Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco08g1853 | ATGGGTGGCTCTACTTCTGGCTTTCAATGTGAAATAATGAACTGTTCTTTTGGAGTAAGCAGTCCTCAGCGATTGATTGGAGCTGACACTTCTTTTTCATCTACCTGTGGATCTTCTGCAACAACTCCTCCCTGTGAATTATCCAACTCTTTGGAGAATGAGAGAGTGAAAACCATATCCCACATTCTTCACGATCCTTCAACTTTGAGCTTTGATATGTTTGGAAGTGGGAACTTCTCAGAAATGGTGGGTTCTTTTGGCTTTCTAAATGAAGGTAACCACAGCCAGATCCCTAATATTAAGTGTCCATTTAGTTATGTGCCAAATCTGGATGAAGAAGAAACGGTCTCGCCAAAGAAAGATGTGAAGGCTTGGCTCGATTGCGTTAATGAAAATCAAAGAAAATTGGTTCTTGGTTCCAATTCTTCCAGCCCAAATAAGAATGCTGAAGATAACTTGGATGTAGAAGCAACTGAGATCCTTAATAAAGATGAGAAAACATTGAAAGTTGAGCATAGAATGAGTGCAAATTTTTACACCAAATCAGATAGTAAACAAGCCAAAGGAGGCTCTCAAAGTGTACAAGCTCCCCAGGAGAATTATATTCACGTTCAAGCGCGACGGGGCCGAGCTACTAATAACCATAGTCTCGCAGAAAGGGTTAGAAGGGAAAAGATCAGTGAACGAATGAAGTTGCTGCAAGATCTTGTTCCTGGATGCAATCAGATTACCGGGAGAACCGTGGTGCTCGACGAAATTATTAACTATGTACAATCACTGCAACAACAGGTTGAGTTTCTATCGATGAAACTTGCAAATGTCGGTCCAGAATCAAGCTTGGATACAGAGCAAATTCTGCTCACAAATAACTCATACATTTCGTCATCAAATATTCTTCGTACACGAGGCAAAGGCGTCGACAGCGTCCTTGCTATTGATCCTAGATTAACAACATCTCACACAATTCCTCATGTCATGTTTCAATTTCATGGAACAGTACCAACCATGCCAAAAACTACATCTCAGCAACTTTCTAGCCTTTCCAAAATGAAATGA | 1056 | 40.62 | MGGSTSGFQCEIMNCSFGVSSPQRLIGADTSFSSTCGSSATTPPCELSNSLENERVKTISHILHDPSTLSFDMFGSGNFSEMVGSFGFLNEGNHSQIPNIKCPFSYVPNLDEEETVSPKKDVKAWLDCVNENQRKLVLGSNSSSPNKNAEDNLDVEATEILNKDEKTLKVEHRMSANFYTKSDSKQAKGGSQSVQAPQENYIHVQARRGRATNNHSLAERVRREKISERMKLLQDLVPGCNQITGRTVVLDEIINYVQSLQQQVEFLSMKLANVGPESSLDTEQILLTNNSYISSSNILRTRGKGVDSVLAIDPRLTTSHTIPHVMFQFHGTVPTMPKTTSQQLSSLSKMK | 351 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 8 | 29551013 | 29552634 | + | CcPI632755_08g018530.1 | Cco08g1853 | 186327 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco08g1853 | 351 | Pfam | Helix-loop-helix DNA-binding domain | 213 | 261 | IPR011598 | GO:0046983(InterPro) | |
| Cco08g1853 | 351 | SMART | finulus | 216 | 266 | IPR011598 | GO:0046983(InterPro) | |
| Cco08g1853 | 351 | FunFam | Basic helix-loop-helix transcription factor | 207 | 279 | - | - | |
| Cco08g1853 | 351 | CDD | bHLH_AtBPE_like | 200 | 285 | - | - | |
| Cco08g1853 | 351 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 210 | 260 | IPR011598 | GO:0046983(InterPro) | |
| Cco08g1853 | 351 | PANTHER | STEROL REGULATORY ELEMENT-BINDING PROTEIN | 140 | 311 | IPR024097 | GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro) | |
| Cco08g1853 | 351 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 208 | 273 | IPR036638 | GO:0046983(InterPro) | |
| Cco08g1853 | 351 | Gene3D | - | 207 | 280 | IPR036638 | GO:0046983(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco05g2919 | Cco-Chr5:36719300 | Cco08g1853 | Cco-Chr8:29551013 | 2.20E-47 | dispersed | |
| Cco08g1853 | Cco-Chr8:29551013 | Cco09g0834 | Cco-Chr9:7790126 | 8.00E-33 | dispersed | |
| Cco08g1853 | Cco-Chr8:29551013 | Cco02g0529 | Cco-Chr2:4951182 | 1.10E-29 | transposed |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 59859 | PF00010 | HLH | 7.70E-05 | No_clan | Cco | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco08g1853 | - | - | - | 0.0 |