Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1842 | ATGAGTAATTTTTCGGGTTCTCATTGTAATAATAGTAGTGATGAATCGGGGTGGACAATGTATTTTGAGGATTCGATTGAGACGGAGGGGAGATTTCGGGGGGGTGTGGTGGATTACGGCGGCGGAGAGAAGGAGGAAGAAGAAGGGGATTTGTCGATGATTTCGGATGCGTCGTCGGGGCCCAGGAATGGGTATTATGAGGAGAATAATTGTCAGTCAGTGCGGCGGAGTGGGGGGAAATCGGCGGCGGGGAAAAGTAAATGGAAACAGGAGATGGGGCGGCGGAACCAACATTCTTGCCTTGATGATACTGCAAGCTCCCCTGTTTTTGGGCTTTCCAAGATCAGAGAGACGAATCCATACAGAAATGAAGGTTTGGTGGAGAATGTAAAAGAATTCTCCCAAACCCATTCTCGAAAACAACATGGGAAGAAACAAACAAGCTTCTTTCAGTCTTCCTCAGTCAAAAAATTGGGCAAGAATGTCTCAGGTAAAAAGCTCTCACCCGGCACCATCGCTGTAAGTGGATGCAATTCCAATTCCACTCTCGCTTTCAGTGAAGCCACCCATTCGGAAATGGAGGACGCCTACGCCAGATCTATCACTGAGGTATTGGATTTCTTTGGGGTTGATCCATCACAAGGTCTCACAGATGATCAGGTTTTACATCATGCTAAACTTTATGGAAAAAACTTGGTACCTGAGGAGAAAAGGGCCCCATTTTGGAAATTGGTTTTGAAGCAGTTTGATGATTTACTAGTGAAGATATTGATTGTTGCAGCAGTTGTTTCTTTCCTTTTGGCTTTGATAAATGGAGAGACAGGTGTAACAGCATTTTTGGAGCCTTCAGTAATTCTAATGATATTGGCTGCAAATGCAGCAGTCGGGGTGATTACGGAAACAAATGCTGAAAAGGCCCTTGTGGAACTACGGGCATACCAGGCAGATATTGCTACTGTGATGAGAAATGGTTGCTTTTCAATACTTCCAGCTACTGAGCTTGTTCCTGGCGATATTGTAGAAGTTGCTGTGGGGTGCAAAATTCCAGCTGATATGAGAATGATTGAGATGCTGACTAATCAGCTACGTGTTGATCAAGCAATTCTCACAGGTGAGAGTTGCTCTGTTGAAAAAGAGCTCGAGTCCACAACAGCAGCAAATGCTGTATATCAAGACAAGACAAATATTCTTTTTTCTGGTACAGTGGTGGTTGCTGGCAGGGCACGAGCTATTGTGGTAGGAGTTGGTGCAAATACTGCCATGGGCAATATACGAGATTCTATATTGCAAACGGATGATGAGGTGACACCATTGAAAAAGAAGCTCGATGAATTTGGTACCTTCCTGGCCAAGGTTATTGCTGGAATTTGTGCACTAGTATGGATAGTGAACATTGGTCACTTTCGTGATCCTTCACATGGTGGGGTTTTGAGTGGTGCAATACATTACTTCAAGATTGCAGTTGCTCTTGCTGTTGCAGCTATTCCTGAAGGACTTCCTGCTGTTGTCACAACGTGTTTGGCTCTTGGCACCAAACGAATGGCACGTCTGAATGCAATTGTGAGGTCTTTGCCATCTGTTGAGACTTTAGGCTGCACTACTGTTATATGTAGTGACAAGACTGGAACTTTGACTACCAATATGATGTCCGTCTCAAAGATTTGTGTGGTCCATTCTGTTTTGCATGGTCCACAACTTTCGGAGTACAATGTCAGTGGTACAACATATGCTCCTGATGGTATTATTTTTGACAGCACGGGAGTACAGCTTGAGTTTCCAGCTCAATTGCCTTGTATTCTACATATGGCGATGGGGTCTGCCCTCTGCAATGAGTCTACCTTGCAATATAATCCAGACAAGGGAAGCTACGAAAAAATTGGTGAATCAACTGAAGTAGCACTGCGTGTCTTTGCTGAAAAGGTTGGTCTTCCTGGTTTTACTTCTATGCCTTCTGCTCTAAATATGCTCAGCAAGCATGAGCGTGCATCCTATTGTAACCACCATTGGGAGAGCCAGTTCAAAAAGATTTCTGTATTGGAATTTTCTCGCAATCGCAAGATGATGAGCATTTTATGTAGCAGAAACCAGTCACATATCCTATTCTCCAAGGGTGCTCCTGAGAGCATTATTTCAAGATGCTCAAGCATCCTTTGTAATGAAGATGGTTCCACCAGTGTTTTAACTTCTACTATTCGCACTGAACTGGAAGCAAGATTTCAAAGTTTTGCAGGAAATGAAATGCTTAGGTGCCTGGCTATAGCATTCAAATTGCTTCCCTTGAGTCAGCAGAGTTTATCCTTTGATGATGAGCAAGATCTAACATTCATTGGGTTGGTTGGAATGCTTGATCCACCGAGAGAGGAAGTGAGAAATGCTATGCTTTCATGCATGACTGCTGGCATACGTGTTATAGTTGTAACTGGGGACAATAAGTCAACTGCTGAATCACTCTGTCGCAAGATTGGTGCTTTTGATCACTTGGTAGATCTAACTGGTCATTCTTACACTGCTTCCGAATTTGAAGAGCTACCTGCAATGCAACAAACAATGGCATTGCAACGAATGGCACTCTTCACCAGGGTTGAACCTTCTCACAAGGGAATGCTCGTGGAGGCCTTACAACATCAGAATGAAGTGGTTGCTATGACAGGCGATGGCGTCAATGATGCACCTGCACTGAAGAAAGCCGATATTGGAATTGCCATGGGGTCAGGAACAGCAGTTGCCAAGAGTGCTTCTGATATGGTCTTAGCTGATGACAATTTTGCTTCTATTGTTGCGGCTGTTGCAGAGGGCAGAGCTATTTACAATAATACTAAGCAGTTCATCAGATACATGATCTCTTCAAATATTGGTGAAGTAGTCTGTATATTTGTGGCAGCTGTTCTTGGAATACCAGAGACACTTGCCCCTGTGCAACTTCTTTGGGTCAACTTGGTCACTGATGGGTTGCCTGCAACTGCAATTGGATTTAACAAGCAAGACTCTGATGTAATGAAAGCTAAGCCTCGAAAGGTGAATGAAGCTGTGGTGACTGGGTGGTTGTTCTTTCGTTATTTGGTAATCGGAGCCTATGTTGGTCTTGCAACAATTGCTGGCTTCATATGGTGGTTTATATACTCGGACACTGGTCCTAAGCTAAATTACTCTGAGTTGATGAATTTTGATACTTGCTCAACCCGAGAGACAACATACTCTTGCAGTATATTCGAGGATAGGCATCCATCGACTGTGTCTATGACTGTGCTTGTTGTTGTCGAGATGTTCAATGCTTTAAATAATCTAAGTGAAAATCAATCTCTTCTTGTTATCCCTCCCTGGAGTAATTTATGGCTCGTTGCCTCCATTGTCATAACCATGATCCTTCACATGCTTATTATGTATGTGCAACCTCTCGCTGTTCTTTTCTCTGTAACGCCATTATCTTGGGCTGAATGGACGACGGTTTTGTATCTTTCATTTCCTGTTATAATTATTGATGAGGTACTGAAGTGCTTTTCACGACGCTCTAGTGGCACTGGCAGGTTGAGGCTTCCATTCAGATTCAGAAGGCATGATTTACTTCCAAAGAAGGAATTGCATGACAAGTAG | 3591 | 43.5 | MSNFSGSHCNNSSDESGWTMYFEDSIETEGRFRGGVVDYGGGEKEEEEGDLSMISDASSGPRNGYYEENNCQSVRRSGGKSAAGKSKWKQEMGRRNQHSCLDDTASSPVFGLSKIRETNPYRNEGLVENVKEFSQTHSRKQHGKKQTSFFQSSSVKKLGKNVSGKKLSPGTIAVSGCNSNSTLAFSEATHSEMEDAYARSITEVLDFFGVDPSQGLTDDQVLHHAKLYGKNLVPEEKRAPFWKLVLKQFDDLLVKILIVAAVVSFLLALINGETGVTAFLEPSVILMILAANAAVGVITETNAEKALVELRAYQADIATVMRNGCFSILPATELVPGDIVEVAVGCKIPADMRMIEMLTNQLRVDQAILTGESCSVEKELESTTAANAVYQDKTNILFSGTVVVAGRARAIVVGVGANTAMGNIRDSILQTDDEVTPLKKKLDEFGTFLAKVIAGICALVWIVNIGHFRDPSHGGVLSGAIHYFKIAVALAVAAIPEGLPAVVTTCLALGTKRMARLNAIVRSLPSVETLGCTTVICSDKTGTLTTNMMSVSKICVVHSVLHGPQLSEYNVSGTTYAPDGIIFDSTGVQLEFPAQLPCILHMAMGSALCNESTLQYNPDKGSYEKIGESTEVALRVFAEKVGLPGFTSMPSALNMLSKHERASYCNHHWESQFKKISVLEFSRNRKMMSILCSRNQSHILFSKGAPESIISRCSSILCNEDGSTSVLTSTIRTELEARFQSFAGNEMLRCLAIAFKLLPLSQQSLSFDDEQDLTFIGLVGMLDPPREEVRNAMLSCMTAGIRVIVVTGDNKSTAESLCRKIGAFDHLVDLTGHSYTASEFEELPAMQQTMALQRMALFTRVEPSHKGMLVEALQHQNEVVAMTGDGVNDAPALKKADIGIAMGSGTAVAKSASDMVLADDNFASIVAAVAEGRAIYNNTKQFIRYMISSNIGEVVCIFVAAVLGIPETLAPVQLLWVNLVTDGLPATAIGFNKQDSDVMKAKPRKVNEAVVTGWLFFRYLVIGAYVGLATIAGFIWWFIYSDTGPKLNYSELMNFDTCSTRETTYSCSIFEDRHPSTVSMTVLVVVEMFNALNNLSENQSLLVIPPWSNLWLVASIVITMILHMLIMYVQPLAVLFSVTPLSWAEWTTVLYLSFPVIIIDEVLKCFSRRSSGTGRLRLPFRFRRHDLLPKKELHDK | 1196 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29407488 | 29435291 | + | CcPI632755_08g018420.1 | Cco08g1842 | 186316 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1842 | 1196 | FunFam | Sarcoplasmic/endoplasmic reticulum calcium ATPase 1 | 861 | 1171 | - | - | |
| Cco08g1842 | 1196 | Pfam | Cation transporter/ATPase, N-terminus | 197 | 264 | IPR004014 | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 799 | 809 | - | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 537 | 551 | - | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 777 | 788 | - | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 883 | 902 | - | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 365 | 379 | - | - | |
| Cco08g1842 | 1196 | PRINTS | P-type cation-transporting ATPase superfamily signature | 906 | 918 | - | - | |
| Cco08g1842 | 1196 | SMART | Cation_ATPase_N_a_2 | 195 | 269 | IPR004014 | - | |
| Cco08g1842 | 1196 | CDD | P-type_ATPase_SERCA | 197 | 1168 | - | - | |
| Cco08g1842 | 1196 | PANTHER | CALCIUM-TRANSPORTING ATPASE | 200 | 1171 | - | GO:0005388(PANTHER)|GO:0006874(PANTHER)|GO:0015662(PANTHER)|GO:0016021(PANTHER)|GO:0034220(PANTHER)|GO:0070588(PANTHER) | |
| Cco08g1842 | 1196 | Gene3D | - | 534 | 927 | IPR023214 | - | |
| Cco08g1842 | 1196 | FunFam | Sodium/potassium-transporting ATPase subunit alpha | 776 | 922 | - | - | |
| Cco08g1842 | 1196 | FunFam | Calcium-transporting ATPase | 547 | 784 | - | - | |
| Cco08g1842 | 1196 | SUPERFAMILY | HAD-like | 535 | 986 | IPR036412 | - | |
| Cco08g1842 | 1196 | PRINTS | H+-transporting ATPase (proton pump) signature | 855 | 871 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1842 | 1196 | PRINTS | H+-transporting ATPase (proton pump) signature | 914 | 939 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1842 | 1196 | PRINTS | H+-transporting ATPase (proton pump) signature | 883 | 899 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1842 | 1196 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 544 | 781 | IPR023299 | GO:0000166(InterPro) | |
