Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1835 ATGTTCAAAACTAATGGGTTTGTGGGGCTCTCTGTTTCCTTCAAAGCTGTAAAGATTTTTAGTTACAGAGTGCTGGACGAAGCTCGTTTTGCAGAATGGACGCATAGCGACAATTTCAAACCCAGACCCACTTCGCTTGGTTTCTCTCTCTCTCTTTCTCGCCTCTTTCAGCCCAAACCATTTGGTGGAAATATCACGTGCTGTTCATTCCATCACCCTCTGGCTGGTGTTGGCTGCTCCACTGTTTGGAAGGCACTTGGAATTAAATTAATAGAAATTATACACGCCGTTCCCTATACGATATCATTCTGTGACTTCATTTCAGCACAAACTGAGGGGGGAGAAGAATTATTATCTGAGATAGACCATCAAAGTTCTCAATCCATTCTAGAAAAGATGCTGTGCGCTTGTTCAGGAGAGCAATTCAAGTTTGAAGAGCCACCGCAGTCCCCAGAGTCACTTGCGACGAGAGATTTCTCGGCCAGTTGCCTTTCCTCGAGAACTGGAGACTGGGATTTGAAATTTGAAGATTCTCAAGTAGATGAAGTTGAATCCACTTTAAGAGAAGCCCTCTCATTAAACTACGAGGAAGCCCGAGCTTTGCTGGGGAGGCTTGAATATCAAAGAGGAAATTTTGATGCTGCCCTACAGGTATTTCAAGGAATAGACATTAGATCTTTGACGCCAAGAATGGTTAAGGCAATCACTGAAAAGATAAGAGAGTATAAGCCTCGTCCTAAAGGTGACAGTGTCCCCCCTAGTGGTGTAATGTCCATGCATTCTGTTAGCCTACTACTTGAGGCAATTTTACTCAAAGCAAAATCACTGGAGGAACTTGGCAAATATATAGAGTCTGCAAAAGAGTGCAGGATAATTCTTGATACAGTGGAATCAGCTCTGCCTAATGGAATGCCCGAGTGCATTGGTGAAGACTGCAAATTGCAGGAAATGTTTCACAAAGCTTTGGAATTACTGCCTACTTTGTGGATTAAGGGAGGGTATCTTGATGAGGCCATAAATGCCTATCGCCGTGTCCTTGTTAAACCATGGAATCTAGATCCAAACAAGTTGGCTGCCATACAGAAAGAATTGGCTGGGACATTACTCTATGGAGGTGTTGAAGCAAGCCTTCCCCTTAAGTTTCATGTATTTGGTCCAAGAACACCTAAAAACAATGTAGAAGAAGCAGTCCTTCTGTTGCTAATACTCATGAGGAAAGTGGTGATGCAGGAAATAAACTGGGATCCTGAGATTATGAATCATCTGACTTATGCACTTTCTATCACAAGACAATTTGAATTACTCGCTGAGCATGTGGAGCGGATCCTTCCTGGAATTTATAGTCGAGCTGAGAGGTGGTACTTTCTTGCTCTATGTTACAATGCAGCAGGACAGAATGAAGCAGCTTTGAACCTTCTAATGAAAGTTTGCGGTTCCTCTGAAGTAAAGCACAAGCCCCATTTTCATTCTATTTTGTTGCTTGCAAAATTGTGTTCGGAGGATACAAAATATGCACGTGATGGAATTAAATTTGCTCATAGAATGATCAATATGGACAGTGAACAAGGTAAGCATTTCAATCCTGAAGCCTACAAATTTTTAGGTGTTTGCTATGGGAATGCAGCTAGAGCGTCTGTGTCAGACTCTGAAAGAACTCTTTTCCAAAAAGAATCATTGAACTCCCTACGAGTTTCTTCTCTCGATAGGAGGCATGATCCAGAAGTAATGTTCAACATTAGCTTGGAAAATGCGGTGCAGAGAAATCTTGATGTTGCCTTCTACAGTGCAATGGCGTACTCAAATATGGTGGCTGATGGTTCCGGAAGAGGTTGGAAGCTTTTGACCCTCATACTTTCGGCTGAGAAGCGACTCAAGGACGCTGAAAGCATAGTTGATTTTGCTTTGGATGAAGCTGAGAGGATGGACCAATTGGATTTTCTTCGATTGAAAGCTGTCCTAAAAATTGCTCAGGAACAGCCAAAGCAAGCAATAGAAACCTACAGGATCTTGCTAGCACTAATTCAAGGACGAGATGAACTTCAGCTTCAGGCTAAGAACTTTGACCAATCCAAGGACTTGGAACTGGAGGCAGTGGCAGAACGTAACTTGGAACGGGCAGCCTGGCAGGATTTGGCTGCCATATATTCAAAACTTGCTTCCTGGGCGGATGCAGAAATCTGTCTGAACAAAGCCAAGTCATTAGATGTTCATTGCCCCAGAGGTTGGCATACAACAGGCAAGTATTTTGAAGCTCGATCGTTACACAAGGAAGCCCTTGTTTCATTCTCTGTCTCTCTTTCGATCGATCCTGATTATATTCCGAGTATCATCTCAACAGCAGAAGTATTGATGAAATGCGGTAACCAATCACTTCCAATTGCACGTAGCTTGTTGATGAATGCTGTAAGATTGGATCCTACAAGCCATGAAGCATGGTTCAACCTTGGAGTGCTTTCCAAAATGGAAGGTCTGTTGCTACAAGCTGCAGATTTTTTCCAAGCTGCACATGAACTCCAACTATCTGCTCCACTTCAAAGTTTCGTCTAA 