Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1897 ATGGATATTACTGAAGTTGAAGAAAATCTATTTGCTGCAAGTGATGCCAAGCTACATGGAGGAATGTGCAAAACTCTCTCCGCAATATATTATAAAGTACTATCAATTTTCCCTTCATTGGAAGCTGCACGACCTCGGAGCAAATCTGGTATCCAGTCATTATGTTCATTGCATGTAGCACTAGAAAAAGCCAAGAACACTCTCCAACATTGTACAGAGAGTAGCAAACTTTACTTGGCTATAACTGGGGACTCTGTCCTGTCAAAGTTTGAGAAGGTAAAAAATGCTCTACAAGACAGCCTTAAACGTGTTGAAGATATTGTTCCACAGTCAATTGGATATCAGGTTCAGGAGATTATGAAGGAACTGGCCAGTACTCAATTTTTCCTGGATCCTTTAGAGAAGCAAGTTGGTGACGACATTATTTTATTGCTCCAACAGGGACGAACATTTAACAACACTGTTGACAGCAATGAGCTTGAGGCTTTTCACCAAGCTGCTATTAGACTTGGAATAAACTCCTCGAGAGCAGCTCTTGCAGAAAGAAGAGCACTAAAGAAACTAATTGACCGATCTCGCACTGAAGACGACAAGAGGAAGGAATCAATTGTAGCATATCTTTTGCATCTCATGAGGAAGTACTCCAAGTTATTTAGAAGCGAGGTATCAGATGACAATGATTCACAGGGTTCTGGACCTTGTTCACCCACTGTTCAGAGCTCTCTCGAGGACAGTGGACCTGGTGGAAATGGTCAAGCCTTTGAAAGGCAGCTAACAAAGATTGGTTCTTTTACTTTGAAGCCAAAAAATCGCAGATTGGAGCAGATTCCCCTTCCACCTGATGAGTTGAGGTGTCCTATATCATTGCAGCTTATGTATGATCCGGTCATAATTGCTTCCGGGCAAACATATGAAAGGATTTGCATTGAGAAGTGGTTAAGTGACGGCCATAACACCTGCCCAAAAACTCAACAGAAACTCTCTCATCTTTCATTGACACCCAATTACTGTGTTAAGGGCCTGATTGCAAACTGGTGTGAACAGTATGGAGTTCCTGTTCCTGATGGGCCTCCAGATAGTCTTGACCTCAATTACTGGAGGCTCGAGTTATCTGAATCAGAGTCTCTTAATTTGTCATCTGTGGACTCTGTTGGTTCTTGTAAGTTGAAAGATGTTAAAGTTGTCCCACTGGATGAAAATTGTGTAACTGAGGAGATCAAAGGAAATGTAGTGGATGACATTGACAACTCTGCTGAAGACCAAGAGTCCAATGTAAATATGCTTGCTAGGTATGAACAGTATTTGAAAGTCCTAAATGAAGAAGCGGACTTGACGAAAAAGTCCGCGGTTGTGGAGCAAATTAGACTGTTGCTCAAGGATGATGAAGAGGCGAGGATATATATGGGAGCTAATGGATTTGTCCAGGGACTTCTACGGTACTTAGAGATAGCTGTGCAAGAACAAAATACCAAGGCCCAGGAAAGTGGAGCAATGGCTCTTTTCAACCTTGCTGTCAACAACGACAGGAACAAGGAAATAATGTTGGCAGAACGGGTGATTTCATTGTTGGAGGAAATGATTATGAACCCAAATTCCCATGAATATGCAACGGCCCTCTATCTTAATGTCTCCTGTCTGGAAGAAGCAAAATCTATTATCGGCTCAAGTTGTGCGGTCCCGTTCTTGACTCAACTCCTCCACGCTAATACCGAGACACTATGCAAGCTTGATGCACTTCACACACTTTACAATCTCTCAACTGTGCCCTCCAATATTCCCAACCTGGTTTCTTCTGGAATCATCAAGGGACTTCAAGCTCTTCTTTCAGCCCGTCTGGATCGAACATGGACCGAAAAGTGCATAGCCATCTTGATAAATTTGGCTTCAAGTGAATCAGGTAGAGATCAAATGTCATCTACTCCAGAACTTATCAGTGGGTTGGCAGCAATATTAGACAATGGTGAGCCCATTGAGCAGGAACAAGCAGTGGCTTGTCTCTTGATTCTATGCAATGGGAATGAGAGGTGCAGCGAGATGGTCCTACAGGAAGGCGTAATTCCCGGTTTGGTGTCGATGTCTGTGAACGGGACAGCAAGAGGTAAGGAAAAGGCTCAAAAGCTTCTGATGTTGTTTAGGGAGCAACGACAACGGGAGGCGCTGCCACCAGCACCCACACCCACACTAACACCGACACCCATACCGACACCGACCGAACCATCAGAGAGTAGCGGGACATCTATGGCTGTGGCGGAATCAAAGCCACTGTGCAAGTCAATCTCAAGAAGAAAAACATCAAAAGCTTTTAGCTTTTTATGGAAAAGCAAAAGCTATTCAGTGTACCAATGCTAA 2349 43.47 