Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1918 ATGGAAAATGGCTTCTCTTCTCCCCGAAGTGATGCGTTTCCTATCGGTCTTCGTGTTCTTGTTGTTGATGATGATCCAACATGGCTGAAAATCCTGGAAAAGATGCTCAAGAAGTGCTCTTACGAAGTGACTACATGTTGTTTGGCAAGGGAGGCTCTGAGCCTGCTTAGGGAGAGAAAAGATGGATATGATATCGTAATCAGCGACGTCAACATGCCCGATATGGATGGTTTTAAACTCCTTGAGCATGTGGGATTGGAAATGGACCTGCCAGTTATCATGATGTCAGTCGATGGAGAAACGAGCAGAGTAATGAAAGGGGTTCAACATGGCGCTTGTGATTATCTTCTAAAGCCGATACGAATGAAAGAACTTAGGAATATATGGCAGCATGTATTGCGAAAGAAGATACAAGAGGGAAGAGATATTGAAGGCCATGATGTTATTGAAGGCATCCACATCCTAAGAAATGTGGCAGATAGGTATGATGATAGCCAGTTCCTTAGAGGAGAGGAACTATTTTCAGTGAGGAAACGAAAAGATATTGATAAGCATGAGGACAAAGACTTTTGTGACACTTCTTCAACAAAGAAAGCAAGGGTTGTTTGGTCAGTTGATCTGCACCAGAAATTTGTAAAAGCAGTAAACCAGATAGGTTTTGACAAAGTTGGCCCTAAAAAGATACTTGATCTGATGAATGTCCCATGGCTAACTAGGGAAAATGTAGCAAGCCACTTGCAGAAATATCGCCTCTATTTGAGTCGACTGCAGAAAGAAAATGATCCAAAAGCTTGCTTTGTTGTTGGAATGAAACATACAGATTCGTGTTCGAAGGATGGAGATGGAAACTTTGGCCTCCGTAGCTCATTAGCCGTGCCACAAAATGATGTCACAAATAGCAGCTTCAGTTTTTCAGGTGATAACTTCCTGCTACAGAATGTTGATTCCATAGGCTGTGAAGTTGATAGGAAAAGGGTTGTTCAAGAGCATACATCAGAGCCAAAAAGAGCTGCTGCTAGGAGTGTTCCTGAACCGATAAAGTCCAGGTGTACTCAGATGAAATTCAACAACTCTATTCACTCTGTTGAACCTGAAGGGAAGTTTGCAGCATTTGACCCAAGCAACCGAAGCTGTTATCCTTGGGTTGAAGCTCCAGAAATCAAGTTCAAACAAGAAAGCAAGCCACTTGTGCATTTAGAAGGAGATTTCAATCAGTTCCCTCCAACGGTTCCACCACACCAAGTTCAAATGGACCCACTACAATCAATTTCATCCATTAGTTCTGGACGGTCAGCAACGGAGAAAGATATATCAAACTCCATTGAAAGTAAGCCTCCATATTCTGAGGACTGTAGCCAACAAATGGTCCATTTAAATCTACCGAAAACTCCAACTGATTCATTTTCTGGCAAGGCTAAGAGTTTCAATGAGATGAATGACCATTTTGATCCCAATTCAACTACTACTGCTCCAATGGGCAAAAACCAGAATTTCAATCTTAGCTGCATTTCAACTGATTTAGGAAGTGGGTTACCTTTTGCAACCATTGATGAAGATTTGCAGGGCTATTTACTTCAAGATGGCTGCTATCCAAAGGACCTTGAACATCAGATTATAGAGTTTCCAGATTATGGTGATCCAGGCATCTTCACTGAAGTTCCTACTCACCTTTACGATGCAATGAGGTTTGGCTATGATTATTCCTACGACCCAACTGAGTATCCGGTGATAGATGAAGGCCTATTTATTGCATGA 1755 41.6 MENGFSSPRSDAFPIGLRVLVVDDDPTWLKILEKMLKKCSYEVTTCCLAREALSLLRERKDGYDIVISDVNMPDMDGFKLLEHVGLEMDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRNIWQHVLRKKIQEGRDIEGHDVIEGIHILRNVADRYDDSQFLRGEELFSVRKRKDIDKHEDKDFCDTSSTKKARVVWSVDLHQKFVKAVNQIGFDKVGPKKILDLMNVPWLTRENVASHLQKYRLYLSRLQKENDPKACFVVGMKHTDSCSKDGDGNFGLRSSLAVPQNDVTNSSFSFSGDNFLLQNVDSIGCEVDRKRVVQEHTSEPKRAAARSVPEPIKSRCTQMKFNNSIHSVEPEGKFAAFDPSNRSCYPWVEAPEIKFKQESKPLVHLEGDFNQFPPTVPPHQVQMDPLQSISSISSGRSATEKDISNSIESKPPYSEDCSQQMVHLNLPKTPTDSFSGKAKSFNEMNDHFDPNSTTTAPMGKNQNFNLSCISTDLGSGLPFATIDEDLQGYLLQDGCYPKDLEHQIIEFPDYGDPGIFTEVPTHLYDAMRFGYDYSYDPTEYPVIDEGLFIA 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30151572 30154388 - CcPI632755_08g019180.1 Cco08g1918 186392

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1918 584 SMART REC_2 17 129 IPR001789 GO:0000160(InterPro)
Cco08g1918 584 Pfam Myb-like DNA-binding domain 200 250 IPR001005 -
