Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1812 | ATGGCCGCGGCAGATAACTGTGTCCGTGTCACTCGTGCTTCCAAGAAGAGAGCTGCGGCGGCCGCCGTGGTCGAGGGCCAATCCGCCAATAAAAAGCGGGTGGTTCTTGGAGAGCTTTCCAACATTCAGAATGTTAATGGGTCAGTGGCCCCACAGAAGAGGAAGGCCAAGTCCCAGGTGACTAAATGCAAGCCTAAGAAGAGAGCGAAGGTTGGTGTTGCTCCAACGATGAAGACGACGGTTGTTTCTGAAGATAATGATCCCAAGTTGACCGTTGATGATATTTTGGACGACCCAGAAATGAAGGGGCCTTATTCATCGGATATTTATGCTTATCTTCGCAAAATGGAGGCGGAACCAAAAAGAAGGCCGATTCCAAATTACATAGAGAAGATTCAGACGGATGTAAGTGCTAATATGAGAGGGGTTTTGGTTGATTGGATGGTTGAGGTAGCAGAGGAATACAAGCTTGGCTCCGATACTTTGTATCTATCCATCTCTTACCTCGATAGGTTCTTATCAATGAACATCCTCAGTAGGCAAAGGCTCCAATTGTTGGGGGTTTCTTCAATGCTTATTGCCTCGAAGTATGAAGAGATCACCCCTCCACATGTGGAGGATTTCTGTTACATAACAGATAATACTTACAGAAGGGATGAGGTTGTGAAGATGGAAGCTGATATACTTAAGTCTCTGAACTTTGAAATGGGAAATCCTACTGCCAAGACATTCTTAAGGAGGTTCACTAATATTGCTCAAGAAGATTTCAAAATACCAAATCTGCAGTTGGAGTTTCTTGGTTATTACCTTGCTGAGCTTAGCTTATTGGACTACAATTTTGTGAAGTTCTTGCCTTCTTTGGTTGCTGCCTCTGTCGTATTTCTTGCAAAATTTATCATCCGACCAAAGCTGCATCCTTGGGGCCCAAACATGCAACAATACACAGGCTACAAGCCAGCTGATCTAAGGCCATGTGTGATTCTGTTACATGATCTGTATATGGCCAGAAGAGGGGGGTCTCTGATAGCTGTGAGAGAAAAATACAAGCTACATAGGTTCAAATGTGTTGCAATGATGCCTTCACCTCCCGAGATACCGTTTTCATATTTTGAAGAAGCTTAG | 1122 | 44.21 | MAAADNCVRVTRASKKRAAAAAVVEGQSANKKRVVLGELSNIQNVNGSVAPQKRKAKSQVTKCKPKKRAKVGVAPTMKTTVVSEDNDPKLTVDDILDDPEMKGPYSSDIYAYLRKMEAEPKRRPIPNYIEKIQTDVSANMRGVLVDWMVEVAEEYKLGSDTLYLSISYLDRFLSMNILSRQRLQLLGVSSMLIASKYEEITPPHVEDFCYITDNTYRRDEVVKMEADILKSLNFEMGNPTAKTFLRRFTNIAQEDFKIPNLQLEFLGYYLAELSLLDYNFVKFLPSLVAASVVFLAKFIIRPKLHPWGPNMQQYTGYKPADLRPCVILLHDLYMARRGGSLIAVREKYKLHRFKCVAMMPSPPEIPFSYFEEA | 373 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29187366 | 29189177 | - | CcPI632755_08g018120.1 | Cco08g1812 | 186286 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1812 | 373 | Gene3D | - | 124 | 237 | - | - | |
Cco08g1812 | 373 | PANTHER | CYCLINS | 86 | 349 | IPR039361 | GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER) | |
Cco08g1812 | 373 | PIRSF | Cyclin_A_B_D_E | 1 | 367 | IPR046965 | GO:0016538(InterPro)|GO:0044772(InterPro) | |
Cco08g1812 | 373 | SUPERFAMILY | Cyclin-like | 97 | 236 | IPR036915 | - | |
Cco08g1812 | 373 | SMART | Cyclin_C_2 | 239 | 362 | IPR004367 | - | |
Cco08g1812 | 373 | CDD | CYCLIN_AtCycA-like_rpt2 | 239 | 353 | - | - | |
Cco08g1812 | 373 | Pfam | Cyclin, C-terminal domain | 239 | 361 | IPR004367 | - | |
Cco08g1812 | 373 | ProSitePatterns | Cyclins signature. | 141 | 172 | IPR048258 | - | |
Cco08g1812 | 373 | Pfam | Cyclin, N-terminal domain | 108 | 236 | IPR006671 | - | |
Cco08g1812 | 373 | Gene3D | - | 108 | 358 | - | - | |
Cco08g1812 | 373 | FunFam | Cyclin A1 | 226 | 358 | - | - | |
Cco08g1812 | 373 | SMART | cyclin_7 | 146 | 230 | IPR013763 | - | |
Cco08g1812 | 373 | SMART | cyclin_7 | 243 | 331 | IPR013763 | - | |
Cco08g1812 | 373 | FunFam | Mitotic cyclin 6 | 124 | 224 | - | - | |
Cco08g1812 | 373 | SUPERFAMILY | Cyclin-like | 239 | 364 | IPR036915 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1451 | Cco-Chr8:26366876 | Cco08g1812 | Cco-Chr8:29187366 | 1.40E-66 | dispersed | |
Cco08g1812 | Cco-Chr8:29187366 | Cco09g0233 | Cco-Chr9:2091187 | 9.90E-74 | dispersed | |
Cco02g0726 | Cco-Chr2:7477161 | Cco08g1812 | Cco-Chr8:29187366 | 1.70E-78 | wgd | |
Cco05g2298 | Cco-Chr5:31630106 | Cco08g1812 | Cco-Chr8:29187366 | 1.10E-131 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1812 | K06627 | - | csv:101206145 | 697.967 |