Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1849 ATGGAGAAAATATGCGTTGCTGTTCGATTGAGGCCATCTGTTTCTGAAGATTCAGTCCATGGAACCTATTGGAAGATTGACAACAATCGGATTTCGCTTCACAGACCTCACGGCACGCCAATCTCCGGCAATTCCTATGCTTTTGATCATGTTTTGGATGAAAGCTGCAGTAACGGAAGTGTTTACGAACTTGTTGTTAGAGATATCATTCATGCTGCTGTTGAAGGTTTTAATGGAACCGCTTTCGCTTATGGACAGACCAGTAGTGGTAAAACTTTTACCATGAATGGTTCTGAAAGTGACGCTGGGGTTATTCATAGAGCAGTGAAAGACGTGTTTGAAAAAATTCACATGACGTCAGATCGTGAATTTCTGATTAGAGTTTCCTACATGGAAATTTATAACGAAGAAATTAATGATCTATTTGCAGTTGAGAACAATAAATTGCCAATTCATGAGAGCCTAGAGCGTGGGATATTTGTTGCAGGTCTCAAGGAGGAAATTGTCACTAATGCTGATCAAGTATTAAAGCTCATCAAGCAGGGTGAAGTAAATAAACATTTTGGTGAAACGAATATGAATGCAAGGAGCAGTAGATCGCACACAATATTCAGAATGGTAATTGAAAGCAAGGGGAAGGACATCGGTGATAATTTGAGTGCTGATTCGATACGTGTTTCTGTATTGAATTTGGTAGACCTAGCTGGGTCTGAGCGTATTGCTAAGACTGGAGCTGAAGGAGCACGTTTGAAAGAAGGCAAGCATATCAATAAGAGTTTAATGATTCTTGGGAATGTTATTAATAAGCTGAGCGAGGGGGTTAGGCAGAGGGGACACATTCCGTATCGAGACAGTAAGCTAACCCGCATACTCCAACCAGCTCTAGGTGGTAATGCTAAAACTTCAATAATATGCACTATAGCTCCAGAAGAGGTACATATAGAAGAAACAAAAGGAACTCTCCAGTTTGCTAGCAGAGCAAAGCGCATCACCAATTGTGTTCAAGTGAATGAGATTTTGACTGATGCAGCGTTATTGAAGCGTCAGAATCAAGAGATAGAGGAACTGCGTAGAAAACTTCAGTTCGAACTTGAACGTGAAAAGTTGCAAATGGAACTTCAAGAGGAGAGGAACTCACACAAAGAACGTGATCAACGTATCAGGGAGCAACAAATGAAAATTGAAAGTCTCAATAGTCTTGTCAATCTTTCGGAGTCTGTACAAAACTCCAATCAAAGTCGAGAACAAGATTCTGTGAAAAACACTCTCAGGGAAGATTTTAGTGGCAGTTGTAATAAAAGCCATGAAGATGGATTCGCAACACCTTGTTTCAAGGCACCTCCTAATGCTTTTGTCGCCAAGCGATCTGATTACTCTATGCCTCCTGAGTTTAGTCCTCTTCCAGATGCTTTCAGTAATGTTGCTGATGAGGATGCTTGGTTGAAACTGAATAAAGGTTTTGTAGCGGACCTTGATTCACTTCAAACGACTCCTGCGAGAAAAGCGCAGTCGTTTCCGTTCAATGAAACAACTCCTGGTAAGGGTCTCTCCAATGAGAACCATAAACAAGAGATTCAAAATCTTGAGAGACAACTGGAGAATGCCATCATGGAGAAAAATAGGCTTCAGGAAAAGCATGAGGAGCAAATTCTTGTCAACGAGAAATTGATGGTAGAGATATCAGAGCTTCAACAACAAGCACGAATAATCAGAGAACTTCCACGAAAGATGTCCAATTCTTTGGCGATGTGTAAAGATGTTTACATGGAAATTCTATCTACCCTAAAGAGTGTCAAAGATGACAAGAAACCCTCAACTGTAAAATTGCTGTCAAGCTCCAGTGAAATTGGAACGTGCCTTTTTACTACTCTGGAGGCTCATTTAACTGCAACCATGAATTGGCAAAGTTATCTAGCAATGAATGATTCACCTATTCAAGAACAATATGATCTACTTCGTGCGAGCATGAATGGCATAATGGAATCTCTCGTGTCATCAAAAGCATCAATATTTGATAATGAGCAAGCATCTGATCCCTTAAGCACTCATCAGTGTAAGGGATGTGCTGAAGACGACTTTTGGAAGGAAAGTTTGAGTACTGAACTTAATGATGTTAGGAAAACATGTCACGACCTCGAGAAAGAGCTAGTATCCAACAACCAACGTTTAGAGTTATCCAAGCAACAATATGACAACTTAGAAAGAGAGTTCAAGCTTATGAAAGATGAAAGAGACTCTTTACGTAAAATGGTTTCTGAATCTGTTCAGAAACTAGAGCTGGAGAAGGAGCGGAAAGAAACTGCATTAAAGGAACTGAACACTGAACTCCAGAAACGAAGAGATCTAGGGGAAGGAATTAAGCGATTTAGTGCAGCATTTGCCTCTCGACACAAGTCATTCATGTCATTCAACAGTGAGCTAAAGTCCAAAACTGAGGAACTGAAGACCCATAATCGGGTTGTCATTCCTATTCCTGTTCCCAAATCTCTTGGGTTGAATGTTGAAATTTCAACGAGCGGAGAAAATGGAGCCCGGCCCAATATTGGAAATGTAGCCCAACCATTTCAGGGTTTTGTCGAAAAGCTATCTTCGCCTTCGTTGCGGCTAGGGTTTCGGAACAGAATCTTTGAAGATATTCTACACCCAAGAGGTAGGGTTTTCTATATAAATTGCGACATTGAAGGTGATCATCTGAATTGCAGTGCCCTTCCACCGCCCCAAGCTTTCTTCCTTTGCGAATGGCTTCTCAACTTTCCCATAATTCTTTTGTTTTTTGATTGA 2781 40.7 