Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1852 ATGAAAATGGAGGTTACTTCTTCTGATCATCCTTACAATCAACACCATTCTCACTCTGCTTCAAATCCTTTCTACTTATCTCCTCATTTCAACCACAACAATACTGAAATCTTTTATGGAGTTCCTGATAATTCCTCTCTTCACCATCACTCTGCTGCTGCTTCCCTCTCTGTAATGCCTCTGAAATCTGATGGCTCACTCTGTATTATGGAAGCCCTTTCAAGATCTCAAACCGAAGGGATGGTACCGAGTTCTTCACCGAAGCTTGAGGATTTTCTTGGTGGTGCAACAATGGGGAATCGAGGAGGCTATTTCAATCAAAATGCTGAATCTGAAACCCACAAGGAACATTCTTTGGACCTTCTTCACAGACCCATTAGACAAAATCAACAGATTTTAATTCAAAATTCAAATCAATACTATTCTGGGTTAGTTCCATCTTCCATTGGAATTGGAACTTGCGATCCCCAAATTCTTCCACCTAACGACGACGAAATCCCTTGTCTTAGAAACTGGGTTTCTCGTTCTCACTACTCCGCTACACATAATACTCTGGAGCAGCATATTACCGGCGGCGCTCTTGTGAATGACGGAAGCGGTGGCGGCTCTGCTTCCATTGGCGGAATGAGCTGCGGGGAATTGCAGTCGTTGAGTTTGTCGATGAGTCCAGGTTCTCAATCGAGCTCTTTCACGGCTTCCGGCCAGATCTCCCCTACTGGAGGCGACGGCGGGGCCGTGGAAACTAAAAAAAGAGGCGCCGGAAAACTCTGCCAGAAACAACCCGTTCACCGCAAGTCCATTGATACTTTTGGCCAACGAACCTCCCAATATCGTGGCGTCACCAGACATAGATGGACCGGGAGATATGAAGCTCATCTGTGGGATAATAGTTGCAAGAAAGAAGGGCAAACCAGAAAAGGAAGACAAGTGTATCTTGGGGGATATGATATGGAAGAAAAAGCTGCAAGAGCTTATGATCTTGCTGCCCTCAAGTACTGGGGACCCTCTACCCATATAAATTTTCCATTGGAAAATTATCGGACTGAATTAGAAGAAATGAAGAATATGAGCCGCCAGGAATATGTTGCCCACTTGAGAAGAAAAAGCAGTGGCTTTTCAAGGGGCGCTTCTGTTTTCCGTGGAGTCACAAGACATCACCAACATGGAAGATGGCAAGCAAGGATTGGTAGAGTTGCTGGAAACAAAGACCTTTATCTTGGGACATTTAGCACGCAAGAGGAAGCGGCTGAGGCTTATGACATAGCAGCAATCAAATTCCGCGGTGTAAATGCTGTCACCAACTTTGACATTTCCAGATATGATGTCGAGAAAATCATGGCTAGTAATACTCTACTGGCAGGCGAGCTGGCTAGAAGGAACAAGGACGTCGAACTGAGCAGTGATACGACCGTCGTTCCCTACGACTCCTCGGTTGCGGCAAACAACAATGTCGGGATCGGGATTGGGATTGAAATCAATCCCGACGACAACGGTGCGAATGAGAATGCTAATGATTGGAAGATGGCATTGTATCAAAATCCATCACATCAACAACAGGTTTGTGTTGCGGAATCATTGGATCATCATCACAATAAATCCATGATCATATCGGGAGGTTATCGAAACACTTCGTTTTCGATGGCATTGCAGGATTTGATTGGGATCGAATCGTTGAATGCTAGTACTCATGGAATTGAGGATGATGTGAGCAAACAAGTGACTCATTTTTCAAATTCGTCGTCGTTGGTGACGAGTTTGAGTAGCTCGAGAGAAGGTAGTCCTGATAAGACGAATCTGTCAATGCCGTTTGGAAAGCCCCCACCCTTGATGGCATCAAAGCTAATTGGTGCAACGAGCGGGGTTGGGGTCGGAGTCGGTGCTTGGTACCCATCACCACAGCAGTTGAGGCCAACAGCGGCCATTTCAATGGCACATTTGCCTGTTTTTGCAACTTGGAATGACACTTAG 1968 45.78 MKMEVTSSDHPYNQHHSHSASNPFYLSPHFNHNNTEIFYGVPDNSSLHHHSAAASLSVMPLKSDGSLCIMEALSRSQTEGMVPSSSPKLEDFLGGATMGNRGGYFNQNAESETHKEHSLDLLHRPIRQNQQILIQNSNQYYSGLVPSSIGIGTCDPQILPPNDDEIPCLRNWVSRSHYSATHNTLEQHITGGALVNDGSGGGSASIGGMSCGELQSLSLSMSPGSQSSSFTASGQISPTGGDGGAVETKKRGAGKLCQKQPVHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQTRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHINFPLENYRTELEEMKNMSRQEYVAHLRRKSSGFSRGASVFRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFDISRYDVEKIMASNTLLAGELARRNKDVELSSDTTVVPYDSSVAANNNVGIGIGIEINPDDNGANENANDWKMALYQNPSHQQQVCVAESLDHHHNKSMIISGGYRNTSFSMALQDLIGIESLNASTHGIEDDVSKQVTHFSNSSSLVTSLSSSREGSPDKTNLSMPFGKPPPLMASKLIGATSGVGVGVGAWYPSPQQLRPTAAISMAHLPVFATWNDT 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29537290 29540226 + CcPI632755_08g018520.1 Cco08g1852 186326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1852 655 ProSiteProfiles AP2/ERF domain profile. 