Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1827 ATGGAGGCTTTGGAAGGCTTTTCCGATGGGGAATGGGAATCTTTCGCCGCCATGTTCTCATCGGAAGAGGTAAATCAGAGCCATATTCCGATGGCTAATTATTCCAATGAGCTTCAATTGCCCAACAATGGCGGCAGTAGTTGGTTCTATTCATTGGATGCTTTTGTTCCTAATTTACAGAGTAATTGTAAACAGGACATAAGGAGCTGCAGTAGCTGCAGTACTACCGATAATTCTAGTGCTTCAGTTTTAATTCCGAATTCGAGTGATTATTTTATGCCAATTGATGAGAGGAATTTTGGGTCTTCGTTTTTTTCTGATGTTTTAATTGAGGAAGTCGATAATGCTCTCGCCGCCGCCGCCGCTGAAGGGGAAGATTCCAGCATGGAGAGATTCATTGAGAATAATGTACTACTGGTTAGCCACCCGCCGCCGTCGCCGGTCGTAGATTCCAACGGTGCCAGAAACAAACCAATTGTATTGAAGAGGAAAGTCAATGAGGGGGACATTTCTGATAATCAGAAGAAAAAATCTCTGATCTCCTCACACGGGAAGAAGAAGAAGAAAACAGAGGAGAGGAGAAGAGGGGAAAGTGTAGAGGAAGAACGGAATACAGGTGGAGCATCAGAAGGACAAAGCTCCATTAGTTACAGTTCCGATCAGGAAGAGAATGGTTCCGAGGAGGGAAACGGCGGCGGCTTCAACAGGAAAAGCAGAGCAAGCAGAGGATCGGCCACCGATCCCCAAAGCCTCTACGCCAGAAAACGAAGAGAAAGAATCAATGAGCGATTGAGAATCTTACAGAAACTTGTTCCCAATGGAACCAAGGTTGATATCAGTACCATGCTTGAAGAAGCAGTTCATTATGTCAAGTTTTTGCAGCTCCAAATCAAGTTATTGAGCTCAGATGAGATGTGGATGTTTGCTCCTTTGGCTTACAATGGAATCGACCTTGGCCTTCACCAGAAGCTCTCTCCATTTCTATCACATTGA 993 44.71 MEALEGFSDGEWESFAAMFSSEEVNQSHIPMANYSNELQLPNNGGSSWFYSLDAFVPNLQSNCKQDIRSCSSCSTTDNSSASVLIPNSSDYFMPIDERNFGSSFFSDVLIEEVDNALAAAAAEGEDSSMERFIENNVLLVSHPPPSPVVDSNGARNKPIVLKRKVNEGDISDNQKKKSLISSHGKKKKKTEERRRGESVEEERNTGGASEGQSSISYSSDQEENGSEEGNGGGFNRKSRASRGSATDPQSLYARKRRERINERLRILQKLVPNGTKVDISTMLEEAVHYVKFLQLQIKLLSSDEMWMFAPLAYNGIDLGLHQKLSPFLSH 330
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29297293 29299676 + CcPI632755_08g018270.1 Cco08g1827 186301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1827 330 Gene3D - 246 309 IPR036638 GO:0046983(InterPro)
Cco08g1827 330 MobiDBLite consensus disorder prediction 205 228 - -
Cco08g1827 330 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 244 293 IPR011598 GO:0046983(InterPro)
Cco08g1827 330 SMART finulus 250 299 IPR011598 GO:0046983(InterPro)
Cco08g1827 330 FunFam Basic helix-loop-helix transcription factor 245 302 - -
Cco08g1827 330 MobiDBLite consensus disorder prediction 162 179 - -
Cco08g1827 330 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 244 306 IPR036638 GO:0046983(InterPro)
Cco08g1827 330 Pfam Helix-loop-helix DNA-binding domain 254 294 IPR011598 GO:0046983(InterPro)
Cco08g1827 330 CDD bHLH_AtIND_like 245 307 - -
Cco08g1827 330 MobiDBLite consensus disorder prediction 162 255 - -
Cco08g1827 330 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 61 313 IPR045843 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0006357(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1827 Cco-Chr8:29297293 Cco10g1016 Cco-Chr10:21824618 1.70E-37 dispersed
Cco03g0877 Cco-Chr3:10562778 Cco08g1827 Cco-Chr8:29297293 1.60E-18 transposed
Cco02g0747 Cco-Chr2:7773699 Cco08g1827 Cco-Chr8:29297293 5.30E-36 wgd
Cco05g2315 Cco-Chr5:31736835 Cco08g1827 Cco-Chr8:29297293 2.60E-41 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59854 PF00010 HLH 9.80E-09 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1827 - - - 0.0