2547 42.87 MFKTNGFVGLSVSFKAVKIFSYRVLDEARFAEWTHSDNFKPRPTSLGFSLSLSRLFQPKPFGGNITCCSFHHPLAGVGCSTVWKALGIKLIEIIHAVPYTISFCDFISAQTEGGEELLSEIDHQSSQSILEKMLCACSGEQFKFEEPPQSPESLATRDFSASCLSSRTGDWDLKFEDSQVDEVESTLREALSLNYEEARALLGRLEYQRGNFDAALQVFQGIDIRSLTPRMVKAITEKIREYKPRPKGDSVPPSGVMSMHSVSLLLEAILLKAKSLEELGKYIESAKECRIILDTVESALPNGMPECIGEDCKLQEMFHKALELLPTLWIKGGYLDEAINAYRRVLVKPWNLDPNKLAAIQKELAGTLLYGGVEASLPLKFHVFGPRTPKNNVEEAVLLLLILMRKVVMQEINWDPEIMNHLTYALSITRQFELLAEHVERILPGIYSRAERWYFLALCYNAAGQNEAALNLLMKVCGSSEVKHKPHFHSILLLAKLCSEDTKYARDGIKFAHRMINMDSEQGKHFNPEAYKFLGVCYGNAARASVSDSERTLFQKESLNSLRVSSLDRRHDPEVMFNISLENAVQRNLDVAFYSAMAYSNMVADGSGRGWKLLTLILSAEKRLKDAESIVDFALDEAERMDQLDFLRLKAVLKIAQEQPKQAIETYRILLALIQGRDELQLQAKNFDQSKDLELEAVAERNLERAAWQDLAAIYSKLASWADAEICLNKAKSLDVHCPRGWHTTGKYFEARSLHKEALVSFSVSLSIDPDYIPSIISTAEVLMKCGNQSLPIARSLLMNAVRLDPTSHEAWFNLGVLSKMEGLLLQAADFFQAAHELQLSAPLQSFV 848
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29361028 29365517 + CcPI632755_08g018350.1 Cco08g1835 186309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1835 848 Coils Coil 617 637 - -
Cco08g1835 848 Gene3D Tetratricopeptide repeat domain 389 673 IPR011990 GO:0005515(InterPro)
Cco08g1835 848 Gene3D Tetratricopeptide repeat domain 674 844 IPR011990 GO:0005515(InterPro)
Cco08g1835 848 PANTHER PROTEIN NPG1 125 847 IPR043376 -
Cco08g1835 848 SUPERFAMILY TPR-like 647 839 IPR011990 GO:0005515(InterPro)
Cco08g1835 848 SUPERFAMILY TPR-like 449 677 IPR011990 GO:0005515(InterPro)
Cco08g1835 848 SMART tpr_5 809 842 IPR019734 GO:0005515(InterPro)
Cco08g1835 848 SMART tpr_5 739 772 IPR019734 GO:0005515(InterPro)
Cco08g1835 848 SMART tpr_5 450 483 IPR019734 GO:0005515(InterPro)
Cco08g1835 848 SMART tpr_5 705 738 IPR019734 GO:0005515(InterPro)
Cco08g1835 848 SMART tpr_5 644 677 IPR019734 GO:0005515(InterPro)
Cco08g1835 848 Gene3D Tetratricopeptide repeat domain 144 377 IPR011990 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1835 Cco-Chr8:29361028 Cco11g1713 Cco-Chr11:29955511 1.90E-149 dispersed
Cco08g1835 Cco-Chr8:29361028 Cco07g0122 Cco-Chr7:1313533 1.00E-158 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1835 K21843 - csv:101209448 1334.32