Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1878 ATGGAGGACACCCACGAGTACCGCCAGAAGTCGCCCATGCGGGTTGCTTCGCGGCATGGAACAACAATTCACACCTTTTATTTATTCATTTCACATTCCCCCATTTTCTTAATCTCCTTCCGAATCCTTGTCTTCTCATCACTTCCATTTCTCTCCCATGGTGACCAATTAGCCGGCAACATTCCATTTCACCACTCTGCAATGTTGAAGCTATTATCCTCATCTCACCGCATTTCCATCTTCATCTTCATCTTCCTCTGCTCTCCGCCGCTGCTTCCTTCCGCCGCTCTTCCCCTCTCCGACTCCGGTCATCAGCCTATCGCTAACGCTACCCTCCAGTCTAATAATGTATCCGTTCCGAGGAATAAGGAGGGCAGTTTTGCTGACATCATTGATCGTGCTTTGGAGAATGAATTCAAGGAGAATGACCAGAATGAAGCAATTGATGCAGGAAGTTTCAACAACAGTGTAGCGGAGCAGCAGGCAGTTCTGGAGACTGTGGCAAGGGTAAAGTCAAAGAAAAATGATACGAAAGAGGAAAAGTTTCAGCTTCAAAACGTTTTCAATTTGGACAGTGATAATAGAGCTGAAGACACTCCTACATTGATTGATCGAAAGGATAATGTCTTTATAATATCTAACTTCAAGTCTAAATATCCAGTGCTACAATTAGACTTGAGATTGATCTCTGATTTGGTAATCGTAATTGTCTCTGCAACTTGTGGTGGCATTGCCTTCGCATGTGCTGGACAACCAGTTATAACTGGATACCTTCTAGCAGGATCTATTATTGGACCTGGAGGATTTAACTTCGTCAGTGAAATGGTTCAAGTTGAAACGGTAGCTCAATTTGGTGTAATTTTTCTTCTTTTTGCACTGGGGTTGGAGTTTTCAACAGCTAAGCTTCGAGTTGTTCGTGCAGTTGCTGTTCTTGGTGGCCTGCTCCAAATTTTCCTGTTTATGTGCCTCAGTGGGATCACAGCCTCGACATGCGGTGGGAGTGCTTCTGAAGGGGTTTTTGTTGGAGCATTTCTATCAATGTCCTCAACAGCAGTGGTGCTGAAGTTTTTGATGGAAAAGAACTCAACTAATGCTCTTCATGGACAAGTCACAATTGGCACCCTTATTCTGCAGGACTGTGCTGTTGGGTTACTGTTTGCTTTGCTTCCAGTACTAGGTGGGAATTCTGGTATTCTTCAAGGAGTAATATCCATGAGTAAAGTGTTGGTGACCTTGGTTACTTTTTTGGTTGCTTTGTCAATTTTATCCCGTACATGTATTCCCTGGCTTTTAAAGTTGATGATAAGTCTATCATCACAGACCAATGAACTCTATCAATTAGCCTCCGTGGCGTTCTGCTTGCTCGTAGCATGGTGTAGTGATAAGTTGGGGCTGAGTCTAGAATTGGGTTCCTTTGCTGCCGGAGTGATGATATCGACAACTGATCTTGCTCAACACACACTTGAACAAATAGAGCCTATAAGGAACCTTTTTGCAGCCCTTTTTCTTGCCAGCATTGGAATGCTGATCCACGTTCAGTTTTTGTGGAACCATGTTGATATATTACTAGCAGCTGTTATACTGGTGATAATTGTAAAAACAATTGTAATTAGCACAGTGGTGAAGGGATTTGGGTATAACAACAGGACAGCACTCCTGGTTGGAATGTCTCTGGCTCAGATAGGAGAATTTGCTTTTGTTCTTCTCAGCCGTGCTTCTAATCTTCATCTAGTTGAGGGGAAACTGTATCTATTGCTTATTGGGACCACAGCCCTCAGTCTGGTGACAACTCCTTTTCTTTTCAAGCTGATACCTGCTGTAGTACATTTAGGCGTGCTATTGCGGTGGTTCTCTCCAGATAGTCTCGTTGAGTACAGGGACCTCATGATTCATAACAGTGATTGTATTTCAGTTGAAAATGAAACATCATTTCCTGCTCAAGAAGTCAAATTCTGGCCAGCTTATCCCCATGTGCAAGCGAACCTTCCATTGCTACTTCAAGACTCTTCATCAGATGGTCATCGGCAAAAGGAAAAAGAAAAAAAGGTCCAAGGCTTAACTGCCATTTACCTTCTTGCTAATAGCAACAACTTTGTTCCTGATGGTTTGCACGAATGTTAA 2121 43.09 MEDTHEYRQKSPMRVASRHGTTIHTFYLFISHSPIFLISFRILVFSSLPFLSHGDQLAGNIPFHHSAMLKLLSSSHRISIFIFIFLCSPPLLPSAALPLSDSGHQPIANATLQSNNVSVPRNKEGSFADIIDRALENEFKENDQNEAIDAGSFNNSVAEQQAVLETVARVKSKKNDTKEEKFQLQNVFNLDSDNRAEDTPTLIDRKDNVFIISNFKSKYPVLQLDLRLISDLVIVIVSATCGGIAFACAGQPVITGYLLAGSIIGPGGFNFVSEMVQVETVAQFGVIFLLFALGLEFSTAKLRVVRAVAVLGGLLQIFLFMCLSGITASTCGGSASEGVFVGAFLSMSSTAVVLKFLMEKNSTNALHGQVTIGTLILQDCAVGLLFALLPVLGGNSGILQGVISMSKVLVTLVTFLVALSILSRTCIPWLLKLMISLSSQTNELYQLASVAFCLLVAWCSDKLGLSLELGSFAAGVMISTTDLAQHTLEQIEPIRNLFAALFLASIGMLIHVQFLWNHVDILLAAVILVIIVKTIVISTVVKGFGYNNRTALLVGMSLAQIGEFAFVLLSRASNLHLVEGKLYLLLIGTTALSLVTTPFLFKLIPAVVHLGVLLRWFSPDSLVEYRDLMIHNSDCISVENETSFPAQEVKFWPAYPHVQANLPLLLQDSSSDGHRQKEKEKKVQGLTAIYLLANSNNFVPDGLHEC 706
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29805265 29815579 - CcPI632755_08g018780.1 Cco08g1878 186352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1878 706 Gene3D - 226 609 IPR038770 -
Cco08g1878 706 Pfam Sodium/hydrogen exchanger family 236 602 IPR006153 GO:0006812(InterPro)|GO:0015297(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)|GO:1902600(InterPro)
Cco08g1878 706 PANTHER POTASSIUM/PROTON ANTIPORTER-RELATED 111 630 IPR045158 GO:0015386(InterPro)|GO:0071805(InterPro)|GO:1902600(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0909 Cco-Chr5:7823209 Cco08g1878 Cco-Chr8:29805265 4.90E-185 dispersed
Cco05g0208 Cco-Chr5:1633729 Cco08g1878 Cco-Chr8:29805265 1.80E-37 transposed
Cco09g1854 Cco-Chr9:31700656 Cco08g1878 Cco-Chr8:29805265 2.50E-29 transposed
Cco03g1622 Cco-Chr3:30899477 Cco08g1878 Cco-Chr8:29805265 8.40E-229 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1878 K26735 - csv:101217282 967.992