Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1833 ATGCCTTGGAGGGAGGAAGATGGCAGCCGTGGAGGGACTCGAAGTGGCGACTGCCGGTCGGTGGAGCTTCGGATGATCTGCAAATGGAACCGTGGAGGGAGGAAATGTGAGGCGTGGGATGCGATGAGAAGGGGAAGAAATCGAGTTGGGCCAAACCGCCTCCGCAGTTTGGATCTGAAAATAGATAGAGACAGAGAGGAAGATACAGCGTTTTTGCATGAGGGCAAAGATGCTTGGAGAATGTGGAAGGATATTAGAGATAGAGAAGCGGGAAAACTCCGCCCAAATTCTTTCGCAAATCGTGTTAAATCCGATCGAACCAGCTCTTTGCAACTTTCCAATCACAAGGACATTGTCTCTCCCCATAGAGGTTCCGTCAACTCACTTCAGGTTGATTTGACAGAGGGGAGATATTTGTTGTCTGGAGCGTCAGATGCATCAGCTGCTGTTTTTGATATTCAACGTGCAACTCACTCTGAGGGTCTTATTGCAAAGCACCAATGCATTTTTGCAGTTGATAAGCAGCATGAACATGGACATCAATATGCAATATCCTCAGCCATATGGTATCCCGTTGATACTGGATTGTTTGTCACCGGCTCATATGATCATCACATTAATGTCTGGGATACAAATACAACTCAGGTGGTGGTGAATTTTAAATTGCCTGGAAAAGTTTATAGGACAGCCATGTCCTCTTTGGCAACATCACACATGCTGATTGCTGCTGGAACAGAAGATGTTCAAGTTCGCCTTTGTGATATTTCTTCTGGAGCATTTTCTCACACATTATCTGGACATCGTGATGGTGTAATGAGTGTAGCATGGTCAGCTTCTAGCGAGTGGGTTTTGATTACTGGAGGATGTGATGGAGCTATACGCTTTTGGGACATCAGACGAGCTGGATGCTTTCGTGTTCTAGATCAGTCTCAATCTCAGCTTGGGAGACGTCCCCCTATTTCAGGATGGACTGCAAATAAGCTCTCAACATCTAAGTCCCTCTTGGCCAGCCAAGGTTCAAATATGAAATCTCGCATACCTCATAAGAAACTAGCCAATGGAAATGCAACAAAGCCATCAGCCACAGGTAAACTGCCGGCTAAGGGATCCACAAGGCAGAGGCTACACCCAGGGCTTTTGTCCAGTCAGGATCGAGCAGTTTCTCACTATGGTGCTGTCACTGGATTAAAAGTAACTGGAGATGGCATGTACCTTCTCAGTGCAGGTTCTGATTCAAGGTTAAAGTTATGGGACGTTGAATCCGGGTGCAATACACTCGTGAATTATGAAACCATGCGGTTACAGACCAATAAACCATTGCAATTAGCCACATCTGAGGATTCAGCCCTTGTATTTGCCCCATGCATGGCGACTGTTAAAGCATTTGATATGTGGACAGGGAAGACATCCCTGACATTCAGCGGCCACTATGAAGGTGTGAACTGTTGCTGGTATAATTTCCCAGATCAGGAACTGTACACCGGTGGCAATGATAGGCAAATTCTCGTCTGGTCACCATCCCGAAACTCTACCGAACTGTGGACTCGCAGGATTGGGAATCGACTGCAGACAGGGATAACTGGAGTGACTGATTGTCGTCGACAAGGAAGTTTGGTTTCAATGCTGATGCCATCCATCAGACTCTGCTCACCATGTACATAA 1662 46.51 MPWREEDGSRGGTRSGDCRSVELRMICKWNRGGRKCEAWDAMRRGRNRVGPNRLRSLDLKIDRDREEDTAFLHEGKDAWRMWKDIRDREAGKLRPNSFANRVKSDRTSSLQLSNHKDIVSPHRGSVNSLQVDLTEGRYLLSGASDASAAVFDIQRATHSEGLIAKHQCIFAVDKQHEHGHQYAISSAIWYPVDTGLFVTGSYDHHINVWDTNTTQVVVNFKLPGKVYRTAMSSLATSHMLIAAGTEDVQVRLCDISSGAFSHTLSGHRDGVMSVAWSASSEWVLITGGCDGAIRFWDIRRAGCFRVLDQSQSQLGRRPPISGWTANKLSTSKSLLASQGSNMKSRIPHKKLANGNATKPSATGKLPAKGSTRQRLHPGLLSSQDRAVSHYGAVTGLKVTGDGMYLLSAGSDSRLKLWDVESGCNTLVNYETMRLQTNKPLQLATSEDSALVFAPCMATVKAFDMWTGKTSLTFSGHYEGVNCCWYNFPDQELYTGGNDRQILVWSPSRNSTELWTRRIGNRLQTGITGVTDCRRQGSLVSMLMPSIRLCSPCT 553
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29348184 29354954 - CcPI632755_08g018330.1 Cco08g1833 186307

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1833 553 ProSitePatterns Trp-Asp (WD) repeats signature. 284 298 IPR019775 -