378 436 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 SUPERFAMILY DNA-binding domain 275 344 IPR016177 GO:0003677(InterPro)
Cco08g1852 655 Pfam AP2 domain 377 428 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 Pfam AP2 domain 276 334 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 SMART rav1_2 378 442 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 SMART rav1_2 276 348 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 CDD AP2 377 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 MobiDBLite consensus disorder prediction 217 238 - -
Cco08g1852 655 FunFam AP2-like ethylene-responsive transcription factor ANT 275 344 - -
Cco08g1852 655 MobiDBLite consensus disorder prediction 217 258 - -
Cco08g1852 655 CDD AP2 275 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 Gene3D AP2/ERF domain 378 438 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 Gene3D AP2/ERF domain 275 344 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 MobiDBLite consensus disorder prediction 1 20 - -
Cco08g1852 655 SUPERFAMILY DNA-binding domain 377 438 IPR016177 GO:0003677(InterPro)
Cco08g1852 655 PRINTS Ethylene responsive element binding protein signature 418 438 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 PRINTS Ethylene responsive element binding protein signature 277 288 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 162 500 - -
Cco08g1852 655 ProSiteProfiles AP2/ERF domain profile. 276 342 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco08g1852 655 FunFam AP2-like ethylene-responsive transcription factor 377 438 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1852 Cco-Chr8:29537290 Cco09g0332 Cco-Chr9:2933280 3.60E-63 dispersed
Cco05g2921 Cco-Chr5:36731248 Cco08g1852 Cco-Chr8:29537290 1.00E-137 transposed
Cco07g1482 Cco-Chr7:28971771 Cco08g1852 Cco-Chr8:29537290 8.60E-111 transposed
Cco10g0737 Cco-Chr10:10917055 Cco08g1852 Cco-Chr8:29537290 8.00E-87 transposed
Cco11g0916 Cco-Chr11:13224340 Cco08g1852 Cco-Chr8:29537290 2.50E-96 transposed
Cco04g1540 Cco-Chr4:30761904 Cco08g1852 Cco-Chr8:29537290 1.40E-154 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59858 PF00847 AP2 1.50E-13 CL0081 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1852 K09285 - csv:101212797 1159.05