Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1821 ATGAAAATGAAGATGCAAACTTGCAGACTTTCACAATGGTTTCTTCTGTTTTTGATTTCATTCTGTTCATGTTCATTTACAGAAGCACAAAAGAGCAATCAGCAGTTGAAGAAGAAGACTTACATAATTCACATGGACAAAAGCAATATGCCACAAGCCTTTGATGATCATTTCCAGTGGTATGATTCTTCTTTGAAATCAGTTTCTGATTCAGCCCAAATGCTTTATTCCTACAACACAGTTGTTCATGGCTTCTCCACAAGATTGACCGTCGAGGAGGCTAAGTTAATAGAAAAGCAAGAAGGAATTCTTGCTGTCATACCTGAAGTGAAGTATGAGCTTCATACCACTCGAACGCCTGAGTTTCTTGGACTTGGGAAAAGTGTTTCTTTCTTCCCGGCGTCGGAGAAGGTCGGGGAAGTGATCATTGGAGTTCTCGACACCGGTGTATGGCCTGAATTGGAGAGCTTCAATGATAGAGGGCTTGGACCAGTACCTGCAAGCTGGAAAGGTGAGTGTGAAGTGGGTAAAAACTTCACCTCATCTAGTTGTAACAGGAAATTGATAGGAGCCAGGTACTTTTCCAAGGGCTATGAAGCAGCCTTTGGTGCAATTGATGAATCCCAGGAGTCGAAATCGCCAAGGGACGACGATGGCCATGGTTCTCACACGTCAACAACCGCTGCAGGATCCGCCGTGACGGGTGCCAGCCTCTTTGGCTTTGCTGCAGGGACTGCAAGAGGAATGGCGGCTGAAGCTCGGGTTGCGACATATAAGGTATGTTGGCTTGGAGGGTGTTTCGGCACTGACATTTTAGCTGCAATGGATAAGGCTGTTGAAGATGGCGTCAATGTTCTATCCACGTCGCTTGGTGGATCCGCCCCTGATTACTACAGAGACAATGTTGCCATTGGAGCCTTCTCTGCTGCAGCTCTGGGAATTTTTGTGTCATGTTCTGCTGGAAATGGTGGCCCATCCTCAGGTAGCTTGTCCAATGTGGCGCCATGGATAACCACGGTCGGCGCCGGGACGCTGGACAGAGACTTCCCAGCATATGTTACTCTTGGAAATGGGAAGAAGATCACAGGGGAGTCGCTCTACAGTGGAAAGCCTTTGCCGAACTCTTTACTACCAATTGTATATGCAGGCAATGCGAGTAACTCAACCAGTGGTAGCCTTTGTTTGAGCAGTACTCTGAATCCGGCGAAGGTGGCCGGAAAAATAGTCGTGTGTGACAGAGGAGGGAACTCTCGAGTTCAGAAAGGGTTGGTGGTAAAAGAGGCCGGTGGTGTAGGGATGATTCTAGCCAACACTGAAACATATGGGGAAGAACAATTAGCCGATGCACATCTCTTGCCGACGGCGGCCGTTGGCCAAAAATCTGGCGACGCAATAAAGAGCTACATCATCTCCGACGCTAACCCAACAGCAACAATCAGCAGCGGCACCACAAGATTAGGCGTTCAACCGTCGCCGCTGGTGGCAGCATTCAGTTCTCGTGGCCCTAATCTCCTCACTCCACATATTCTCAAACCCGATTTGATAGCACCGGGAGTGAACATTCTGGCTGGATGGACCGGCGGCGCTGGACCAACTGGTTTAGACAGCGATAAGCGGCACGTGGCCTTCAACATCATCTCCGGCACATCAATGTCGTGCCCTCACATCAGTGGATTAGCCGCTCTTCTTAAAGCTGCTCATCCAGATTGGAGCCCAGCTGCCATTAGATCTGCCCTAATGACCACAGCATACTCAACATACAAAAATGGCGAAGCGATTCAAGACGTATCCAACGGATCACCGTCGACGCCGTTCGATGTCGGAGCCGGACATGTAAATCCAACGGCTGCCCTTGATCCCGGCCTTGTTTACGATACCACCACCGACGATTACTTCGCCTTCCTCTGTGCCCTAAACTACAGCTCACTTCAAATTAAAGTAATCAGCAAGAAAGACTTCACCTGTAATAGAAACAAGAACTACAAATTGGAGGATCTGAACTACCCGTCATTTGCAGTTCCACTAGAAACCCCTTCCACCAAAGGAGGTGAAGACGTCGCTCCGACCACCGTAAAATATACAAGGACTCTGACCAACAAGGGTGCTCCATCGACGTATAAGGTCTCAGTGACGGCGAAAAGTCCATCGGTGAAGATTGTGGTTGAACCGGAATCATTGAGTTTTGCAGAGGCAAATGAGCAAAAGAGTTATACAGTGACATTCATTGCTTCTCCAATGCCGTCGGGATCTGAGAGCTTTGCTCGTCTGGAATGGTCAGATGGGAAACACATTGTGGGCAGCCCCATAGCTTTCACCTGGACTTAA 2325 48.65 