Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1861 | ATGGAAGATCAGTACAAGGTTCATGGTGATAGGTGTAGGGGAAATTTCTTGTACAATTCAGTACCCGTTTTGGCAACCAATTCTTCATCTCCTGCGGGCAATTTCGTAATTCGTTCCTCTTCTTCAAATGGGAATCAGATCATGGCCGTAAATGCAAATCTCGCCTCCGGTGACTCCAATTATTTTCCTCCGTCCGATCAAGTTGTCAAAGTGGAGCCTCCCACCGTTCAAGTCGGAGCACCGCCGGAGGTGGCGGCAAAACTTACTTCAGTAAGGGAGGAATTCGAGCAGCGGCGGCGGTCTTCAATGGCGTCCACCGAGGGCTCATCAATTGACCCTGAACTTGATCAATTCATGGAAGCTTATTATGGGATGTTGGTGAAGTATAGAGAGGAGTTAACAAGGCCAATTCAAGAAGCTTCAGATTTCATGCACAGAATTGAATCTCAGCTTAATACTCTCTGCAATGGCTCCTTTCAAATCATAGCATCTGGAACACAAGGGAAGTGCGAAGGAATGGGATCGTCGTCGGAGGAGGAAGAGAAGGGCGGGGAAATGGAAAGAGAGATAGAAGATCAAATCGACCCACGAGCTGAAGAGCGAGAGCTTAAGAATCACTTACTCAGAAAATACAGTGGTTATCTTAGCAGTTTAAAGCAAGAACTTTCCAAGAAAAAGAAGAAAGGAAAGCTCCCTAAAGACGCAAGACAAGAGCTCCTCCGTTGGTGGGAATTGCACAACAAATGGCCATATCCATCGGAGGCAGAAAAGTTGGCACTGGCGGAATCAACTGGGCTTGACCAGAAACAGATAAATAATTGGTTCATAAACCAAAGGAAAAGGCACTGGAAACCTTCTGAGGATGTGCAGTTTATGGGTATGGAGGGGTTTTATCATCCCGATGCTGCTGCTGCTGCTTTTTACTTTGATGGGCATTTCATGGGTGATTCCCATTATCGTTTGGGTCCATGA | 972 | 45.88 | MEDQYKVHGDRCRGNFLYNSVPVLATNSSSPAGNFVIRSSSSNGNQIMAVNANLASGDSNYFPPSDQVVKVEPPTVQVGAPPEVAAKLTSVREEFEQRRRSSMASTEGSSIDPELDQFMEAYYGMLVKYREELTRPIQEASDFMHRIESQLNTLCNGSFQIIASGTQGKCEGMGSSSEEEEKGGEMEREIEDQIDPRAEERELKNHLLRKYSGYLSSLKQELSKKKKKGKLPKDARQELLRWWELHNKWPYPSEAEKLALAESTGLDQKQINNWFINQRKRHWKPSEDVQFMGMEGFYHPDAAAAAFYFDGHFMGDSHYRLGP | 323 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 29647500 | 29653082 | - | CcPI632755_08g018610.1 | Cco08g1861 | 186335 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1861 | 323 | CDD | homeodomain | 234 | 286 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | ProSiteProfiles | ELK domain profile. | 202 | 222 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | Pfam | Homeobox KN domain | 242 | 281 | IPR008422 | GO:0003677(InterPro)|GO:0006355(InterPro) | |
Cco08g1861 | 323 | ProSitePatterns | 'Homeobox' domain signature. | 260 | 283 | IPR017970 | GO:0000981(InterPro)|GO:0006355(InterPro) | |
Cco08g1861 | 323 | PANTHER | HOMEOBOX PROTEIN TRANSCRIPTION FACTORS | 57 | 292 | IPR050224 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Cco08g1861 | 323 | SMART | HOX_1 | 224 | 289 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | MobiDBLite | consensus disorder prediction | 166 | 195 | - | - | |
Cco08g1861 | 323 | SMART | KNOX2_2 | 105 | 156 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1861 | 323 | SUPERFAMILY | Homeodomain-like | 223 | 295 | IPR009057 | - | |
Cco08g1861 | 323 | Pfam | KNOX2 domain | 112 | 155 | IPR005541 | GO:0003677(InterPro)|GO:0005634(InterPro) | |
Cco08g1861 | 323 | Pfam | ELK domain | 202 | 223 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | Gene3D | - | 219 | 291 | - | - | |
Cco08g1861 | 323 | MobiDBLite | consensus disorder prediction | 174 | 195 | - | - | |
Cco08g1861 | 323 | ProSiteProfiles | 'Homeobox' domain profile. | 222 | 285 | IPR001356 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | SMART | ELK_2 | 202 | 223 | IPR005539 | GO:0003677(InterPro) | |
Cco08g1861 | 323 | SMART | ELK_2 | 114 | 134 | IPR005539 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g2818 | Cco-Chr5:35868572 | Cco08g1861 | Cco-Chr8:29647500 | 1.70E-64 | dispersed | |
Cco08g1527 | Cco-Chr8:26915636 | Cco08g1861 | Cco-Chr8:29647500 | 5.90E-23 | dispersed | |
Cco08g1861 | Cco-Chr8:29647500 | Cco08g1957 | Cco-Chr8:30384952 | 1.50E-33 | dispersed | |
Cco05g2007 | Cco-Chr5:29168120 | Cco08g1861 | Cco-Chr8:29647500 | 1.50E-97 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59861 | PF03791 | KNOX2 | 2.50E-23 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1861 | - | - | - | 0.0 |