Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1861 ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCATAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAGAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTATCATCCCGATGCTGCTGCTGCTGCTTTTTACTTTGATGGGCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA 972 45.88 MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQIIASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPDAAAAAFYFDGHFMGDSHYRLGP 323
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29647500 29653082 - CcPI632755_08g018610.1 Cco08g1861 186335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1861 323 CDD homeodomain 234 286 IPR001356 GO:0003677(InterPro)
Cco08g1861 323 ProSiteProfiles ELK domain profile. 202 222 IPR005539 GO:0003677(InterPro)
Cco08g1861 323 Pfam Homeobox KN domain 242 281 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
Cco08g1861 323 ProSitePatterns 'Homeobox' domain signature. 260 283 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco08g1861 323 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 57 292 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g1861 323 SMART HOX_1 224 289 IPR001356 GO:0003677(InterPro)
Cco08g1861 323 MobiDBLite consensus disorder prediction 166 195 - -
Cco08g1861 323 SMART KNOX2_2 105 156 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1861 323 SUPERFAMILY Homeodomain-like 223 295 IPR009057 -
Cco08g1861 323 Pfam KNOX2 domain 112 155 IPR005541 GO:0003677(InterPro)|GO:0005634(InterPro)
Cco08g1861 323 Pfam ELK domain 202 223 IPR005539 GO:0003677(InterPro)
Cco08g1861 323 Gene3D - 219 291 - -
Cco08g1861 323 MobiDBLite consensus disorder prediction 174 195 - -
Cco08g1861 323 ProSiteProfiles 'Homeobox' domain profile. 222 285 IPR001356 GO:0003677(InterPro)
Cco08g1861 323 SMART ELK_2 202 223 IPR005539 GO:0003677(InterPro)
Cco08g1861 323 SMART ELK_2 114 134 IPR005539 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2818 Cco-Chr5:35868572 Cco08g1861 Cco-Chr8:29647500 1.70E-64 dispersed
Cco08g1527 Cco-Chr8:26915636 Cco08g1861 Cco-Chr8:29647500 5.90E-23 dispersed
Cco08g1861 Cco-Chr8:29647500 Cco08g1957 Cco-Chr8:30384952 1.50E-33 dispersed
Cco05g2007 Cco-Chr5:29168120 Cco08g1861 Cco-Chr8:29647500 1.50E-97 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59861 PF03791 KNOX2 2.50E-23 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1861 - - - 0.0