Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1955 ATGGGCATTTGCAATGCTCAATGCCCAACATCAGCCATCCAGTATGAAACCGGAGAGCAATACGCCAAACCAAATGCGGCTCATTGCCTCCCACTGCCTACATGCCCTCTAATTCAAACCAATTACCTTCGTCTGACTTTTATTAGCTTCAGAATCGGAATAAGGGAGTTGACGATGAGGACTGGATCACCACTTGGATTGTTCATTTTGATCACCGCTCTTCTCTTACTTCAATTATCCACAGTGGCAGACCCCAGATCCCGGACCGTCAAGATACTATGTTCAACCGTGCTAGAGCACAATACAACCGCCTTTGTGCCCAATTTCGTGGCCACAATGCAAATAATCAGCGACCAAATGCGAACCGGTGGGTTTGGAGTCGCAGTTGCGGGTAAAGGCCCGGACGCCAACTACGGCCTTGCTCAATGTTACGGAGATTTGTCGCTGATGGACTGTGTGTTGTGTTATGCGGAAGCCCGTACTGTCCTTCCTCAATGCTTCCCTTTCAACGGCGGCCGGATTTTCCTGGATGGCTGCTTCATGAGGGCTGAGAACTACAGCTTTTATGACGAATTTTCGGGGCCTCTTGACAGGGCTGTGTGCGGTAACAATTCCATCACCAACTCCCTTTTTGGACAGTCGGCCAGGCAGGCTGTGGCCCGAGCAACCCAAACTGCACCCAACAATGGAGGGTATGCCAGAATTCAAGTGGCTCCCCCTGGAACCCCCAATGCCTCCGTTTACCTGTTGGCTCAGTGCTGGAGGAATTTGAATCGCACCTCCTGCACTTCCTGTTTGCAAAACGCCTCTGCTTCTATCTTGAAATGCTTGCCTCGATCCGAAGCAAGAGCCCTCAACACAGGTTGCTTCATGAGATACTCTAACCTTGACTTCTTAAATGCCGAAGCTTCAGCTTCAAGGTCAAGGGGTACTATTATAGAAATTGTAGTCTCCCTGGTGAGTTCTGTTGCTGTTTTAGTCGTTGGAGTGTTGATTGGAATCTACATCTGGAATAACAGATATGTAAAGAAGAAGCGAAGAGGTTCAAACGATGCAAACAAGATGGCAAAAACACTAAACAATAGTAGCTTGAATTTCAAATACTCTACCCTTGAAAAGGCAACAGGATCCTTTGCTGAGGCTAACAAGCTTGGACAAGGAGGATTTGGCACTGTTTATAAGGCAATTCTGTCGGACGGAAGAGAGATAGCTGTGAAGAGGCTTTTCTTCAACAACAAACATAGAGCAGCAGACTTTTACAATGAAGTAAACATAATCAGTAGTGTGGAGCACAAAAACTTAGTACGGTTGCTTGGTTGTAGTTGTTCTGGACCTGAAAGTCTGCTTGTCTATGAATACCTTGCCAACAAGAGTCTCGACCGCTTCATTTTCGATCGAGATAGAGGTAAATCGCTCAATTGGGAGAAGAGATTTGATATCATTGTGGGAACAGTTGAAGGTTTGGCTTACCTTCATGAGAACTCGAAAACCAAGATCATACACAGAGACATCAAGGCTAGTAACATCCTGCTAGACTCCAAGCTTCGAGCTAAAATAGCTGATTTTGGATTAGCTAGATCCTTTGAAGAAGATGAGAGTCACATCAGCACGGCCATTGCTGGAACCTTGGGATACATGGCGCCAGAGTATTTAGCTCATGGGCAGCTAACAGAAAAGGCAGATGTGTACAGTTTTGGTGTGGTTTTGCTGGAGACCGTGACCGGCATACAAAACAGTAGAAGCAAAACCTCTGACTACTTGGAAAGCATAGTACTAATTGCATGGAAGCACTTTCAATCGGGGACAGTGGAAAGGATATTGGATCCGAACCTTATGGTTGAGGAAGATGGGAGCATAAAAGAGGAGATATTGAGAGTGGTGCAGATAGGGCTTCTTTGCACACAGGAGACTGCATCTCTGCGACCCACAATGTCCAAGGTACTGCAGATGCTGATGAAGAAGGAAGAGGAACTTCCGGCGCCGACCAACCCACCGTTCATGGACGAGAGGACAATGGAATTAAACGACACCAGTGGCACTGAGGATCCATCATGCTTCAACCTCACGAAAGCTTCTTCCTCAGCGGCCACCGTGACCCATAGTTCATTTCATCCCAGAACCCCAGATTCCATGGCGATCCAGCTTGTTTATGCTTCCAAATATGTCCTAGTTTCAATCATAACTATTCTTCTGCTGCTCGCAACTTCGACTCTGGGGAAGCCAAGAGATCAAACTGTGAGAGTCATCTGCGGGAAAGAACTGGAGCATAACACCACCGCCTACGTCCCAAACTTTTTTGGTTCCATGGAAAAAGTTAGACAACAAATCGGAACTTCAGGATTTGGAACCGCCGGTACAGGAATAGGACCTGATGCCAGCTATGGGCTTGCCCAATGCCATGGAGATCTCTCACCCCTTGAATGTGTGCTGTGTCATTCTCAAGCACGTACAATGCTCCCCCAATGCTTCCCTTTCAACGGCGGCCGAGCTTTCATTGATGGCTGCTTCCTGAGGTTCGAAAACTATACCTTTTTCGACGAATACAAAGGACCTGAAGACACTGCAGTTTGTGGGAACTTCACCCAAAATGACCCCAACTATAGACAAGCAGTCAAGGAGGCAGTGATGCAAGTGGTTAACGGTGCACCAGACAACAGAGGCTTTGCGAAAGCTCGAATGGCTGTGGCTGGGATGGCAAATGAGTCCGCCGCTTATGCTCTGGGTCAGTGCTGGAGAAGTTTGAACCGCAGCTCTTGCAGTTCATGTTTGTTAATTGCTTCTGCTTCAATGTTGCGATGTTTACCTCAATCTGAAGGACGAGCACTGAACACAGGCTGCTTCATGAGATATTCAAATACAGACTTCCTCAACAAGGACATCAAAAATAGTTCCAGAGGTGGCACAAGAACTGAATTGATAGTTTCAGTTTTGAGTTCTGTTGTTGTTTTGATAGTTGGCCTGGCGATTGGAGCTTATATCTGGAAGCGCAGACATATACAAAAGAAAAGGAAAGGAGGTTCAACTGATGTGAAGAAGTTTGCAAAAACTCTTCAAGATAGTAACTTGGAATTCAAGTACTCAACCCTTGAAAAAGCTACCAATAATTTCAGCCTTGATAACAAGATTGGACAGGGCGGGTTTGGCTCTGTTTATAAGGGAACTCTATCCGATGGAAGAGAAATTGCTGTGAAGAGATTCTTCTTTGATAACAGACATAGAGCAGCAGATTTCTACAATGAAGTAAACATGATCAGCAGTGTCGAACATAAAAATCTGGTAAGATTACTTGGATGCAGTTGTTCTGGACCTGAAAGCCTTCTTGTTTATGAATTCCTACCAAACAAGAGTCTCGATCGCTTCATTTTCGATACCAGTAGCAGTAAAGCTCTTGATTGGGATAAGAGATACAACATCATCACTGGAACGGTTGAAGGTTTAATATATCTACACGAAAATCCAAAGATCAAAATCATACACAGGGATATAAAGGCGAGTAATATCTTGCTGGATCTAAAGCTTCAAGCGAAAATAGCAGATTTTGGATTAGCAAGGTCTTTCCAAGAAAGCAAGAGCCATATTAGCACGGCTGTTGCAGGAACCCTAGGATATATGGCTCCGGAGTATCTAGCTTATGGCCAGTTATCAGAAAAGGCCGACGTCTACAGCTTTGGAGTGCTTTTGTTAGAAATTGTTACAGGATTGCAATATAGTGGCATTCAAGTCTCCGGCAACATTGAAAGTCTGATCACTGCTATGTGGAGACATTTCCAAGCAGGCACAGTTGAGAGATTATTTGATCCAAATCTCAATCTTCAGAATCACTATAACAAGAAAGTGAAGGATGAGGTAAAGAGAGTGGTGCACATAGGGCTCTTATGCATCCAGGAGATTCCATCTCTACGGCCAACAATGTCGAAGGTTCTACGAATGCTGACCATGGAGGAAGAGCATCTTCCTCCACCCACCAAACCACCCTTCACGGATGAGATGACCATGGAACTTGATGATTCATGCAAGTACTCACGATGTTGTTCTAATACGGAGGGATCTTCTTCTACTGCCACAGTCGGCCATAGTTCTTTCCATCCCAGATAA 4095 45.37 MGICNAQCPTSAIQYETGEQYAKPNAAHCLPLPTCPLIQTNYLRLTFISFRIGIRELTMRTGSPLGLFILITALLLLQLSTVADPRSRTVKILCSTVLEHNTTAFVPNFVATMQIISDQMRTGGFGVAVAGKGPDANYGLAQCYGDLSLMDCVLCYAEARTVLPQCFPFNGGRIFLDGCFMRAENYSFYDEFSGPLDRAVCGNNSITNSLFGQSARQAVARATQTAPNNGGYARIQVAPPGTPNASVYLLAQCWRNLNRTSCTSCLQNASASILKCLPRSEARALNTGCFMRYSNLDFLNAEASASRSRGTIIEIVVSLVSSVAVLVVGVLIGIYIWNNRYVKKKRRGSNDANKMAKTLNNSSLNFKYSTLEKATGSFAEANKLGQGGFGTVYKAILSDGREIAVKRLFFNNKHRAADFYNEVNIISSVEHKNLVRLLGCSCSGPESLLVYEYLANKSLDRFIFDRDRGKSLNWEKRFDIIVGTVEGLAYLHENSKTKIIHRDIKASNILLDSKLRAKIADFGLARSFEEDESHISTAIAGTLGYMAPEYLAHGQLTEKADVYSFGVVLLETVTGIQNSRSKTSDYLESIVLIAWKHFQSGTVERILDPNLMVEEDGSIKEEILRVVQIGLLCTQETASLRPTMSKVLQMLMKKEEELPAPTNPPFMDERTMELNDTSGTEDPSCFNLTKASSSAATVTHSSFHPRTPDSMAIQLVYASKYVLVSIITILLLLATSTLGKPRDQTVRVICGKELEHNTTAYVPNFFGSMEKVRQQIGTSGFGTAGTGIGPDASYGLAQCHGDLSPLECVLCHSQARTMLPQCFPFNGGRAFIDGCFLRFENYTFFDEYKGPEDTAVCGNFTQNDPNYRQAVKEAVMQVVNGAPDNRGFAKARMAVAGMANESAAYALGQCWRSLNRSSCSSCLLIASASMLRCLPQSEGRALNTGCFMRYSNTDFLNKDIKNSSRGGTRTELIVSVLSSVVVLIVGLAIGAYIWKRRHIQKKRKGGSTDVKKFAKTLQDSNLEFKYSTLEKATNNFSLDNKIGQGGFGSVYKGTLSDGREIAVKRFFFDNRHRAADFYNEVNMISSVEHKNLVRLLGCSCSGPESLLVYEFLPNKSLDRFIFDTSSSKALDWDKRYNIITGTVEGLIYLHENPKIKIIHRDIKASNILLDLKLQAKIADFGLARSFQESKSHISTAVAGTLGYMAPEYLAYGQLSEKADVYSFGVLLLEIVTGLQYSGIQVSGNIESLITAMWRHFQAGTVERLFDPNLNLQNHYNKKVKDEVKRVVHIGLLCIQEIPSLRPTMSKVLRMLTMEEEHLPPPTKPPFTDEMTMELDDSCKYSRCCSNTEGSSSTATVGHSSFHPR 1364
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30375461 30381961 + CcPI632755_08g019550.1 Cco08g1955 186429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1955 1364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1157 1169 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 ProSiteProfiles Gnk2-homologous domain profile. 193 298 IPR002902 -
Cco08g1955 1364 ProSitePatterns Serine/Threonine protein kinases active-site signature. 499 511 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 2 454 659 - -
Cco08g1955 1364 CDD STKc_IRAK 1042 1312 - -
Cco08g1955 1364 CDD STKc_IRAK 384 653 - -
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 2 87 188 - -
Cco08g1955 1364 SUPERFAMILY Protein kinase-like (PK-like) 363 672 IPR011009 -
Cco08g1955 1364 SUPERFAMILY Protein kinase-like (PK-like) 1020 1336 IPR011009 -
Cco08g1955 1364 Gene3D Phosphorylase Kinase; domain 1 338 453 - -
Cco08g1955 1364 Gene3D Phosphorylase Kinase; domain 1 996 1111 - -
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 3 853 955 - -
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 2 1112 1319 - -
Cco08g1955 1364 FunFam Putative DUF26-domain receptor-like protein kinase family protein 1006 1111 - -
Cco08g1955 1364 ProSitePatterns Protein kinases ATP-binding region signature. 1042 1064 IPR017441 GO:0005524(InterPro)