MKMKMQTCRLSQWFLLFLISFCSCSFTEAQKSNQQLKKKTYIIHMDKSNMPQAFDDHFQWYDSSLKSVSDSAQMLYSYNTVVHGFSTRLTVEEAKLIEKQEGILAVIPEVKYELHTTRTPEFLGLGKSVSFFPASEKVGEVIIGVLDTGVWPELESFNDRGLGPVPASWKGECEVGKNFTSSSCNRKLIGARYFSKGYEAAFGAIDESQESKSPRDDDGHGSHTSTTAAGSAVTGASLFGFAAGTARGMAAEARVATYKVCWLGGCFGTDILAAMDKAVEDGVNVLSTSLGGSAPDYYRDNVAIGAFSAAALGIFVSCSAGNGGPSSGSLSNVAPWITTVGAGTLDRDFPAYVTLGNGKKITGESLYSGKPLPNSLLPIVYAGNASNSTSGSLCLSSTLNPAKVAGKIVVCDRGGNSRVQKGLVVKEAGGVGMILANTETYGEEQLADAHLLPTAAVGQKSGDAIKSYIISDANPTATISSGTTRLGVQPSPLVAAFSSRGPNLLTPHILKPDLIAPGVNILAGWTGGAGPTGLDSDKRHVAFNIISGTSMSCPHISGLAALLKAAHPDWSPAAIRSALMTTAYSTYKNGEAIQDVSNGSPSTPFDVGAGHVNPTAALDPGLVYDTTTDDYFAFLCALNYSSLQIKVISKKDFTCNRNKNYKLEDLNYPSFAVPLETPSTKGGEDVAPTTVKYTRTLTNKGAPSTYKVSVTAKSPSVKIVVEPESLSFAEANEQKSYTVTFIASPMPSGSESFARLEWSDGKHIVGSPIAFTWT 774
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29245173 29247497 - CcPI632755_08g018210.1 Cco08g1821 186295
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1821 774 PRINTS Subtilisin serine protease family (S8) signature 547 563 IPR015500 -
Cco08g1821 774 PRINTS Subtilisin serine protease family (S8) signature 216 229 IPR015500 -
Cco08g1821 774 PRINTS Subtilisin serine protease family (S8) signature 138 157 IPR015500 -
Cco08g1821 774 Pfam Subtilase family 140 594 IPR000209 GO:0006508(InterPro)|GO:0008236(InterPro)
Cco08g1821 774 Pfam PA domain 378 465 IPR003137 -
Cco08g1821 774 ProSiteProfiles Serine proteases, subtilase domain profile. 111 618 - -
Cco08g1821 774 FunFam Subtilisin-like protease SBT1.5 140 357 - -
Cco08g1821 774 ProSitePatterns Serine proteases, subtilase family, serine active site. 548 558 IPR023828 -
Cco08g1821 774 FunFam Subtilisin-like protease SBT1.9 29 115 - -
Cco08g1821 774 Pfam Peptidase inhibitor I9 40 115 IPR010259 -
Cco08g1821 774 MobiDBLite consensus disorder prediction 206 228 - -
Cco08g1821 774 CDD PA_subtilisin_like 352 479 - -
Cco08g1821 774 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 24 - -
Cco08g1821 774 SUPERFAMILY Subtilisin-like 114 622 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco08g1821 774 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 23 115 IPR037045 -
Cco08g1821 774 Gene3D - 635 773 - -
Cco08g1821 774 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 40 769 IPR045051 -
Cco08g1821 774 FunFam subtilisin-like protease SBT1.5 346 486 - -
Cco08g1821 774 CDD Peptidases_S8_3 112 584 IPR034197 -
Cco08g1821 774 Gene3D Peptidase S8/S53 domain 141 631 IPR036852 GO:0004252(InterPro)|GO:0006508(InterPro)
Cco08g1821 774 Gene3D - 346 486 - -
Cco08g1821 774 SUPERFAMILY PA domain 399 466 IPR046450 -
Cco08g1821 774 Pfam Fibronectin type-III domain 665 770 IPR041469 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0916 Cco-Chr5:7916287 Cco08g1821 Cco-Chr8:29245173 3.30E-233 dispersed
Cco08g1821 Cco-Chr8:29245173 Cco09g0103 Cco-Chr9:902807 3.50E-214 dispersed
Cco02g0322 Cco-Chr2:2939845 Cco08g1821 Cco-Chr8:29245173 7.70E-171 transposed
Cco04g1491 Cco-Chr4:30320425 Cco08g1821 Cco-Chr8:29245173 8.20E-301 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1821 - - - 0.0