Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1897 ATGGATATTACTGAAGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAAACTCTCTCCGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGATCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCATCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGACGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGAATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAGACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCTCTTCTTTCAGCCCGTCTGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCTGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACCATCAGAGAGTAGCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2349 43.47 MDITEVEENLFAASDAKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSSVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLTKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHEYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREALPPAPTPTLTPTPIPTPTEPSESSGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29988417 29991865 + CcPI632755_08g018970.1 Cco08g1897 186371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1897 782 Gene3D - 12 105 IPR036537 GO:0007166(InterPro)
Cco08g1897 782 SUPERFAMILY RING/U-box 279 355 - -
Cco08g1897 782 MobiDBLite consensus disorder prediction 723 737 - -
Cco08g1897 782 PANTHER U BOX DOMAIN-CONTAINING 22 715 - -
Cco08g1897 782 SUPERFAMILY ARM repeat 433 699 IPR016024 -
Cco08g1897 782 Coils Coil 87 107 - -
Cco08g1897 782 MobiDBLite consensus disorder prediction 224 247 - -
Cco08g1897 782 Gene3D - 408 719 IPR011989 -
Cco08g1897 782 MobiDBLite consensus disorder prediction 718 749 - -
Cco08g1897 782 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cco08g1897 782 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1897 782 MobiDBLite consensus disorder prediction 222 253 - -
Cco08g1897 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cco08g1897 782 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cco08g1897 782 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1897 782 SMART arm_5 461 505 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 SMART arm_5 506 545 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 SMART arm_5 546 587 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1897 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0879 Cco-Chr3:10607264 Cco08g1897 Cco-Chr8:29988417 7.20E-11 dispersed
Cco05g1874 Cco-Chr5:27740283 Cco08g1897 Cco-Chr8:29988417 4.90E-17 dispersed
Cco07g0914 Cco-Chr7:21112444 Cco08g1897 Cco-Chr8:29988417 1.70E-88 dispersed
Cco08g1897 Cco-Chr8:29988417 Cco11g1436 Cco-Chr11:27123540 2.20E-280 dispersed
Cco08g1897 Cco-Chr8:29988417 Cco03g0164 Cco-Chr3:1593850 2.20E-35 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
Cco10g1534 . 1 1041 U-box Gene Family AT5G15400 76.1 0.0e+00 1579.3
Cco02g1344 . 296 940 U-box Gene Family AT2G23140 66.2 1.4e-123 440.7
Cco08g1897 . 1 780 U-box Gene Family AT1G24330 59.8 1.3e-245 846.3
Cco11g1436 . 1 755 U-box Gene Family AT1G24330 58.2 1.0e-229 793.5
Cco08g1897 . 1 779 U-box Gene Family AT1G67530 59.8 2.8e-243 838.6
Cco11g1436 . 1 756 U-box Gene Family AT1G67530 57.3 2.3e-226 782.3
Cco04g2025 . 1 362 U-box Gene Family AT4G21350 61.8 7.0e-120 427.6
Cco07g0211 . 135 455 U-box Gene Family AT3G07360 54.6 5.2e-79 291.6
