Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1881 ATGTTCTTCATTGAGGATTTGTGGCAGATGCTCTTCGTTCGAGGTTTCCAGGATACAACTCGACTTCTCTCTGAGTCTTTTATACGGACCATATCCGAATCCATGGCCAATTCATCTTGTGGGGTCTCGGAATTAGAACTCTGTAGGAACGATACGGCTGCGCTCCATTTCAAATTAGTCGCCATCGCCTCGATTCTAACATCGGGAGTCATCGGAATCGCCATTCCGTTGTTTGGTAGGCAGAGTCGGTTCCTCAAAACAGACGGCAACCTGTTTGTGGCGGCGAAGGCGTTTGCCGCCGGTGTGATTCTAGCCACCGCCTTCGTCCATATGCTTCCGGATGGATCGAAGGCCCTCTCCGATCCGTGCTTGCCGGAATTTCCTTGGTCTAAATTCCCCTTCTCTGGATTCTTCGCGATGATGGCGTCGCTGTTGACGCTCCTCGTCGATTTCGTCGGAACTCAGTACTACGAGCGGAAACAGGGGATGATTCGGTCGAAAGAGGAGGCGAATCGGGTCGGGTCGATTACGGATTCCGGGTTGGAATCCGGCATTGTTCCGGCCGGAGATTTGAACGTGAAAGTGTTTGGGGAAGAGGACGGCGGGGCGATGCACATTGTCGGGATGCATGCCCACGCCGCCCACCACCGGCACAGTCATCCACAGGGGAAGCAGGCATGTGATGGGCACGTGACGGGTCATGATCATGGGCATGGGCACGGGCATGCCCATGGACATGTTCATTCTCATGGGCTGGACGGCGACGATGACGAAAGCGGTGTACGACATGTCGTTGTTTCCCAGATTTTGGAGCTTGGAATAGTGTCACATTCAGTCATAATTGGGCTATCTCTTGGAGTGTCCCACAGCCCATGCACCATTAGACCCTTAATTGCAGCTCTCTCCTTCCATCAGTTCTTTGAAGGCTTTGCCCTTGGTGGCTGCATTTCTCAGGCTCAATTCAACACCCTCTCCACCTCCCTCATGGCTGTCTTCTTCGCCATCACCACGCCCCTCGGCATCTCCATAGGCGCCGCCGTTGCCTCCACCTACAACCCCAACAGCACTGGGGCATTGGTTGCTGAAGGCATTTTGGACTCTCTGTCGGCCGGAATTTTGGTGTACATGGCTCTGGTTGATTTGATTGCGGCTGACTTTCTTAGCAAAAGAATGAGCTGCAATTTTAGACTCCAAATTGTTTCGTATTGTACTCTCTTCCTCGGCGCGGGGTTGATGTCTTCGCTTGCACTTTGGGCTTGA 1260 53.1 MFFIEDLWQMLFVRGFQDTTRLLSESFIRTISESMANSSCGVSELELCRNDTAALHFKLVAIASILTSGVIGIAIPLFGRQSRFLKTDGNLFVAAKAFAAGVILATAFVHMLPDGSKALSDPCLPEFPWSKFPFSGFFAMMASLLTLLVDFVGTQYYERKQGMIRSKEEANRVGSITDSGLESGIVPAGDLNVKVFGEEDGGAMHIVGMHAHAAHHRHSHPQGKQACDGHVTGHDHGHGHGHAHGHVHSHGLDGDDDESGVRHVVVSQILELGIVSHSVIIGLSLGVSHSPCTIRPLIAALSFHQFFEGFALGGCISQAQFNTLSTSLMAVFFAITTPLGISIGAAVASTYNPNSTGALVAEGILDSLSAGILVYMALVDLIAADFLSKRMSCNFRLQIVSYCTLFLGAGLMSSLALWA 419
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29847239 29850011 - CcPI632755_08g018810.1 Cco08g1881 186355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1881 419 NCBIfam ZIP zinc/iron transport family 40 419 IPR004698 GO:0005385(InterPro)|GO:0016020(InterPro)|GO:0071577(InterPro)
Cco08g1881 419 MobiDBLite consensus disorder prediction 235 254 - -
Cco08g1881 419 PANTHER ZINC/IRON TRANSPORTER 52 418 - GO:0005385(PANTHER)|GO:0005886(PANTHER)|GO:0016020(PANTHER)|GO:0071577(PANTHER)
Cco08g1881 419 Pfam ZIP Zinc transporter 56 416 IPR003689 GO:0016020(InterPro)|GO:0030001(InterPro)|GO:0046873(InterPro)|GO:0055085(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1881 Cco-Chr8:29847239 Cco11g1732 Cco-Chr11:30172907 4.20E-73 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1881 K14709 - csv:101218224 745.732