Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1924 ATGGCTTCCATATCACCTTACCGCCCAAACTTTGTGTTCTCTTCATTTCCGACCCGTGTTCCGAACTCAAACCCTCTATTTCATGGAGTTCAATTCCCAGGTTTATCCCACCATAAGCCTTTCCTTCGCGGTTCCCTTGCTGTGGCGAGATTTGGGTTTAAACCCGAGTTCTTGCCTGACCCGGATAACGCCGAGGGCTTTGTTAGAGAGTTGTTTGGCAAAGCTGAGAGCGTTCTTTACACGATTGCCGACGCCGCCGTGTCTGCTTCGCCGGAGAATGTTACCACCGCCAAGCAGACTGACGATTGGTTTACGGGGATTACCTATTATATGGAGAGCGTCCTTAAAATTCTTAAGGATGGACTTTCTACTCTACATGTTCCTTATGCCTATGGTTTTGCTATTATACTCCTTACAGTTCTTGTTAAGGCTGCCACGTTTCCTTTAACAAAGAAGCAGGTAGAATCTGCAATGGCGATGCGTTCTTTGCAACCACAAGTGAAGGCTGTTCAACAACGCTATGCTGGGGATCAGGAGAGGATTCAACTTGAGACTGCTAGACTGTACAAATTAGCTGGCATAAACCCATTGGCAGGATGCCTGCCCACGTTGGCAACAATTCCTGTATGGATTGGACTATACAGGGCTCTTTCAAATGTGGCCAACGAGGGTCTCCTCACGGAAGGTTTTTTCTGGATACCCTCTCTAGCTGGTCCAACTACGATTGCCTCTCGACAAAATGGGAGTGGTATTTCTTGGCTCTTTCCATTTGTTGATGGTCACCCACCACTTGGGTGGTCAGATACCTTCGCGTATCTTGTCTTGCCTGTGTTGCTGGTCGTTTCGCAGTACATCTCTGTTCAAATTATGCAATCATCGCAGACTAATGATCCAAGCATGAAGAGTTCTCAAGCGATAACGAAGTTCCTACCATTAATGATTGGATACTTTGCACTTTCAGTTCCTTCTGGTCTAAGTCTTTATTGGCTTACTAATAACATCTTGAGCACAGCTCAGCAAGCATGGCTTCAAAAGTTAGGTGGTGCCAAAACCCCCGACAAACAGTTCATTGATGAAATCATCAAACAAGAACAAGAACAAACCCGTGTCCAGAGCGAAGCGCCCAAGTTAAACTCAATCTCAAGTGGCACAGTAGCCCGACAAGAAGAGAAGCTGACAGCAGAAGGGCTAAAGCCTGGTGAAAGATTTAAACAGTTGAAGGAGCAAGAGGCTAGGTTAAGACAGCAAAGAGAAGAAGAAAAAAGGAAAGCTGAAAAGGTAGCCAAGGCTGAATCTCTGACAATAAATGACAGTGACAAGAGTGCAACTGTTGGAGTTGTCAATGGCAGTCTTTCTAGGCAGGATGTAAAGGAGGATCGGAACTCCATTCCCACGACTTCTAGGCAAAGAACTGATGTGGACAACGAGCCAAGTGCAACTCAAGGAGAGGGAGTACTCGAGACATACACCAGGGTGGCCAAGGATGCCAAACTAAACGGAGAAGAACAAAGAGAGTAA 1518 46.18 MASISPYRPNFVFSSFPTRVPNSNPLFHGVQFPGLSHHKPFLRGSLAVARFGFKPEFLPDPDNAEGFVRELFGKAESVLYTIADAAVSASPENVTTAKQTDDWFTGITYYMESVLKILKDGLSTLHVPYAYGFAIILLTVLVKAATFPLTKKQVESAMAMRSLQPQVKAVQQRYAGDQERIQLETARLYKLAGINPLAGCLPTLATIPVWIGLYRALSNVANEGLLTEGFFWIPSLAGPTTIASRQNGSGISWLFPFVDGHPPLGWSDTFAYLVLPVLLVVSQYISVQIMQSSQTNDPSMKSSQAITKFLPLMIGYFALSVPSGLSLYWLTNNILSTAQQAWLQKLGGAKTPDKQFIDEIIKQEQEQTRVQSEAPKLNSISSGTVARQEEKLTAEGLKPGERFKQLKEQEARLRQQREEEKRKAEKVAKAESLTINDSDKSATVGVVNGSLSRQDVKEDRNSIPTTSRQRTDVDNEPSATQGEGVLETYTRVAKDAKLNGEEQRE 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30186796 30191254 + CcPI632755_08g019240.1 Cco08g1924 186398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1924 505 CDD UDM1_RNF168_RNF169-like 361 429 - -
Cco08g1924 505 MobiDBLite consensus disorder prediction 367 431 - -
Cco08g1924 505 MobiDBLite consensus disorder prediction 367 388 - -
Cco08g1924 505 CDD 5TM_YidC_Alb3 132 345 IPR047196 -
Cco08g1924 505 PANTHER OXA1 48 409 IPR001708 GO:0009535(PANTHER)|GO:0010027(PANTHER)|GO:0016020(InterPro)|GO:0032977(InterPro)|GO:0032977(PANTHER)|GO:0051205(PANTHER)|GO:0072598(PANTHER)
Cco08g1924 505 Coils Coil 403 433 - -
Cco08g1924 505 Pfam 60Kd inner membrane protein 131 345 IPR028055 -
Cco08g1924 505 MobiDBLite consensus disorder prediction 391 431 - -
Cco08g1924 505 MobiDBLite consensus disorder prediction 445 505 - -
Cco08g1924 505 NCBIfam membrane protein insertase YidC 131 345 IPR028055 -
Cco08g1924 505 MobiDBLite consensus disorder prediction 466 485 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0170 Cco-Chr3:1665268 Cco08g1924 Cco-Chr8:30186796 4.10E-121 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1924 K03217 - csv:101205346 900.582