Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1826 ATGAAAGCAGTCTCCAATCTCACTTCCTCACTTCCTCTTTCGCCGTCACCGTCACCGTCACCTTCGCACTACAGGACCACCGCGGTCTTCACTCCTCGTCGACGGATCTCTTCCTCGTCAGCCGTCGGCGGTGCTTTCTCGTCGTGTCGTACACATTTGACTCGGTTTCCACAGCATCGATCTTCGTTTTCGCCTCTGCGATGCAATGTGAGAGAGACGGTGCCGGATCAAGAAATGGCGTCCACCAATGAACAAGACCCACGCATAGCCAAAATCTCCAAGGCCATTCGAGTTATCCCAGATTTTCCTAAACCAGGGATTTTGTTTCAGGATATTACAACTTTGCTTCTTGATACAAAGGCCTTCAAGGACACTATCGATTTGTTCGTGGAGAGGTACAGAGGGAAGGATATCTCTGTCGTCGCTGGAATTGAGGCGAGGGGTTTCATTTTTGGCCCTCCGATAGCTCTGGCTATTGGTGCAAAATTTGTTCCCATGAGAAAACCCAAGAAGTTGCCTGGTGAAGTCATTTCAGAAGAGTACTCTTTAGAGTATGGAACCGACAAAATAGAGATGCATGTAGGAGCTGTTGAAGCTGGGGAACGTGCTCTTGTGATAGATGATCTCATTGCAACTGGGGGAACCTTGTGTGCAGCAATAAGGCTACTTGAGCGAGTTGGCGTTGATGTGGTCGAGTGTGCATGTGTGATTGAGCTGGACGGACTAAAGGGCCGTGAACGATTGGGAGGCAGACCTCTATTCGTTCTAGTTAATGCAGCAGGATGA 786 49.24 MKAVSNLTSSLPLSPSPSPSPSHYRTTAVFTPRRRISSSSAVGGAFSSCRTHLTRFPQHRSSFSPLRCNVRETVPDQEMASTNEQDPRIAKISKAIRVIPDFPKPGILFQDITTLLLDTKAFKDTIDLFVERYRGKDISVVAGIEARGFIFGPPIALAIGAKFVPMRKPKKLPGEVISEEYSLEYGTDKIEMHVGAVEAGERALVIDDLIATGGTLCAAIRLLERVGVDVVECACVIELDGLKGRERLGGRPLFVLVNAAG 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29278141 29281121 + CcPI632755_08g018260.1 Cco08g1826 186300

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1826 261 Pfam Phosphoribosyl transferase domain 123 241 IPR000836 -
Cco08g1826 261 SUPERFAMILY PRTase-like 91 253 IPR029057 -
Cco08g1826 261 Gene3D - 79 260 IPR029057 -
Cco08g1826 261 FunFam Adenine phosphoribosyltransferase 1 80 259 - -
Cco08g1826 261 NCBIfam adenine phosphoribosyltransferase 93 257 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cco08g1826 261 MobiDBLite consensus disorder prediction 1 25 - -
Cco08g1826 261 CDD PRTases_typeI 126 256 IPR000836 -
Cco08g1826 261 Hamap Adenine phosphoribosyltransferase [apt]. 92 259 IPR005764 GO:0003999(InterPro)|GO:0005737(InterPro)|GO:0006168(InterPro)
Cco08g1826 261 PANTHER ADENINE PHOSPHORIBOSYLTRANSFERASE 81 258 IPR050120 GO:0003999(PANTHER)|GO:0005829(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1826 K00759 - - csv:101208231 439.884
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0406 Cco-Chr1:4053076 Cco08g1826 Cco-Chr8:29278141 1.00E-76 dispersed
Cco08g1511 Cco-Chr8:26843209 Cco08g1826 Cco-Chr8:29278141 6.50E-67 dispersed
Cco08g1826 Cco-Chr8:29278141 Cco10g0292 Cco-Chr10:3454983 8.70E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g660 . . . . . . . . Cmo05g00147 Cmo12g00534 . . . Car12g00538 Sed10g1207 . . Bhi04g00409 Tan02g1743 Cmetu03g0036 . Hepe08g1328 . Lcy13g2129 Cla08g01616 Cam08g2118 Cec08g1703 Cco08g1826 Clacu08g1803 . Cre08g1585 . . . Cone20ag0230 . . . Cme03g02097 Blo17g00861 . . . . Bpe05g00045 . Bma05g00056 . . . Cma12g00594 Cma05g00145 Car05g00126 . . . . . . . . . . . . . . . . . Lsi08g01520 Csa02g01900 Chy03g01586 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco01g0406 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cco10g0292 . 30 180 PRT Gene Family AT1G80050 74.8 9.2e-61 229.9
Cco08g1511 . 33 169 PRT Gene Family AT1G80050 81.0 1.6e-57 219.2
Cco08g1826 . 108 257 PRT Gene Family AT1G80050 70.0 6.9e-56 213.8
Cco08g1511 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cco01g0406 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cco08g1826 . 86 223 PRT Gene Family AT5G11160 73.2 2.3e-54 208.8
Cco10g0292 . 8 145 PRT Gene Family AT5G11160 71.0 8.2e-52 200.3
Cco08g1826 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cco01g0406 . 7 180 PRT Gene Family AT1G27450 74.7 9.2e-73 270.0
Cco10g0292 . 1 180 PRT Gene Family AT1G27450 71.7 1.9e-70 262.3
Cco08g1511 . 11 169 PRT Gene Family AT1G27450 73.6 7.1e-65 243.8
Cco11g0396 . 73 557 PRT Gene Family AT2G16570 85.2 5.8e-243 837.0
Cco11g0396 . 73 557 PRT Gene Family AT4G34740 86.0 1.5e-243 839.0
Cco11g0396 . 28 530 PRT Gene Family AT4G38880 70.2 3.1e-198 688.3
Cco08g1826 . 79 260 PRT Gene Family AT1G27450 82.4 1.2e-80 296.2
Cco01g0406 . 7 180 PRT Gene Family AT1G27450 74.7 9.2e-73 270.0
Cco10g0292 . 1 180 PRT Gene Family AT1G27450 71.7 1.9e-70 262.3
Cco08g1511 . 11 169 PRT Gene Family AT1G27450 73.6 7.1e-65 243.8
Cco01g0406 . 30 180 PRT Gene Family AT1G80050 75.5 6.4e-62 233.8
Cco10g0292 . 30 180 PRT Gene Family AT1G80050 74.8 9.2e-61 229.9
Cco08g1511 . 33 169 PRT Gene Family AT1G80050 81.0 1.6e-57 219.2
Cco08g1826 . 108 257 PRT Gene Family AT1G80050 70.0 6.9e-56 213.8
Cco10g0292 . 5 97 PRT Gene Family AT4G22570 87.1 3.0e-44 174.5
Cco01g0406 . 6 104 PRT Gene Family AT4G22570 82.8 5.2e-44 173.7
Cco08g1826 . 84 175 PRT Gene Family AT4G22570 82.6 1.0e-39 159.5
Cco08g1511 . 11 100 PRT Gene Family AT4G22570 78.9 2.1e-37 151.8
Cco10g0292 . 1 96 PRT Gene Family AT4G12440 84.4 4.9e-41 163.7
Cco01g0406 . 1 96 PRT Gene Family AT4G12440 84.4 8.4e-41 162.9
Cco08g1826 . 79 174 PRT Gene Family AT4G12440 79.2 8.7e-38 152.9
Cco08g1511 . 4 99 PRT Gene Family AT4G12440 78.1 3.3e-37 151.0
Cco08g1511 . 1 148 PRT Gene Family AT5G11160 81.1 4.2e-64 241.1
Cco01g0406 . 8 145 PRT Gene Family AT5G11160 75.4 2.1e-55 212.2
Cco08g1826 . 86 223 PRT Gene Family AT5G11160 73.2 2.3e-54 208.8
Cco10g0292 . 8 145 PRT Gene Family AT5G11160 71.0 8.2e-52 200.3
Cco08g0859 . 1 186 PRT Gene Family AT1G71750 65.0 1.8e-69 259.2
Cco09g2361 . 39 491 PRT Gene Family AT1G55810 85.5 2.3e-226 781.6
Cco05g1369 . 19 482 PRT Gene Family AT1G55810 73.5 1.4e-199 692.6
Cco09g2361 . 88 496 PRT Gene Family AT3G27440 76.5 1.6e-184 642.5
Cco05g1369 . 80 482 PRT Gene Family AT3G27440 75.4 8.8e-180 626.7
Cco05g1369 . 1 482 PRT Gene Family AT3G27190 85.7 2.2e-246 848.2
Cco09g2361 . 35 490 PRT Gene Family AT3G27190 75.5 6.8e-208 720.3
Cco04g0972 . 6 288 PRT Gene Family AT3G53900 65.7 6.0e-106 380.9
Cco09g2361 . 25 491 PRT Gene Family AT4G26510 84.7 6.5e-232 800.0
Cco05g1369 . 11 482 PRT Gene Family AT4G26510 75.8 7.0e-210 726.9
Cco05g1369 . 1 482 PRT Gene Family AT5G40870 86.3 1.3e-246 849.0
Cco09g2361 . 35 493 PRT Gene Family AT5G40870 74.2 1.3e-206 716.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000311 4 6 3 5 5 4 7 4 4 4 4 4 7 4 4 7 4 6 1 4 4 4 4 5 4 4 4 10 6 3 139