Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1957 ATGGACTCCCGTGGTTTGCGCTGGGAAGCAGCTTTAGGGGCTCTCCCTCTCTCTCACCCACGCACTGTCTCTTCAGTCTTCCTGTTGGTTAGTGCTTGCCACTTTCTGTTGACAAATAGTCTGCTGTGGGTCTTTCAGCTTCATAATGTGTCTTACACGTGTGACCTGCCTGCTTCATACCTGTATCCTCCGATTCGGCATTTGGGTGTCCCAGATTCCCACTCGATCGTGGCCCGTTGGTTGTGCTCCCGAGCCCGTAGTTTAGTTCTCGCCTCCGTACTTGAACTTTTAATCTGGTGTATTGTAGATGAGGATGCTATGTCATCAGATGATGAGCTTAACTGGGGAGAGAGGGAATTACAAGATGCTCAAATGAGGTTGGAAGACAAAGGTCTTAAAGATATGCTCTTAAGTAGATTTGGCAGCCACATTGGTACCTTGAAGCTGGAATTTTCAAAGAAGAAGAAGAAAGGAAAACTACCTAAAGAAGGAAGGAAAGTACTGTTCGAGTGGTGGAATGTTCACTATAAATGGCCATATCCTACGGAAGCTGATAAGGTTGCGCTGGCAGAGACAACAGGACTAGATCCCAAGCAAATTAACAATTGGTTTATTAATCAACGAAAGCGGCACTGGAAACCTTCTGAAAGTATGCAATATGCAAATATGGATAATGTGGCTGATCAATTTTACGCTAGGCTTGACTCTTGTGAATGA 717 45.05 MDSRGLRWEAALGALPLSHPRTVSSVFLLVSACHFLLTNSLLWVFQLHNVSYTCDLPASYLYPPIRHLGVPDSHSIVARWLCSRARSLVLASVLELLIWCIVDEDAMSSDDELNWGERELQDAQMRLEDKGLKDMLLSRFGSHIGTLKLEFSKKKKKGKLPKEGRKVLFEWWNVHYKWPYPTEADKVALAETTGLDPKQINNWFINQRKRHWKPSESMQYANMDNVADQFYARLDSCE 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30384952 30390568 - CcPI632755_08g019570.1 Cco08g1957 186431
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1957 238 SUPERFAMILY Homeodomain-like 152 224 IPR009057 -
Cco08g1957 238 ProSitePatterns 'Homeobox' domain signature. 189 212 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco08g1957 238 SMART ELK_2 131 152 IPR005539 GO:0003677(InterPro)
Cco08g1957 238 Gene3D - 150 227 - -
Cco08g1957 238 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 33 - -
Cco08g1957 238 ProSiteProfiles 'Homeobox' domain profile. 151 214 IPR001356 GO:0003677(InterPro)
Cco08g1957 238 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 111 223 IPR050224 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Cco08g1957 238 SMART HOX_1 153 218 IPR001356 GO:0003677(InterPro)
Cco08g1957 238 Pfam ELK domain 132 152 IPR005539 GO:0003677(InterPro)
Cco08g1957 238 CDD homeodomain 165 215 IPR001356 GO:0003677(InterPro)
Cco08g1957 238 Pfam Homeobox KN domain 171 210 IPR008422 GO:0003677(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1861 Cco-Chr8:29647500 Cco08g1957 Cco-Chr8:30384952 1.50E-33 dispersed
Cco05g2818 Cco-Chr5:35868572 Cco08g1957 Cco-Chr8:30384952 2.70E-49 wgd
Cco06g1911 Cco-Chr6:29344686 Cco08g1957 Cco-Chr8:30384952 3.40E-24 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59869 PF05920 Homeobox_KN 2.90E-17 CL0123 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1957 - - - 0.0