| Cco08g1842 | 1196 | FunFam | Calcium-transporting ATPase | 304 | 429 | - | - | |
| Cco08g1842 | 1196 | FunFam | Calcium-transporting ATPase, putative | 402 | 533 | - | - | |
| Cco08g1842 | 1196 | NCBIfam | calcium-translocating P-type ATPase, SERCA-type | 245 | 1038 | IPR005782 | GO:0005388(InterPro)|GO:0006816(InterPro)|GO:0016020(InterPro) | |
| Cco08g1842 | 1196 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 539 | 545 | IPR018303 | - | |
| Cco08g1842 | 1196 | Pfam | Cation transport ATPase (P-type) | 607 | 716 | - | - | |
| Cco08g1842 | 1196 | MobiDBLite | consensus disorder prediction | 32 | 103 | - | - | |
| Cco08g1842 | 1196 | Gene3D | - | 247 | 1168 | - | - | |
| Cco08g1842 | 1196 | Gene3D | - | 547 | 784 | IPR023299 | GO:0000166(InterPro) | |
| Cco08g1842 | 1196 | Pfam | Cation transporting ATPase, C-terminus | 967 | 1166 | IPR006068 | - | |
| Cco08g1842 | 1196 | MobiDBLite | consensus disorder prediction | 56 | 79 | - | - | |
| Cco08g1842 | 1196 | Pfam | haloacid dehalogenase-like hydrolase | 774 | 897 | - | - | |
| Cco08g1842 | 1196 | NCBIfam | HAD-IC family P-type ATPase | 853 | 971 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1842 | 1196 | NCBIfam | HAD-IC family P-type ATPase | 284 | 559 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco08g1842 | 1196 | SUPERFAMILY | Calcium ATPase, transduction domain A | 316 | 427 | IPR008250 | - | |
| Cco08g1842 | 1196 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 193 | 1170 | IPR023298 | - | |
| Cco08g1842 | 1196 | SFLD | C1.7: P-type atpase like | 518 | 935 | - | - | |
| Cco08g1842 | 1196 | SFLD | p-type atpase | 518 | 935 | IPR044492 | - | |
| Cco08g1842 | 1196 | Gene3D | - | 214 | 429 | - | - | |
| Cco08g1842 | 1196 | Pfam | E1-E2 ATPase | 314 | 516 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1842 | Cco-Chr8:29407488 | Cco09g0712 | Cco-Chr9:6483548 | 5.60E-86 | dispersed | |
| Cco03g0186 | Cco-Chr3:1897562 | Cco08g1842 | Cco-Chr8:29407488 | 1.30E-224 | transposed | |
| Cco02g0763 | Cco-Chr2:8034072 | Cco08g1842 | Cco-Chr8:29407488 | 8.90E-06 | wgd | |
| Cco04g1518 | Cco-Chr4:30587493 | Cco08g1842 | Cco-Chr8:29407488 | 6.20E-79 | wgd | |
| Cco05g1993 | Cco-Chr5:29055313 | Cco08g1842 | Cco-Chr8:29407488 | 3.50E-59 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1842 | K05853 | - | csv:101211345 | 1900.95 |