Cco08g1918 584 SUPERFAMILY CheY-like 16 141 IPR011006 -
Cco08g1918 584 FunFam Two-component response regulator 17 172 - -
Cco08g1918 584 PIRSF RR_ARR_type-B 1 520 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cco08g1918 584 Gene3D - 194 257 - -
Cco08g1918 584 SUPERFAMILY Homeodomain-like 196 255 IPR009057 -
Cco08g1918 584 PANTHER TWO-COMPONENT RESPONSE REGULATOR 17 336 IPR045279 GO:0009736(InterPro)
Cco08g1918 584 ProSiteProfiles Response regulatory domain profile. 18 133 IPR001789 GO:0000160(InterPro)
Cco08g1918 584 Pfam Response regulator receiver domain 19 128 IPR001789 GO:0000160(InterPro)
Cco08g1918 584 FunFam Two-component response regulator 194 257 - -
Cco08g1918 584 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 251 IPR006447 GO:0003677(InterPro)
Cco08g1918 584 MobiDBLite consensus disorder prediction 424 449 - -
Cco08g1918 584 CDD REC_typeB_ARR-like 19 133 - -
Cco08g1918 584 Gene3D - 17 171 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1918 K14491 - - csv:101204370 1118.22
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1405 Cco-Chr6:24515754 Cco08g1918 Cco-Chr8:30151572 4.20E-71 dispersed
Cco08g1918 Cco-Chr8:30151572 Cco11g0371 Cco-Chr11:3717960 2.90E-64 dispersed
Cco08g1918 Cco-Chr8:30151572 Cco05g0752 Cco-Chr5:6184748 1.30E-80 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1918 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cco11g0371 . 59 306 Response Regulator Gene Family AT3G16857 53.2 8.0e-52 202.2
Cco11g0371 . 13 340 Response Regulator Gene Family AT4G31920 51.2 1.4e-79 294.3
Cco06g0479 . 45 300 Response Regulator Gene Family AT4G31920 54.3 5.2e-71 265.8
Cco05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Cco08g1918 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cco05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cco05g1878 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cco06g1405 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cco11g0371 . 15 359 Response Regulator Gene Family AT2G25180 54.6 9.0e-85 311.6
Cco05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cco08g1918 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cco06g0479 . 108 341 Response Regulator Gene Family AT2G01760 50.6 5.7e-54 208.4
Cco06g1405 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cco08g1918 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cco08g1918 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cco06g0479 . 46 271 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cco05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cco05g1878 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cco08g1918 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cco06g1405 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cco11g0371 . 18 266 Response Regulator Gene Family AT4G16110 51.3 8.5e-52 202.2
