Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1854 ATGGCTCCTTGGTGGGGAAGAGAAAGCCATAAAGGAACCCCTGTTGTTGTAAAGATGGAAAATCCCAACTGGTCAATAGTCGAAGTTGAAAGTCCTTCCGATGATGACTTCATCATCGGCGCCGAGTCGCCACCGGGTCGAGCCCGAGACAAGGGACGAGGCAAAAATGCCAAACAGCTCACTTGGGTTCTTCTTCTTAAAGCCCACAAAGCCGCCGGTTGTTTAACCTCCATTGGCTCTGCATTGATCAACATCGTCGCCGCCGTTAAACGCCGTCTTGCTTCTGGAAGAACCGACGCCGACGCCGACGCTGACAACGCCGACGGCGGCGTAAGGGAGAACCCAACTGTCAAAACCAGGTTTTATTTGTTTATTAAGGTTTTCCTTTGGCTGTCGGTGCTTCTGTTAGGGTTTGAGGTGGCGGCATATTACAAAGGTTGGCATTTTAAGGCACCCCATCTTCAATTGGACTACTTATGGACAACCCCATTTGGGGTTAAGGGTGTTTTTGACTGGTTTTATTCGAAATGGGTTTTGATTCGGGTTGCATATTTTGCTCCTCCTCTACAGTTTTTAGCCAATGTTTGTATAGTGTTGTTCCTTATTCAGACTTTGGATAGGCTTATTCTTTGTTTGGGTTGTTTCTGGATCCGATTCAAGAAAATCAAACCTGTTCCTAAGGTTGCTGCTTTTGATCTTGAGTCTGGAGAGAGTGGCTACTTCCCTATGGTTCTTGTTCAAATTCCAATGTGCAATGAGAAAGAGGTTTATCAGCAATCAATTGCTGCTGTCTGCAACTTGGACTGGCCAAAAGACAAGTTACTGATTCAGGTTCTTGATGACTCGGATGATCCAATCACCCAATTGCTGATCAAAGAGGAGGTATATAAATGGCAGCAACTTGATGCCAACATTGAATACCGACATCGAGTGATCCGAGAAGGCTATAAGGCAGGCAATCTCAAGTCTGCCATGAGTTGCAGCTATGTAAAAGACTATGAATTTGTTGCAATCTTTGATGCTGATTTTCAGCCTGCCTCGGATTTCCTCAAAAGAACAGTTCCTCATTTTAAGGATAATGAGGAACTAGGACTTGTTCAAGCGCGATGGTCGTTTGTCAACAAAGACGAGAACTTATTAACCAGACTGCAGAACATTAACTTAGCCTTCCATTTTGAAGTAGAGCAACAAGTGAATGGCGTGTTTCTCAATTTCTTTGGATTCAATGGTACTGCTGGAGTTTGGAGGATAAAGGCTCTTGAAGAAGCCGGTGGCTGGTTGGAGAGGACCACTGTTGAGGATATGGACATTGCCGTTCGTGCTCATCTTCATGGCTGGAAATTCATATTCCTCAATGATGTTGAGTGCCAATGTGAATTACCAGAATCGTATGAAGCATATAGAAAACAACAGCACAGATGGCATTCGGGACCGATGCAACTGTTTCGACTTTGTTTGCCTGACATAGTTCGATCAAAGATTGGCATATCAAAGAAATTCAATTTGATCTTCTTGTTCTTTCTCTTACGAAAGCTGATATTGCCATTTTATTCATTTACTCTCTTCTGCATAATTCTCCCAATGACGATGTTCGTTCCTGAAGCCGAGTTACCGGCGTGGGTTGTATGTTACATTCCAGCTACCATGTCCTTTCTCAACATCCTTCCAGCACCAAAATTCTTCCCCTTCATTGTCCCTTACCTCCTCTTTGAGAACACAATGTCAGTAACTAAGTTTAACGCAATGGTCTCAGGACTATTCCAGCTAGGTAGTGCATATGAGTGGGTCGTTACGAAGAAATCAGGCCGCTCGTCCGAGGGTGATCTTGCCTCAATGGTTGAGAAGAAAAAGCTGAACACTGAAAAGAGTGTCTCAGTAAACGACCTTGAGGAGAGTGAGTTGATCCAAAGACAGGACAAGAAGTTGCCAAGGAAGAAGCATAACAGAATATACATGAAGGAACTAGCACTGGCTTTCCTTCTTCTAACAGCATCTGCTAGAAGCCTCCTCTCAGCTCAAGGGATTCATTTCTACTTCTTGCTGTTCCAGGGTATATCCTTCCTCCTTGTCGGTCTAGACTTGATTGGCGAGCAGGTTGTTTGA 2103 44.32 MAPWWGRESHKGTPVVVKMENPNWSIVEVESPSDDDFIIGAESPPGRARDKGRGKNAKQLTWVLLLKAHKAAGCLTSIGSALINIVAAVKRRLASGRTDADADADNADGGVRENPTVKTRFYLFIKVFLWLSVLLLGFEVAAYYKGWHFKAPHLQLDYLWTTPFGVKGVFDWFYSKWVLIRVAYFAPPLQFLANVCIVLFLIQTLDRLILCLGCFWIRFKKIKPVPKVAAFDLESGESGYFPMVLVQIPMCNEKEVYQQSIAAVCNLDWPKDKLLIQVLDDSDDPITQLLIKEEVYKWQQLDANIEYRHRVIREGYKAGNLKSAMSCSYVKDYEFVAIFDADFQPASDFLKRTVPHFKDNEELGLVQARWSFVNKDENLLTRLQNINLAFHFEVEQQVNGVFLNFFGFNGTAGVWRIKALEEAGGWLERTTVEDMDIAVRAHLHGWKFIFLNDVECQCELPESYEAYRKQQHRWHSGPMQLFRLCLPDIVRSKIGISKKFNLIFLFFLLRKLILPFYSFTLFCIILPMTMFVPEAELPAWVVCYIPATMSFLNILPAPKFFPFIVPYLLFENTMSVTKFNAMVSGLFQLGSAYEWVVTKKSGRSSEGDLASMVEKKKLNTEKSVSVNDLEESELIQRQDKKLPRKKHNRIYMKELALAFLLLTASARSLLSAQGIHFYFLLFQGISFLLVGLDLIGEQVV 700
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29555363 29557908 - CcPI632755_08g018540.1 Cco08g1854 186328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1854 700 Gene3D Spore Coat Polysaccharide Biosynthesis Protein SpsA; Chain A 235 459 IPR029044 -
Cco08g1854 700 PANTHER GLUCOMANNAN 4-BETA-MANNOSYLTRANSFERASE 9 171 699 - GO:0005794(PANTHER)|GO:0016757(PANTHER)
Cco08g1854 700 SUPERFAMILY Nucleotide-diphospho-sugar transferases 244 522 IPR029044 -
Cco08g1854 700 FunFam probable xyloglucan glycosyltransferase 5 235 460 - -
Cco08g1854 700 Pfam Glycosyl transferase family group 2 336 544 IPR001173 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2918 Cco-Chr5:36712027 Cco08g1854 Cco-Chr8:29555363 0.00E+00 dispersed
Cco08g1854 Cco-Chr8:29555363 Cco09g0832 Cco-Chr9:7755178 1.40E-246 dispersed
Cco08g1854 Cco-Chr8:29555363 Cco10g1931 Cco-Chr10:32900863 5.00E-111 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1854 - - - 0.0