLSGATSPKNIFILAGQSNMAGRGGVEKNLKGELEWDGLIPPECQSDSSILRLNSECQWEIAQEPLHEGIDINKTVGIGPGMSFAHQLLAKTGPHVGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDKDGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFLMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTMEIIVGATSPKNIFILAGQSNMAGRGGVEKNLKGDLEWDGLIPPECQSDSSILRLNLERQWEIAREPLHEGIDINKTVGIGPGMSFAHQLLAKAGPNAGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDREGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDALKLPLNFETHEGFNKDHGHFNTTIEIIVGATSPKNIFILAGQSNMAGRGGVEKNLKGDLEWDGLIPPECQSDSSILRLNPERQWEIAREPLHEGIDINRTVGIGPGMSFAHQLLAKAGPNAGVVGLVPCARGGTLIEQWIKNPSNPNATFYQNFIERIKASDREGGVVRALFWFQGESDAAMNDTAMRYKDNLKNFFTDIRNDIKPRFLPIIVVKIALYDFFMKHDTHNLPAVRAAEDAVSKELPHVVTIDASKLPLNFKTHEGFNKDHGHFNTTMEITIGKWLADTYLSHYGHLL 780
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29144079 29152389 + CcPI632755_08g018050.1 Cco08g1805 186279

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1805 780 PANTHER ESTERASE, PUTATIVE (DUF303)-RELATED 515 776 IPR052940 -
Cco08g1805 780 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 518 773 IPR005181 -
Cco08g1805 780 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 14 261 IPR005181 -
Cco08g1805 780 Pfam Carbohydrate esterase, sialic acid-specific acetylesterase 266 513 IPR005181 -
Cco08g1805 780 SUPERFAMILY SGNH hydrolase 267 507 - -
Cco08g1805 780 Gene3D SGNH hydrolase 265 516 IPR036514 -
Cco08g1805 780 Gene3D SGNH hydrolase 12 264 IPR036514 -
Cco08g1805 780 Gene3D SGNH hydrolase 517 777 IPR036514 -
Cco08g1805 780 SUPERFAMILY SGNH hydrolase 519 777 - -
Cco08g1805 780 SUPERFAMILY SGNH hydrolase 15 261 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1805 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0172 Cco-Chr7:1859194 Cco08g1805 Cco-Chr8:29144079 1.60E-68 dispersed
Cco07g0173 Cco-Chr7:1859713 Cco08g1805 Cco-Chr8:29144079 2.30E-53 dispersed
Cco07g0174 Cco-Chr7:1864488 Cco08g1805 Cco-Chr8:29144079 7.30E-138 dispersed
Cco08g0824 Cco-Chr8:20090947 Cco08g1805 Cco-Chr8:29144079 5.60E-66 dispersed
Cco08g1805 Cco-Chr8:29144079 Cco10g1287 Cco-Chr10:25798278 9.40E-50 dispersed
Cco08g1804 Cco-Chr8:29137164 Cco08g1805 Cco-Chr8:29144079 1.60E-124 tandem
Cco08g1805 Cco-Chr8:29144079 Cco08g1806 Cco-Chr8:29156338 7.30E-103 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g715 . Blo12g00972 . Bda03g00197 . Bpe04g00169 Bma04g00150 . . Cmo12g00515 . . . . . . Cpe07g00500 Bhi04g00386 . . . Hepe03g0729 . Lcy13g2109 Cla08g01593 Cam08g2093 Cec08g1674 Cco08g1805 Clacu08g1778 . Cre08g1561 . . . Cone20ag0211 . Csa04g02447 . Cme03g02074 . . . . . Bpe05g00378 . . . . . Cma12g00572 . . . . . . . . . . . . . . . . . . . Lsi08g01499 Csa02g01923 Chy07g00162 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000128 0 5 0 0 0 8 1 8 7 3 6 7 11 6 8 12 7 1 11 7 5 24 17 10 14 13 7 4 12 0 214