MEKICVAVRLRPSVSEDSVHGTYWKIDNNRISLHRPHGTPISGNSYAFDHVLDESCSNGSVYELVVRDIIHAAVEGFNGTAFAYGQTSSGKTFTMNGSESDAGVIHRAVKDVFEKIHMTSDREFLIRVSYMEIYNEEINDLFAVENNKLPIHESLERGIFVAGLKEEIVTNADQVLKLIKQGEVNKHFGETNMNARSSRSHTIFRMVIESKGKDIGDNLSADSIRVSVLNLVDLAGSERIAKTGAEGARLKEGKHINKSLMILGNVINKLSEGVRQRGHIPYRDSKLTRILQPALGGNAKTSIICTIAPEEVHIEETKGTLQFASRAKRITNCVQVNEILTDAALLKRQNQEIEELRRKLQFELEREKLQMELQEERNSHKERDQRIREQQMKIESLNSLVNLSESVQNSNQSREQDSVKNTLREDFSGSCNKSHEDGFATPCFKAPPNAFVAKRSDYSMPPEFSPLPDAFSNVADEDAWLKLNKGFVADLDSLQTTPARKAQSFPFNETTPGKGLSNENHKQEIQNLERQLENAIMEKNRLQEKHEEQILVNEKLMVEISELQQQARIIRELPRKMSNSLAMCKDVYMEILSTLKSVKDDKKPSTVKLLSSSSEIGTCLFTTLEAHLTATMNWQSYLAMNDSPIQEQYDLLRASMNGIMESLVSSKASIFDNEQASDPLSTHQCKGCAEDDFWKESLSTELNDVRKTCHDLEKELVSNNQRLELSKQQYDNLEREFKLMKDERDSLRKMVSESVQKLELEKERKETALKELNTELQKRRDLGEGIKRFSAAFASRHKSFMSFNSELKSKTEELKTHNRVVIPIPVPKSLGLNVEISTSGENGARPNIGNVAQPFQGFVEKLSSPSLRLGFRNRIFEDILHPRGRVFYINCDIEGDHLNCSALPPPQAFFLCEWLLNFPIILLFFD 926
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29485241 29491356 + CcPI632755_08g018490.1 Cco08g1849 186323

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1849 926 Coils Coil 336 386 - -
Cco08g1849 926 FunFam Centromere-associated protein E 1 361 - -
Cco08g1849 926 Coils Coil 553 573 - -
Cco08g1849 926 Coils Coil 695 750 - -
Cco08g1849 926 SMART kinesin_4 1 338 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 Coils Coil 518 549 - -
Cco08g1849 926 PRINTS Kinesin heavy chain signature 76 97 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 PRINTS Kinesin heavy chain signature 191 208 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 PRINTS Kinesin heavy chain signature 280 301 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 PRINTS Kinesin heavy chain signature 228 246 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 CDD KISc_CENP_E 3 330 - -
Cco08g1849 926 ProSiteProfiles Kinesin motor domain profile. 3 330 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 ProSitePatterns Kinesin motor domain signature. 227 238 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco08g1849 926 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 3 362 IPR027417 -
Cco08g1849 926 Coils Coil 755 782 - -
Cco08g1849 926 Pfam Kinesin motor domain 30 330 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco08g1849 926 PANTHER CENTROMERE PROTEIN E 2 815 IPR027640 GO:0003777(InterPro)|GO:0007018(InterPro)
Cco08g1849 926 Gene3D Kinesin motor domain 1 362 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1849 K11498 - - csv:101212317 1380.54
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0498 Cco-Chr2:4620805 Cco08g1849 Cco-Chr8:29485241 1.50E-71 dispersed
Cco03g0190 Cco-Chr3:1948141 Cco08g1849 Cco-Chr8:29485241 1.80E-64 dispersed
Cco05g0257 Cco-Chr5:2026393 Cco08g1849 Cco-Chr8:29485241 1.90E-52 dispersed
Cco08g0913 Cco-Chr8:21036120 Cco08g1849 Cco-Chr8:29485241 7.00E-54 dispersed
Cco08g1849 Cco-Chr8:29485241 Cco10g1604 Cco-Chr10:29323418 7.30E-118 dispersed
Cco08g1849 Cco-Chr8:29485241 Cco11g0411 Cco-Chr11:4253588 3.30E-78 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g616 . . . . . . . . . Cmo12g00547 . . . Car12g00552 . . Cpe07g00529 Bhi04g00452 . . . . . . Cla08g01638 Cam08g2142 Cec08g1729 Cco08g1849 Clacu08g1830 . Cre08g1613 . . Cone17ag0899 Cone20ag0241 . . . Cme03g02122 . . . . . . . . . . . Cma12g00609 . . . . . . . . . . . . . . . . . . . Lsi08g01544 Csa02g01874 Chy03g01612 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012517 0 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 0 1 1 28