Cco06g1869 . 16 178 Response Regulator Gene Family AT3G48100 68.9 9.6e-54 206.8
Cco05g2760 . 41 174 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cco01g0785 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cco04g0576 . 10 156 Response Regulator Gene Family AT3G48100 57.1 3.6e-40 161.8
Cco05g2946 . 4 167 Response Regulator Gene Family AT3G48100 54.3 7.9e-40 160.6
Cco10g1598 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cco07g0539 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cco05g2760 . 30 213 Response Regulator Gene Family AT1G59940 63.6 6.8e-55 211.5
Cco06g1869 . 32 177 Response Regulator Gene Family AT1G59940 66.4 5.3e-47 185.3
Cco01g0785 . 5 152 Response Regulator Gene Family AT1G59940 58.8 2.8e-40 162.9
Cco10g1598 . 8 154 Response Regulator Gene Family AT1G59940 57.1 1.1e-39 161.0
Cco05g2946 . 11 153 Response Regulator Gene Family AT1G59940 60.1 1.4e-39 160.6
Cco04g0576 . 11 154 Response Regulator Gene Family AT1G59940 55.6 4.5e-38 155.6
Cco07g0539 . 16 151 Response Regulator Gene Family AT1G59940 60.3 4.5e-38 155.6
Cco05g2760 . 40 197 Response Regulator Gene Family AT1G10470 71.5 5.7e-54 208.0
Cco06g1869 . 32 161 Response Regulator Gene Family AT1G10470 72.3 2.6e-46 182.6
Cco10g1598 . 10 162 Response Regulator Gene Family AT1G10470 55.6 1.1e-39 160.6
Cco01g0785 . 5 157 Response Regulator Gene Family AT1G10470 57.5 1.4e-39 160.2
Cco05g2946 . 11 175 Response Regulator Gene Family AT1G10470 52.7 2.0e-38 156.4
Cco04g0576 . 17 154 Response Regulator Gene Family AT1G10470 59.4 4.4e-38 155.2
Cco07g0539 . 21 151 Response Regulator Gene Family AT1G10470 61.1 1.7e-37 153.3
Cco06g1869 . 16 178 Response Regulator Gene Family AT3G48100 68.9 9.6e-54 206.8
Cco05g2760 . 41 174 Response Regulator Gene Family AT3G48100 71.6 2.2e-50 195.7
Cco01g0785 . 11 151 Response Regulator Gene Family AT3G48100 60.3 1.2e-40 163.3
Cco04g0576 . 10 156 Response Regulator Gene Family AT3G48100 57.1 3.6e-40 161.8
Cco05g2946 . 4 167 Response Regulator Gene Family AT3G48100 54.3 7.9e-40 160.6
Cco10g1598 . 3 156 Response Regulator Gene Family AT3G48100 52.6 1.9e-38 156.0
Cco07g0539 . 21 152 Response Regulator Gene Family AT3G48100 56.8 8.2e-37 150.6
Cco06g1869 . 28 166 Response Regulator Gene Family AT5G62920 74.8 1.0e-50 196.8
Cco05g2760 . 23 187 Response Regulator Gene Family AT5G62920 62.4 5.5e-49 191.0
Cco01g0785 . 11 151 Response Regulator Gene Family AT5G62920 60.3 3.6e-40 161.8
Cco04g0576 . 12 156 Response Regulator Gene Family AT5G62920 57.2 1.8e-39 159.5
Cco10g1598 . 10 156 Response Regulator Gene Family AT5G62920 55.1 6.8e-39 157.5
Cco05g2946 . 11 170 Response Regulator Gene Family AT5G62920 52.8 7.5e-38 154.1
