Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1850 ATGGATTTTGGAGTTGTGGGTTTAGATGGGGTGGTGGTGGGTTCATCAGACACATCAGGTTTTTCTTCTCTTGCTGCTTCTTCAGACGCTGAAACTAAGCAGAAATGGTACGAGTCTGGTTGTGGATTTATACATAAGCAGGAGCGATCTGCCAGTGTTGCTGCAGCGGAAGATGAGGATGATGATGAAGATTTGAGAACCTCTAAACTTCTTAAAACTTCTGATCACTTGTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTAAAGGATTGCTTTTTCCCCACAGACACTCTGCTTCTTTGCTCAGATCTAATTCCCCTTTCTTTCTCTCTGATTCTAATCAACACCATCACCAAATGCTCTGTTTTTCATCTCCCAAAACAGAGTCTTTTCCTCTCGATAAGACCTCTTCTCTTTCTCCTGTTTCCCCTAATTTCTACCATTCCTCCGCCCCTAGAAATCCAGGTTGCAATTATGGAGGTTTGAACGGCGGAAGCATGCACGGCGGTGCTTTTATTGGTGTTAGAGCTCCATTCACTCCATCCCAATGGATGGAGCTCGAACATCAGGCTTTGATCTACAAATACATTACTGCTAATGTCCCTGTTCCTTCTAATTTACTTATTCCCATCAGGAAGGCCCTCGAATCTGCTGGCTTTTCGACATTTTCCGGCGGATTTCTCCGCCCCGGCACCGTGGGATGGGGATCTTTCAATATGGGGTTTTCGAATAGTAGTGATCCTGAACCTGGACGGTGCCGTCGAACCGACGGGAAGAAATGGCGGTGCTCAAGAGACGCAGTTGCCGATCAGAAATACTGTGAACGGCATATGAACAGAGGCCGCCATCGTTCAAGAAAGCCTGTGGAAGGCCAAGCCGGCCACTCCCACTCCGTCGCCGGAGCTTCCAATATTACCACTGCCGCCACCGCTACAAAGCTGATTTCTTCTTCAGCTTCTACTGCGGCAGTGTCCTGCAACGGCTCCCCCAACAACCTCTCCTTTGCTAGCCAACACTTCAAGAACCTCCACCGCGCCGGATCTCATCCGCCTCCCTCCTCCGCTGCCGCTCAAATCAACAGAATGTTAATAACGAACAAAGAGAATGGTGGCATTGGGTTGAATGATTCAACAACATCTGGTCTTTCTGTGTTGTCTCCTTCGATTGACATAAAACAATCCAAACAGCTTGCATTTGCAATCCAGAAACAGCAAAACCCTTTTGAAGAATCTACCAGAGGAGCAGAGTTTGGGCTTGTTTCTTCCAGTTTTCTCTTTGGCTCCTCACAAAAGACCTCTTCTTTGATGAACTTCAGAGGTTTCAACCCTTCAGAGGGCATTACCAGTACTCAAGAAGCAGCTGAAACCCAGCAGTCACTTCGCCAATTCTTCAACAATTGGCCCAAGAACCAATCTGATAGCTCTTCAGTTTCATGGTCTAACTCAAATCTCGATCCTCAATCCGACAGGACTCAGTTATCCATATCAATCCCAATGGCTACGTCGGATTTCAGATCCTCGACTTCGTCCCCGTCTAACGAGAAACTCACCCTTTCACCGTTGAAGTCGTCACAGGAGCTGGACCCAATTCAAATGGGGTTGGGAGTGGGGAATGTAATGGATGAACCAAACAACAGACAGGCAAATTGGATCCCCATCTCATGGGAGAGCTCGATGGGCGGTCCGCTCGGAGAGGTTCTTCATAGCACAAATAACAATGGCGGGGAATCGAAAAGCTCGTCGATACTCAACCTGATGACTGAAGGTTGGGACAACAGTCCATCACTAGGCTCGTCGCCTACCGGGGTACTGCAAAAGACGGCATTTGGTTCTTTCTCAAACAGCAGCACAGGGAGCAGCCCAAGAACAGAGAACAACAAGACGCATGAAGGCGGAGGAGGAGGCAGCAGCCAGTGCAGCGATCGTTTTGTGAATTCTTCTTCATCTTTGCCTAGTGTTTGA 1959 47.88 MDFGVVGLDGVVVGSSDTSGFSSLAASSDAETKQKWYESGCGFIHKQERSASVAAAEDEDDDEDLRTSKLLKTSDHLSSSSSSSSSSKGLLFPHRHSASLLRSNSPFFLSDSNQHHHQMLCFSSPKTESFPLDKTSSLSPVSPNFYHSSAPRNPGCNYGGLNGGSMHGGAFIGVRAPFTPSQWMELEHQALIYKYITANVPVPSNLLIPIRKALESAGFSTFSGGFLRPGTVGWGSFNMGFSNSSDPEPGRCRRTDGKKWRCSRDAVADQKYCERHMNRGRHRSRKPVEGQAGHSHSVAGASNITTAATATKLISSSASTAAVSCNGSPNNLSFASQHFKNLHRAGSHPPPSSAAAQINRMLITNKENGGIGLNDSTTSGLSVLSPSIDIKQSKQLAFAIQKQQNPFEESTRGAEFGLVSSSFLFGSSQKTSSLMNFRGFNPSEGITSTQEAAETQQSLRQFFNNWPKNQSDSSSVSWSNSNLDPQSDRTQLSISIPMATSDFRSSTSSPSNEKLTLSPLKSSQELDPIQMGLGVGNVMDEPNNRQANWIPISWESSMGGPLGEVLHSTNNNGGESKSSSILNLMTEGWDNSPSLGSSPTGVLQKTAFGSFSNSSTGSSPRTENNKTHEGGGGGSSQCSDRFVNSSSSLPSV 652