Cco08g1833 553 SMART WD40_4 165 210 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 SMART WD40_4 466 505 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 SMART WD40_4 380 418 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 SMART WD40_4 257 297 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 SMART WD40_4 112 152 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 PRINTS G protein beta WD-40 repeat signature 284 298 IPR020472 -
Cco08g1833 553 PRINTS G protein beta WD-40 repeat signature 197 211 IPR020472 -
Cco08g1833 553 PRINTS G protein beta WD-40 repeat signature 405 419 IPR020472 -
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 386 422 - -
Cco08g1833 553 FunFam Transducin/WD40 repeat-like superfamily protein 82 344 - -
Cco08g1833 553 PANTHER DNA EXCISION REPAIR PROTEIN ERCC-8 81 511 IPR042238 GO:0000109(PANTHER)|GO:0000209(PANTHER)|GO:0006283(PANTHER)|GO:0006283(InterPro)|GO:0031464(PANTHER)|GO:0043161(PANTHER)
Cco08g1833 553 Gene3D - 81 508 IPR015943 GO:0005515(InterPro)
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 177 213 - -
Cco08g1833 553 SUPERFAMILY WD40 repeat-like 119 509 IPR036322 GO:0005515(InterPro)
Cco08g1833 553 Pfam WD domain, G-beta repeat 468 505 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 Pfam WD domain, G-beta repeat 388 418 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 Pfam WD domain, G-beta repeat 178 210 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 Pfam WD domain, G-beta repeat 260 297 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 FunFam Excision repair cross-complementation group 8 366 508 - -
Cco08g1833 553 ProSitePatterns Trp-Asp (WD) repeats signature. 405 419 IPR019775 -
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 386 427 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 473 505 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 MobiDBLite consensus disorder prediction 337 375 - -
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 177 219 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats profile. 264 306 IPR001680 GO:0005515(InterPro)
Cco08g1833 553 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 264 299 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1833 K10570 - - csv:101209203 865.914
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g648 . . . . . . . . . Cmo12g00539 . . . Car12g00543 . . Cpe07g00517 Bhi04g00418 Tan02g1734 Cmetu03g0611 . Hepe08g1335 . Lcy13g2133 Cla08g01622 Cam08g2124 Cec08g1709 Cco08g1833 Clacu08g1810 . Cre08g1591 . . Cone17ag0887 Cone20ag0234 . . . Cme03g02103 . . . . . . . . . . . Cma12g00599 . . . . . . . . . . . . . . . . . . . Lsi08g01528 Csa02g01894 Chy03g01592 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007829 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 6 1 36