Cco06g1869 . 29 171 Response Regulator Gene Family AT1G19050 73.4 3.8e-51 198.4
Cco05g2760 . 35 197 Response Regulator Gene Family AT1G19050 58.5 5.4e-45 177.9
Cco05g2946 . 8 158 Response Regulator Gene Family AT1G19050 55.0 7.5e-39 157.5
Cco04g0576 . 11 156 Response Regulator Gene Family AT1G19050 54.8 4.9e-38 154.8
Cco10g1598 . 8 156 Response Regulator Gene Family AT1G19050 53.0 8.3e-38 154.1
Cco01g0785 . 7 154 Response Regulator Gene Family AT1G19050 54.1 1.1e-37 153.7
Cco07g0539 . 21 152 Response Regulator Gene Family AT1G19050 60.6 1.8e-37 152.9
Cco04g0576 . 8 264 Response Regulator Gene Family AT2G41310 54.5 8.4e-60 227.3
Cco10g1598 . 1 157 Response Regulator Gene Family AT2G41310 71.3 1.4e-54 209.9
Cco01g0785 . 1 153 Response Regulator Gene Family AT2G41310 64.9 3.9e-49 191.8
Cco08g0714 . 7 158 Response Regulator Gene Family AT2G41310 58.4 4.6e-42 168.3
Cco05g2760 . 37 170 Response Regulator Gene Family AT2G41310 59.2 1.0e-41 167.2
Cco06g1869 . 31 162 Response Regulator Gene Family AT2G41310 61.9 3.0e-41 165.6
Cco07g0539 . 15 152 Response Regulator Gene Family AT2G41310 55.6 5.7e-40 161.4
Cco04g0576 . 8 264 Response Regulator Gene Family AT3G57040 53.5 3.8e-63 238.4
Cco10g1598 . 1 157 Response Regulator Gene Family AT3G57040 74.5 1.2e-56 216.9
Cco01g0785 . 8 153 Response Regulator Gene Family AT3G57040 67.8 1.7e-50 196.4
Cco05g2946 . 4 157 Response Regulator Gene Family AT3G57040 65.4 2.4e-49 192.6
Cco05g2760 . 37 170 Response Regulator Gene Family AT3G57040 59.4 2.0e-43 172.9
Cco08g0714 . 11 174 Response Regulator Gene Family AT3G57040 55.8 7.4e-43 171.0
Cco06g1869 . 28 171 Response Regulator Gene Family AT3G57040 58.2 1.8e-41 166.4
Cco07g0539 . 18 152 Response Regulator Gene Family AT3G57040 56.7 3.8e-39 158.7
Cco06g1869 . 26 177 Response Regulator Gene Family AT1G74890 71.8 3.5e-52 201.8
Cco05g2760 . 37 199 Response Regulator Gene Family AT1G74890 61.2 4.4e-47 184.9
Cco05g2946 . 5 158 Response Regulator Gene Family AT1G74890 57.1 5.2e-40 161.4
Cco04g0576 . 12 172 Response Regulator Gene Family AT1G74890 52.1 1.5e-39 159.8
Cco01g0785 . 11 146 Response Regulator Gene Family AT1G74890 60.3 5.7e-39 157.9
Cco10g1598 . 8 154 Response Regulator Gene Family AT1G74890 54.4 2.2e-38 156.0
Cco07g0539 . 21 148 Response Regulator Gene Family AT1G74890 60.2 5.4e-37 151.4
Cco07g0539 . 21 153 Response Regulator Gene Family AT2G40670 70.1 2.1e-47 185.7
Cco05g2760 . 38 171 Response Regulator Gene Family AT2G40670 56.9 3.2e-40 161.8
Cco10g1598 . 6 156 Response Regulator Gene Family AT2G40670 54.6 7.1e-40 160.6
Cco06g1869 . 32 163 Response Regulator Gene Family AT2G40670 60.0 3.0e-38 155.2
Cco07g0539 . 21 153 Response Regulator Gene Family AT3G56380 70.9 8.6e-48 186.8
