Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1842 ATGAGTAATTTTTCGGGTTCTCATTGTAATAATAGTAGTGATGAATCGGGGTGGACAATGTATTTTGAGGATTCGATTGAGACGGAGGGGAGATTTCGGGGGGGTGTGGTGGATTACGGCGGCGGAGAGAAGGAGGAAGAAGAAGGGGATTTGTCGATGATTTCGGATGCGTCGTCGGGGCCCAGGAATGGGTATTATGAGGAGAATAATTGTCAGTCAGTGCGGCGGAGTGGGGGGAAATCGGCGGCGGGGAAAAGTAAATGGAAACAGGAGATGGGGCGGCGGAACCAACATTCTTGCCTTGATGATACTGCAAGCTCCCCTGTTTTTGGGCTTTCCAAGATCAGAGAGACGAATCCATACAGAAATGAAGGTTTGGTGGAGAATGTAAAAGAATTCTCCCAAACCCATTCTCGAAAACAACATGGGAAGAAACAAACAAGCTTCTTTCAGTCTTCCTCAGTCAAAAAATTGGGCAAGAATGTCTCAGGTAAAAAGCTCTCACCCGGCACCATCGCTGTAAGTGGATGCAATTCCAATTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTACGCCAGATCTATCACTGAGGTATTGGATTTCTTTGGGGTTGATCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTGATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTCGGGGTGATTACGGAAACAAATGCTGAAAAGGCCCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCAGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCACGAGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCATTGAAAAAGAAGCTCGATGAATTTGGTACCTTCCTGGCCAAGGTTATTGCTGGAATTTGTGCACTAGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCTATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCGGAGTACAATGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGGTCTGCCCTCTGCAATGAGTCTACCTTGCAATATAATCCAGACAAGGGAAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGCAATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGCATCCTTTGTAATGAAGATGGTTCCACCAGTGTTTTAACTTCTACTATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCCTTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTCTGTCGCAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACTGGTCATTCTTACACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCACAAGGGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCCGATATTGGAATTGCCATGGGGTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATCGGAGCCTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCGGACACTGGTCCTAAGCTAAATTACTCTGAGTTGATGAATTTTGATACTTGCTCAACCCGAGAGACAACATACTCTTGCAGTATATTCGAGGATAGGCATCCATCGACTGTGTCTATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGACGGTTTTGTATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTGAAGTGCTTTTCACGACGCTCTAGTGGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCAAAGAAGGAATTGCATGACAAGTAG 3591 43.5 MSNFSGSHCNNSSDESGWTMYFEDSIETEGRFRGGVVDYGGGEKEEEEGDLSMISDASSGPRNGYYEENNCQSVRRSGGKSAAGKSKWKQEMGRRNQHSCLDDTASSPVFGLSKIRETNPYRNEGLVENVKEFSQTHSRKQHGKKQTSFFQSSSVKKLGKNVSGKKLSPGTIAVSGCNSNSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGIIFDSTGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRNRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSTIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKGMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDTGPKLNYSELMNFDTCSTRETTYSCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVQPLAVLFSVTPLSWAEWTTVLYLSFPVIIIDEVLKCFSRRSSGTGRLRLPFRFRRHDLLPKKELHDK 1196
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
8 29407488 29435291 + CcPI632755_08g018420.1 Cco08g1842 186316
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1842 1196 FunFam Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 861 1171 - -
Cco08g1842 1196 Pfam Cation transporter/ATPase, N-terminus 197 264 IPR004014 -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 799 809 - -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 537 551 - -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 777 788 - -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 883 902 - -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 365 379 - -
Cco08g1842 1196 PRINTS P-type cation-transporting ATPase superfamily signature 906 918 - -
Cco08g1842 1196 SMART Cation_ATPase_N_a_2 195 269 IPR004014 -
Cco08g1842 1196 CDD P-type_ATPase_SERCA 197 1168 - -
Cco08g1842 1196 PANTHER CALCIUM-TRANSPORTING ATPASE 200 1171 - GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER)
Cco08g1842 1196 Gene3D - 534 927 IPR023214 -
Cco08g1842 1196 FunFam Sodium/potassium-transporting ATPase subunit alpha 776 922 - -
Cco08g1842 1196 FunFam Calcium-transporting ATPase 547 784 - -
Cco08g1842 1196 SUPERFAMILY HAD-like 535 986 IPR036412 -
Cco08g1842 1196 PRINTS H+-transporting ATPase (proton pump) signature 855 871 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1842 1196 PRINTS H+-transporting ATPase (proton pump) signature 914 939 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1842 1196 PRINTS H+-transporting ATPase (proton pump) signature 883 899 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1842 1196 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 544 781 IPR023299 GO:0000166(InterPro)
Cco08g1842 1196 FunFam Calcium-transporting ATPase 304 429 - -
Cco08g1842 1196 FunFam Calcium-transporting ATPase, putative 402 533 - -
Cco08g1842 1196 NCBIfam calcium-translocating P-type ATPase, SERCA-type 245 1038 IPR005782 GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro)
Cco08g1842 1196 ProSitePatterns E1-E2 ATPases phosphorylation site. 539 545 IPR018303 -
Cco08g1842 1196 Pfam Cation transport ATPase (P-type) 607 716 - -
Cco08g1842 1196 MobiDBLite consensus disorder prediction 32 103 - -
Cco08g1842 1196 Gene3D - 247 1168 - -
Cco08g1842 1196 Gene3D - 547 784 IPR023299 GO:0000166(InterPro)
Cco08g1842 1196 Pfam Cation transporting ATPase, C-terminus 967 1166 IPR006068 -
Cco08g1842 1196 MobiDBLite consensus disorder prediction 56 79 - -
Cco08g1842 1196 Pfam haloacid dehalogenase-like hydrolase 774 897 - -
Cco08g1842 1196 NCBIfam HAD-IC family P-type ATPase 853 971 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1842 1196 NCBIfam HAD-IC family P-type ATPase 284 559 IPR001757 GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro)
Cco08g1842 1196 SUPERFAMILY Calcium ATPase, transduction domain A 316 427 IPR008250 -
Cco08g1842 1196 SUPERFAMILY Calcium ATPase, transmembrane domain M 193 1170 IPR023298 -
Cco08g1842 1196 SFLD C1.7: P-type atpase like 518 935 - -
Cco08g1842 1196 SFLD p-type atpase 518 935 IPR044492 -
Cco08g1842 1196 Gene3D - 214 429 - -
Cco08g1842 1196 Pfam E1-E2 ATPase 314 516 - -
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1842 Cco-Chr8:29407488 Cco09g0712 Cco-Chr9:6483548 5.60E-86 dispersed
Cco03g0186 Cco-Chr3:1897562 Cco08g1842 Cco-Chr8:29407488 1.30E-224 transposed
Cco02g0763 Cco-Chr2:8034072 Cco08g1842 Cco-Chr8:29407488 8.90E-06 wgd
Cco04g1518 Cco-Chr4:30587493 Cco08g1842 Cco-Chr8:29407488 6.20E-79 wgd
Cco05g1993 Cco-Chr5:29055313 Cco08g1842 Cco-Chr8:29407488 3.50E-59 wgd
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1842 K05853 - csv:101211345 1900.95