Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1818 ATGAAAGAAACCCATTTGGCAACAAGAAGAGCTGGATTAAAGAAATGTTTCAATGAATTACCTTATAGAGATGACCACGAGCATGTTCTTGTTCTAAGTGCACTTTGGCACATAGCCATGGCTCAACCAAATGACAAGGAATATCCTTCTCTTGGTGTGTTCGAATGCATGGCAAATTTGATCCAAAGAGGCCTCAAGGACAAAAATTGGCTTCTTAGAGATCAAAACATTTACATCCCATATTATGCAGCTCATGTGATTGGGTCTTACACTATGCACAAGGCAGAGTTTGCAGAGAAAGCAGTGGAATCAGGAGTGATTCCACCATTAATGGAGCTTTTGAGAGGAAAAATGAGTTGGGTTGAACAAAGAGTTACTGTTAGAGCACTTGGTCATCTTGCTAGTTACAACTCAACTTTTGAAGCACTTGTTGAATATCAAGAAGAAATTGTCAAATCAGCCATGGAGATTGCATCTTCTTGCATTGATCTAGTGTACGAAAGTTTTGTAGGATCAAGTGAAGAAAATAGAGAGAAATATCATAGAGATTTGCTTACAAGAGGTGTTGGTGGGAGAGAAATTGAGGATAGGAAAGCAGAGGAATGGGCTAGTCAACTTCAATGTTGGTGTCTTCATTTGGTCAAATGTTTTGCTTCTAAAGGGAAATGTTTGAATCTCATTTGCAACAATAACCCAATTTTCTTAAAGAATTTGTGTGGAATGTGGGGTGGATTGTCAAATTATACCTCGACGGGTGGAGTTGGGCTCATAAGAATCTTGAGTTATAATAAATCTTCAAGGAAGTTCATTGCTGATTCGAAGGAAATAATTCAGACACTCTGTAATTTGTCTAGATCTTCAGATGATTGGCAATACATTGGCATCGAATGTCTTCTACTCCTTCTCAGGGACCCACAAACCAGGTACAAAATCATCGAAATTGCTGCTTTTTATCTCATAGATTTGGTGGAAATCAGAACACTTGGAGATAGAACAGATATTAATCTAGGTGAATCCATCACACAAGCTCTCCTATCAGATTACAATCAAATGGAAAGAAAACTCTTCAAGAACAATCAAAATCTCCAAAGGGTTTTAAGAGAAATATGGGAGCTTAAAGTGGAGAGGAAAAGGAAAGAGAAATTGTTGAGTGAGGAGAGGCTTCAAGAGAAGAAGGCATTGGTGAATCTCATGAAACAACAAGCAAATGAACTGTTTAGATTGGGAGAAATAAAGGGAGCTTTGAGAAAATACAAAGAAGGATTAGATTTGTGTCCATTGAAGTTGAGAAAACAGAGAATGGTTCTTCATAGCAACAAATCACAATGCCATTTGTTGTTAAGAGAAGCAGATGCAGCCATTAGTGAGTCAACGAGAGCTTTATGTTACTCAAATCCAACAAATTCTCATAGTAAAAGCTTGTGGAGAAGATCACAAGCTTATGACATGAAAGGGTTGGCAAAAGAGAGCTTGATGGATTGCATAATGTTTGTCAATGGTGGAATGAAGATGGATCAGGCAGCCAATAAGAGAATCAAGATTCCATATCATGCAGCTAGAATGATTAGCAAACAGATGGAGGCAACATGGCTTTTTGCAACAGCTAGACTAAAGAAATTGGGTTCAACAAAAACTCAAAACAACCATGACTATATAAACAATTCATATCTCAGGTTCTTTTTGCCACCAAATGATGGAAAATTCAAAGAGGAAAGCTTTTTATGTTGCTGA 1731 37.61 MKETHLATRRAGLKKCFNELPYRDDHEHVLVLSALWHIAMAQPNDKEYPSLGVFECMANLIQRGLKDKNWLLRDQNIYIPYYAAHVIGSYTMHKAEFAEKAVESGVIPPLMELLRGKMSWVEQRVTVRALGHLASYNSTFEALVEYQEEIVKSAMEIASSCIDLVYESFVGSSEENREKYHRDLLTRGVGGREIEDRKAEEWASQLQCWCLHLVKCFASKGKCLNLICNNNPIFLKNLCGMWGGLSNYTSTGGVGLIRILSYNKSSRKFIADSKEIIQTLCNLSRSSDDWQYIGIECLLLLLRDPQTRYKIIEIAAFYLIDLVEIRTLGDRTDINLGESITQALLSDYNQMERKLFKNNQNLQRVLREIWELKVERKRKEKLLSEERLQEKKALVNLMKQQANELFRLGEIKGALRKYKEGLDLCPLKLRKQRMVLHSNKSQCHLLLREADAAISESTRALCYSNPTNSHSKSLWRRSQAYDMKGLAKESLMDCIMFVNGGMKMDQAANKRIKIPYHAARMISKQMEATWLFATARLKKLGSTKTQNNHDYINNSYLRFFLPPNDGKFKEESFLCC 576
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29233458 29235699 + CcPI632755_08g018180.1 Cco08g1818 186292

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1818 576 SUPERFAMILY TPR-like 387 494 IPR011990 GO:0005515(InterPro)
Cco08g1818 576 Coils Coil 348 368 - -
Cco08g1818 576 PANTHER ARM-REPEAT/TETRATRICOPEPTIDE REPEAT (TPR)-LIKE PROTEIN 1 548 - -
Cco08g1818 576 Gene3D - 13 346 IPR011989 -
Cco08g1818 576 Gene3D Tetratricopeptide repeat domain 384 518 IPR011990 GO:0005515(InterPro)
Cco08g1818 576 SUPERFAMILY ARM repeat 32 322 IPR016024 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1818 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1644 Cco-Chr4:31708955 Cco08g1818 Cco-Chr8:29233458 2.30E-144 dispersed
Cco04g1484 Cco-Chr4:30264378 Cco08g1818 Cco-Chr8:29233458 5.10E-173 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g679 . . . . . . . . Cmo05g00153 . . . . . Sed10g1211 . . Bhi04g00400 Tan02g1762 Cmetu03g0353 . Hepe08g1319 . Lcy13g2122 Cla08g01608 Cam08g2109 Cec08g1694 Cco08g1818 Clacu08g1794 . Cre08g1577 . . Cone17ag0873 Cone20ag0221 . . . Cme03g02087 . . . . . . . . . . . Cma12g00585 Cma05g00153 Car05g00133 . Cpe11g00129 . . . . . . . . . . . . . . . Lsi08g01512 Csa02g01908 Chy03g01578 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013300 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 27