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29511862 29514892 + CcPI632755_08g018500.1 Cco08g1850 186324

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1850 652 ProSiteProfiles WRC domain profile. 246 290 IPR014977 -
Cco08g1850 652 MobiDBLite consensus disorder prediction 465 523 - -
Cco08g1850 652 ProSiteProfiles QLQ domain profile. 177 212 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1850 652 MobiDBLite consensus disorder prediction 72 90 - -
Cco08g1850 652 SMART QLQ_2 176 212 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1850 652 Pfam QLQ 177 211 IPR014978 GO:0005524(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Cco08g1850 652 Pfam WRC 247 289 IPR014977 -
Cco08g1850 652 PANTHER GROWTH-REGULATING FACTOR 5 169 505 IPR031137 GO:0005634(InterPro)|GO:0006351(InterPro)|GO:0032502(InterPro)
Cco08g1850 652 MobiDBLite consensus disorder prediction 70 90 - -
Cco08g1850 652 MobiDBLite consensus disorder prediction 592 652 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1850 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1571 Cco-Chr3:30341709 Cco08g1850 Cco-Chr8:29511862 3.30E-33 dispersed
Cco08g1850 Cco-Chr8:29511862 Cco11g0170 Cco-Chr11:1722325 4.50E-29 dispersed
Cco05g0250 Cco-Chr5:1974703 Cco08g1850 Cco-Chr8:29511862 1.20E-26 transposed
Cco04g1539 Cco-Chr4:30739508 Cco08g1850 Cco-Chr8:29511862 8.50E-109 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g612 Blo01g01488 Blo12g00996 Bda01g00599 Bda03g00162 Bpe02g00463 Bpe04g00144 . . Cmo05g00128 Cmo12g00548 . . . Car12g00553 . . Cpe07g00530 Bhi04g00454 Tan02g1695 . . Hepe08g1351 . . Cla08g01639 Cam08g2143 Cec08g1730 Cco08g1850 Clacu08g1831 . Cre08g1614 Cone4ag1631 Cone7ag1319 Cone17ag0901 Cone20ag0243 . . . Cme03g02123 . Blo18g00727 . Bda01g01584 Bpe02g01773 . Bma01g00682 . . . . Cma12g00612 Cma05g00124 Car05g00106 . Cpe11g00107 . . . . . . . . . . . . . . . Lsi08g01545 Csa02g01873 Chy03g01613 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001015 3 4 5 4 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 2 3 1 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59857 PF08879 WRC 3.70E-21 No_clan Cco TF