Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1812 ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAGTGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGGTGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTTTGTATCTATCCATCTCTTACCTCGATAGGTTCTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTCGTATTTCTTGCAAAATTTATCATCCGACCAAAGCTGCATCCTTGGGGCCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG 1122 44.21 MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSVAPQKRKAKSQVTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA 373
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29187366 29189177 - CcPI632755_08g018120.1 Cco08g1812 186286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1812 373 Gene3D - 124 237 - -
Cco08g1812 373 PANTHER CYCLINS 86 349 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Cco08g1812 373 PIRSF Cyclin_A_B_D_E 1 367 IPR046965 GO:0016538(InterPro)|GO:0044772(InterPro)
Cco08g1812 373 SUPERFAMILY Cyclin-like 97 236 IPR036915 -
Cco08g1812 373 SMART Cyclin_C_2 239 362 IPR004367 -
Cco08g1812 373 CDD CYCLIN_AtCycA-like_rpt2 239 353 - -
Cco08g1812 373 Pfam Cyclin, C-terminal domain 239 361 IPR004367 -
Cco08g1812 373 ProSitePatterns Cyclins signature. 141 172 IPR048258 -
Cco08g1812 373 Pfam Cyclin, N-terminal domain 108 236 IPR006671 -
Cco08g1812 373 Gene3D - 108 358 - -
Cco08g1812 373 FunFam Cyclin A1 226 358 - -
Cco08g1812 373 SMART cyclin_7 146 230 IPR013763 -
Cco08g1812 373 SMART cyclin_7 243 331 IPR013763 -
Cco08g1812 373 FunFam Mitotic cyclin 6 124 224 - -
Cco08g1812 373 SUPERFAMILY Cyclin-like 239 364 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1451 Cco-Chr8:26366876 Cco08g1812 Cco-Chr8:29187366 1.40E-66 dispersed
Cco08g1812 Cco-Chr8:29187366 Cco09g0233 Cco-Chr9:2091187 9.90E-74 dispersed
Cco02g0726 Cco-Chr2:7477161 Cco08g1812 Cco-Chr8:29187366 1.70E-78 wgd
Cco05g2298 Cco-Chr5:31630106 Cco08g1812 Cco-Chr8:29187366 1.10E-131 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1812 K06627 - csv:101206145 697.967