Cco07g0680 . 265 452 U-box Gene Family AT1G71020 70.9 8.3e-73 271.6
Cco01g0639 . 1067 1266 U-box Gene Family AT1G71020 55.4 1.5e-53 207.6
Cco03g0164 . 276 445 U-box Gene Family AT1G71020 57.8 9.2e-48 188.3
Cco05g2381 . 249 414 U-box Gene Family AT1G71020 58.0 4.6e-47 186.0
Cco02g2163 . 255 425 U-box Gene Family AT1G71020 57.6 1.7e-46 184.1
Cco07g0680 . 16 656 U-box Gene Family AT1G23030 56.6 2.8e-110 396.4
Cco01g0639 . 853 1456 U-box Gene Family AT1G23030 51.9 3.3e-82 303.1
Cco03g0164 . 111 650 U-box Gene Family AT2G28830 59.7 2.3e-101 366.7
Cco02g2163 . 93 635 U-box Gene Family AT2G28830 50.6 8.2e-99 358.2
Cco03g0164 . 19 688 U-box Gene Family AT3G46510 67.8 1.9e-168 589.7
Cco02g2163 . 3 638 U-box Gene Family AT3G46510 66.4 2.0e-157 553.1
Cco05g2381 . 16 623 U-box Gene Family AT3G46510 58.8 3.9e-121 432.6
Cco05g2381 . 12 625 U-box Gene Family AT3G54850 68.5 6.7e-163 571.2
Cco02g2163 . 13 628 U-box Gene Family AT3G54850 57.1 5.7e-114 408.7
Cco02g1080 . 92 644 U-box Gene Family AT5G42340 64.0 9.5e-128 454.5
Cco04g0823 . 9 669 U-box Gene Family AT5G01830 57.4 1.5e-197 686.4
Cco03g0707 . 1 714 U-box Gene Family AT1G29340 67.9 7.2e-246 847.0
Cco05g1300 . 27 405 U-box Gene Family AT5G37490 51.8 7.2e-100 361.3
Cco04g0773 . 4 422 U-box Gene Family AT3G52450 51.9 6.9e-119 424.5
Cco10g1817 . 1 403 U-box Gene Family AT3G52450 50.5 2.3e-114 409.5
Cco10g1817 . 1 403 U-box Gene Family AT2G35930 55.1 1.0e-119 427.2
Cco04g0773 . 4 422 U-box Gene Family AT2G35930 50.8 1.2e-115 413.7
Cco05g1175 . 9 424 U-box Gene Family AT3G19380 64.4 2.0e-147 519.2
Cco05g1175 . 1 424 U-box Gene Family AT1G49780 64.6 6.0e-152 534.3
Cco04g1311 . 1 407 U-box Gene Family AT5G64660 53.7 2.1e-120 429.5
Cco04g1311 . 1 407 U-box Gene Family AT5G09800 50.6 5.4e-105 378.3
Cco08g1844 . 1 454 U-box Gene Family AT3G49810 63.2 1.8e-154 542.7
Cco05g2930 . 1 454 U-box Gene Family AT3G49810 62.8 5.8e-153 537.7
Cco08g1844 . 1 454 U-box Gene Family AT5G65920 64.3 3.0e-154 542.0
Cco05g2930 . 1 454 U-box Gene Family AT5G65920 61.5 8.0e-147 517.3
Cco05g0188 . 1 872 U-box Gene Family AT2G45910 52.9 3.0e-235 812.0
Cco01g0483 . 68 847 U-box Gene Family AT4G25160 50.4 1.9e-213 739.6
Cco09g2079 . 1 551 U-box Gene Family AT5G40140 53.9 3.3e-94 342.8
Cco01g1435 . 29 498 U-box Gene Family AT5G40140 51.9 4.0e-55 213.0
Cco08g1083 . 1 516 U-box Gene Family AT1G76390 64.3 3.3e-175 612.5
Cco08g1086 . 26 312 U-box Gene Family AT1G76390 55.6 2.1e-84 310.8
Cco08g1083 . 1 516 U-box Gene Family AT1G20780 63.8 3.2e-178 622.5
Cco08g1086 . 35 312 U-box Gene Family AT1G20780 57.7 3.3e-90 330.1
Cco08g1897 . 1 782 U-box Gene Family AT1G27910 62.8 6.4e-269 923.7
Cco11g1436 . 1 767 U-box Gene Family AT1G27910 62.3 1.5e-262 902.5
Cco04g1512 . 1 592 U-box Gene Family AT5G67530 74.2 2.9e-261 897.9
Cco05g0251 . 657 814 U-box Gene Family AT5G67530 52.5 3.1e-45 180.3
Cco10g1866 . 12 162 U-box Gene Family AT5G67530 50.3 9.4e-42 168.7
Cco04g1594 . 48 845 U-box Gene Family AT5G65500 50.1 5.9e-209 724.5
Cco05g0459 . 1 517 U-box Gene Family AT1G04510 74.4 4.0e-222 767.7
Cco05g0459 . 1 486 U-box Gene Family AT2G33340 73.6 3.6e-209 724.5
Cco07g0210 . 10 278 U-box Gene Family AT3G07370 66.9 2.9e-102 368.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003521 0 9 3 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 48