Cco08g1955 1364 ProSiteProfiles Protein kinase domain profile. 1036 1313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 FunFam Putative DUF26-domain receptor-like protein kinase family protein 347 453 - -
Cco08g1955 1364 Pfam Protein kinase domain 1037 1309 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 Pfam Protein kinase domain 380 650 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 Pfam Salt stress response/antifungal 757 842 IPR002902 -
Cco08g1955 1364 Pfam Salt stress response/antifungal 201 295 IPR002902 -
Cco08g1955 1364 Pfam Salt stress response/antifungal 857 952 IPR002902 -
Cco08g1955 1364 Pfam Salt stress response/antifungal 101 186 IPR002902 -
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 3 197 298 - -
Cco08g1955 1364 PANTHER CYSTEINE-RICH RECEPTOR-LIKE PROTEIN KINASE 3 223 682 IPR052059 GO:0004674(PANTHER)|GO:0006468(PANTHER)
Cco08g1955 1364 ProSitePatterns Protein kinases ATP-binding region signature. 384 406 IPR017441 GO:0005524(InterPro)
Cco08g1955 1364 ProSiteProfiles Gnk2-homologous domain profile. 87 188 IPR002902 -
Cco08g1955 1364 ProSiteProfiles Gnk2-homologous domain profile. 848 955 IPR002902 -
Cco08g1955 1364 SMART serkin_6 1036 1313 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 SMART serkin_6 378 624 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 ProSiteProfiles Gnk2-homologous domain profile. 743 844 IPR002902 -
Cco08g1955 1364 Gene3D - 744 844 IPR038408 -
Cco08g1955 1364 Gene3D - 197 298 IPR038408 -
Cco08g1955 1364 Gene3D - 87 188 IPR038408 -
Cco08g1955 1364 Gene3D - 854 955 IPR038408 -
Cco08g1955 1364 ProSiteProfiles Protein kinase domain profile. 378 667 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1955 1364 Gene3D Transferase(Phosphotransferase) domain 1 1112 1319 - -
Cco08g1955 1364 Gene3D Transferase(Phosphotransferase) domain 1 454 663 - -
Cco08g1955 1364 FunFam Cysteine-rich receptor-like protein kinase 2 743 844 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1955 Cco-Chr8:30375461 Cco10g1386 Cco-Chr10:26924363 1.90E-130 dispersed
Cco06g0232 Cco-Chr6:2458378 Cco08g1955 Cco-Chr8:30375461 1.10E-24 transposed
Cco05g2819 Cco-Chr5:35875949 Cco08g1955 Cco-Chr8:30375461 1.60E-132 wgd
Cco06g1921 Cco-Chr6:29450132 Cco08g1955 Cco-Chr8:30375461 8.50E-52 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87063 PF00069 Pkinase 5.50E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1955 - - - 0.0