Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1926 ATGTGGTCTGTTTCATCTTCTCCAGTAGCCGATCCTGAAGTAGTTGTCCAAGAAGTTCTAACGAGCATCAACAATGCAACAACAAGAAGGAATTTGGGGTTCCTATCCTGCGGAACCGGGAACCCAATAGACGACTGTTGGCGGTGTGATCCCAATTGGGAGAAGAACCGAAAGCGGCTAGCCGACTGCGCCATTGGGTTCGGGAAGAGAGCCATCGGTGGCAAAAACGGCAAATTCTACATTGTCACTGACCCCTCCGATAAGGACGTGGTGAACCCAAAACCAGGCACTCTCCGCCACGCCGTAATCCAAAAGGAACCCTTATGGATCATCTTCAAACGCGACATGGTCATCAAATTAAAAGCAGAGCTTCTGATGAACTCTTTCAAAACCATCGACGGTCGCGGCGCGTCGGTCCACATTGCCGGTGGGCCTTGCATTACCATTCAATTTGTGACCAACATTATAATCCACGGCATCAACATTCACGATTGCAAGCAAGGTGGGAACACGTACGTCAGAGACTCGCCGGAGCATTACGGTTGGAGGACTTTGTCGGACGGCGACGGGATTTCCATATTTGGGGGCAGCCATATTTGGGTGGACCATTGCTCTTTGTCCAATTGTCGAGATGGGCTAATTGATGCGATTCACGGGTCGACGGCTATCACTCTTTCCAACAATTACATGACCCACCATAACAAAGTTATGCTTTTAGGACATAGTGATTCCTATACTCAAGACAAGAACATGCAAGTCACCATTGCTTTTAACCATTTTGGTGAGGGTCTTGTGCAAAGAATGCCACGATGCCGTCATGGATATTTCCATGTGGTGAATAATGACTATACTCATTGGATAATGTACGCCATTGGTGGAAGTGCATCTCCTACTATCAATAGTCAAGGAAATAGATACCTTGCTCCCGATAACCGAGATAGAAAAGAGGTGACAAAACGAGAGGATGCACCGCAAAGCAAATGGAAGAATTGGAATTGGAGATCCGATGGAGATTTAATGTTGAATGGAGCATTCTTTACAAGGTCCGGTGCTGGAGCATCGTCTAGCTATGCGAGAGCATCGAGTTTGAGTGCGAAATCGTCGTCTCTAGTGAGTTCGATGACGGCAAAAGCAGGGGTGCTATCCTGCCGAAAAGGCTCCCGGTGTTAG 1170 47.78 MWSVSSSPVADPEVVVQEVLTSINNATTRRNLGFLSCGTGNPIDDCWRCDPNWEKNRKRLADCAIGFGKRAIGGKNGKFYIVTDPSDKDVVNPKPGTLRHAVIQKEPLWIIFKRDMVIKLKAELLMNSFKTIDGRGASVHIAGGPCITIQFVTNIIIHGINIHDCKQGGNTYVRDSPEHYGWRTLSDGDGISIFGGSHIWVDHCSLSNCRDGLIDAIHGSTAITLSNNYMTHHNKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHWIMYAIGGSASPTINSQGNRYLAPDNRDRKEVTKREDAPQSKWKNWNWRSDGDLMLNGAFFTRSGAGASSSYARASSLSAKSSSLVSSMTAKAGVLSCRKGSRC 389
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30201351 30203433 + CcPI632755_08g019260.1 Cco08g1926 186400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1926 389 Pfam Pectate lyase 127 304 IPR002022 -
Cco08g1926 389 PANTHER PECTATE LYASE 18-RELATED 26 386 IPR045032 GO:0030570(InterPro)
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 87 112 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 123 139 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 360 383 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 187 208 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 267 286 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 331 355 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 63 80 IPR018082 -
Cco08g1926 389 PRINTS Pollen allergen Amb family signature 289 308 IPR018082 -
Cco08g1926 389 SUPERFAMILY Pectin lyase-like 21 383 IPR011050 -
Cco08g1926 389 FunFam Pectate lyase 40 382 - -
Cco08g1926 389 SMART amb_all 115 312 IPR002022 -
Cco08g1926 389 Gene3D - 40 382 IPR012334 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0337 Cco-Chr3:3728773 Cco08g1926 Cco-Chr8:30201351 1.00E-188 dispersed
Cco05g2722 Cco-Chr5:35129545 Cco08g1926 Cco-Chr8:30201351 1.20E-131 dispersed
Cco08g1926 Cco-Chr8:30201351 Cco09g2155 Cco-Chr9:35942371 1.30E-185 dispersed
Cco08g1926 Cco-Chr8:30201351 Cco05g0410 Cco-Chr5:3388023 3.30E-173 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1926 K01728 - csv:101208076 716.842