MDITEVEENLFAASDAKLHGGMCKTLSAIYYKVLSIFPSLEAARPRSKSGIQSLCSLHVALEKAKNTLQHCTESSKLYLAITGDSVLSKFEKVKNALQDSLKRVEDIVPQSIGYQVQEIMKELASTQFFLDPLEKQVGDDIILLLQQGRTFNNTVDSNELEAFHQAAIRLGINSSRAALAERRALKKLIDRSRTEDDKRKESIVAYLLHLMRKYSKLFRSEVSDDNDSQGSGPCSPTVQSSLEDSGPGGNGQAFERQLTKIGSFTLKPKNRRLEQIPLPPDELRCPISLQLMYDPVIIASGQTYERICIEKWLSDGHNTCPKTQQKLSHLSLTPNYCVKGLIANWCEQYGVPVPDGPPDSLDLNYWRLELSESESLNLSSVDSVGSCKLKDVKVVPLDENCVTEEIKGNVVDDIDNSAEDQESNVNMLARYEQYLKVLNEEADLTKKSAVVEQIRLLLKDDEEARIYMGANGFVQGLLRYLEIAVQEQNTKAQESGAMALFNLAVNNDRNKEIMLAERVISLLEEMIMNPNSHEYATALYLNVSCLEEAKSIIGSSCAVPFLTQLLHANTETLCKLDALHTLYNLSTVPSNIPNLVSSGIIKGLQALLSARLDRTWTEKCIAILINLASSESGRDQMSSTPELISGLAAILDNGEPIEQEQAVACLLILCNGNERCSEMVLQEGVIPGLVSMSVNGTARGKEKAQKLLMLFREQRQREALPPAPTPTLTPTPIPTPTEPSESSGTSMAVAESKPLCKSISRRKTSKAFSFLWKSKSYSVYQC 782
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 29988417 29991865 + CcPI632755_08g018970.1 Cco08g1897 186371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1897 782 Gene3D - 12 105 IPR036537 GO:0007166(InterPro)
Cco08g1897 782 SUPERFAMILY RING/U-box 279 355 - -
Cco08g1897 782 MobiDBLite consensus disorder prediction 723 737 - -
Cco08g1897 782 PANTHER U BOX DOMAIN-CONTAINING 22 715 - -
Cco08g1897 782 SUPERFAMILY ARM repeat 433 699 IPR016024 -
Cco08g1897 782 Coils Coil 87 107 - -
Cco08g1897 782 MobiDBLite consensus disorder prediction 224 247 - -
Cco08g1897 782 Gene3D - 408 719 IPR011989 -
Cco08g1897 782 MobiDBLite consensus disorder prediction 718 749 - -
Cco08g1897 782 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Cco08g1897 782 SMART Ubox_2 282 345 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1897 782 MobiDBLite consensus disorder prediction 222 253 - -
Cco08g1897 782 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 278 351 IPR013083 -
Cco08g1897 782 CDD RING-Ubox_PUB 280 332 IPR045210 -
Cco08g1897 782 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Cco08g1897 782 SMART arm_5 461 505 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 SMART arm_5 506 545 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 SMART arm_5 546 587 IPR000225 GO:0005515(InterPro)
Cco08g1897 782 Pfam U-box domain 280 348 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0879 Cco-Chr3:10607264 Cco08g1897 Cco-Chr8:29988417 7.20E-11 dispersed
Cco05g1874 Cco-Chr5:27740283 Cco08g1897 Cco-Chr8:29988417 4.90E-17 dispersed
Cco07g0914 Cco-Chr7:21112444 Cco08g1897 Cco-Chr8:29988417 1.70E-88 dispersed
Cco08g1897 Cco-Chr8:29988417 Cco11g1436 Cco-Chr11:27123540 2.20E-280 dispersed
Cco08g1897 Cco-Chr8:29988417 Cco03g0164 Cco-Chr3:1593850 2.20E-35 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1897 - - - 0.0