Cco05g2760 . 35 171 Response Regulator Gene Family AT3G56380 52.9 3.0e-40 161.8
Cco06g1869 . 18 163 Response Regulator Gene Family AT3G56380 57.8 5.1e-40 161.0
Cco10g1598 . 6 156 Response Regulator Gene Family AT3G56380 52.6 9.6e-39 156.8
Cco01g0785 . 11 154 Response Regulator Gene Family AT3G56380 54.5 1.8e-37 152.5
Cco05g2946 . 3 148 Response Regulator Gene Family AT3G56380 55.8 4.0e-37 151.4
Cco08g1918 . 52 256 Response Regulator Gene Family AT3G16857 53.8 2.2e-54 210.7
Cco11g0371 . 59 306 Response Regulator Gene Family AT3G16857 53.2 8.0e-52 202.2
Cco06g0479 . 46 271 Response Regulator Gene Family AT4G16110 66.7 2.1e-79 293.9
Cco05g0752 . 12 242 Response Regulator Gene Family AT4G16110 66.1 3.7e-79 293.1
Cco05g1878 . 12 233 Response Regulator Gene Family AT4G16110 60.2 2.0e-61 234.2
Cco08g1918 . 10 235 Response Regulator Gene Family AT4G16110 54.5 9.4e-59 225.3
Cco06g1405 . 17 249 Response Regulator Gene Family AT4G16110 53.8 8.8e-57 218.8
Cco11g0371 . 18 266 Response Regulator Gene Family AT4G16110 51.3 8.5e-52 202.2
Cco11g0371 . 13 340 Response Regulator Gene Family AT4G31920 51.2 1.4e-79 294.3
Cco06g0479 . 45 300 Response Regulator Gene Family AT4G31920 54.3 5.2e-71 265.8
Cco05g0752 . 16 271 Response Regulator Gene Family AT4G31920 54.1 9.8e-70 261.5
Cco08g1918 . 11 259 Response Regulator Gene Family AT4G31920 50.4 4.4e-62 236.1
Cco05g0752 . 99 286 Response Regulator Gene Family AT1G67710 50.3 1.7e-40 164.1
Cco05g1878 . 93 255 Response Regulator Gene Family AT1G67710 53.8 3.0e-40 163.3
Cco06g1405 . 16 390 Response Regulator Gene Family AT2G25180 55.6 6.2e-102 368.6
Cco11g0371 . 15 359 Response Regulator Gene Family AT2G25180 54.6 9.0e-85 311.6
Cco05g0752 . 18 291 Response Regulator Gene Family AT2G25180 55.9 1.4e-77 287.7
Cco08g1918 . 11 256 Response Regulator Gene Family AT2G25180 55.6 9.0e-69 258.5
Cco06g0479 . 108 341 Response Regulator Gene Family AT2G01760 50.6 5.7e-54 208.4
Cco06g1405 . 79 303 Response Regulator Gene Family AT2G01760 52.6 7.2e-49 191.4
Cco08g1918 . 72 259 Response Regulator Gene Family AT2G01760 51.0 3.6e-48 189.1
Cco08g1918 . 9 258 Response Regulator Gene Family AT5G58080 50.6 6.7e-62 235.7
Cco01g1797 . 70 615 Response Regulator Gene Family AT5G61380 50.3 2.7e-140 496.1
Cco04g1069 . 38 205 Response Regulator Gene Family AT5G60100 68.6 3.3e-54 209.5
Cco01g0009 . 55 192 Response Regulator Gene Family AT5G60100 61.6 2.1e-45 180.3
Cco04g1069 . 67 205 Response Regulator Gene Family AT5G24470 55.4 3.5e-38 156.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007972 0 1 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 2 1 1 1 1 1 2 1 3 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59867 PF00072 Response_reg 1.20E-24 CL0304 Cco TF