Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco08g1959 ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCTTGGAACTTGCTTTTGCTACGCTATCTCCTTCTGGTGTGAACTACGAAGTTGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCAGCTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAATCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAACGTACTTAGTGGCCAAATACCCAGCTCCCTCGGAGACTTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAGCAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATACTCTTGAAGGAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCCTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGCCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACCGATCACTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTTTGGTAGCGGTCAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGCAGCGTTGCATCTCGGTTAAGAGAGCATATTCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCATGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGCGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCTGTCGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGGCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTCGGGTTTGGAATCTTGCTTTTGGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGGCCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATACCGACCGTGCGAGAATCCCCCTCAACGAATCTGTGGAGGTGGCGGAAGGCGATTGAATAAGGCGGAAGGGGCGGATGCGGACGTGTTGCTTAATGCTCTGGGCTACGCCATGGACCCCAGGAAACTTGGATTCCCCGAGCAGATTTTATCGCCGAGGAGAAGAGTTGTTCCTGGATTTGGTCTTGGCATTTCCGTTTCTCTCATTCTTCTTAGCTTTCTTTTGCTCTACACTTCTTCTCATGGCAAATTTTTCTTCTCTGTTTATAATCAATCCGCTTCCGTTGATTCTCTCTTTTCTTCCTGGTCTTTCTCTTTTTCATCTCCTTCCTTCTCTGATTTCACTGCTAATTCTTCCAAGTTCTCCACCTATGATGCTTCCCTTCCTTCCCATTTCCCCTCACTCCACAATCATACTCGCCATATCAATGCCACCTCTCAACCCAACTCCCATCCGCCAAACGCCTCCGGATTTGGGAATGCAACTTTCTCCCTTCAATCCGAAAATGTTACTGCAAATGCAACACTTTCCAGCCCCCCAAAGTTTGACCCCCAACACATTCTCCCCCGTAACTCCACTTCTTTTAACATCAGTACTACTCAATTTCAGAAACACAACAATCATTCTTCCAGCGCTGAGGACAAGAGGCCGTCAGAAGGAAATGGTGGGAGAAATTCAAGCGACATAATTCAAATTACCAACAACTCTCAACCGGTGGCAACATCTGATAACAGTTTTGACGATGAATGTGATATCTTTGATGGTGAATGGGTGAGGGATAATTCCAAGCCGTATTACCCTTTAGGTTCTTGCCCTTACATTGATAGGGACTTCGATTGTCATCTTAATAAGAGGCCAGACGATGGCTATGTGAAATGGAAATGGCAGCCGTATGGGTGTAACATTCCAAGTCTGAACGCAACACATTTTCTTGAGGTGTTGAGGGGGAAGAGTCTGGTGTTTGTTGGGGATTCATTGAATAGGAACATGTGGGAGTCTCTCGTGTGCATTCTTCGTCATAGTATAAGCGACAAGACAAGAGTGTATGAGATATCTGGAAGGACAGAGTTCAAGAAGAAGGGCTTCTATGCCTTCCGATTCGAGGACTATAATTGTTCCGTGGATTTTGTTAGTTCTCCATTCCTAGTTAGGGAGTCTTCATTCAAAAGAAAGAATGGAACCATCGTGACATTAAGATTGGATCAAATGGACCCAACAACCAAAATGTATCGGGACGCGGATGTTTTGGTCTTTAATACAGGCCATTGGTGGACTCATGAGAAAACATCGAGGGGAGAAGACTATTACCAAGAAGGTAACCATGTGCACCCAAGACTCAAGGTGTTGGAAGCGTTTAAGAGGGCTCTCACCACTTGGGGTCGATGGATTGACAGCACTGTTGATCCAAATCGAACTCTGGTTTTCTTCAGAGGGTATTCATATTCTCATTTCAGTGGTGGTGAGTGGAACTCTGGAGGGCAATGCAACATTGAAATGGAACCAATTTATAACAAATCACACTTGGGCAAATACCCTAAGAAAATGAGGGCACTGGAATATGTGATTCAGCAGATGAAAACGCCAGTGTCATACTTAAACATAACCAGGCTCACTCATTATCGGAAGGACGCACACCCTTCAATTTATAGAATGGAGTACAAGACAGAAGCAGAAAAACGTGCAGGCCTCCGAGTTCAAGATTGCAGCCATTGGTGCTTGCCCGGGGGATATGAGGAGGAAGGTGAGACATTGGCATTGTATTCCCTCACCGCATCTCCATTAGCTTTTCTTCGAGGCCCGTGGTCGTGCTCGTGTTCATGGTCCATAACCCACAGCGCTGCAGCACCACGGCTTCTCTCTCATTCAACAGTTGAGCTCTCAGAAAAGCTAGGGGAGAAGCTGCCTCCTCCATTCTGGTCTTTAAATACACAACCGAACTGTTACCCCATTATAATACTCTCACCATCAAAAGTTGCTATTCCAAGCTGGATAAGCTTCAAATGA 3774 45.07 MEPPFLLWKPVFVVLALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVLSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPSNCSAIFPEPLSFAPDTLEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLREHIHGQPALDWAMRKRIAMGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRPCENPPQRICGGGGRRLNKAEGADADVLLNALGYAMDPRKLGFPEQILSPRRRVVPGFGLGISVSLILLSFLLLYTSSHGKFFFSVYNQSASVDSLFSSWSFSFSSPSFSDFTANSSKFSTYDASLPSHFPSLHNHTRHINATSQPNSHPPNASGFGNATFSLQSENVTANATLSSPPKFDPQHILPRNSTSFNISTTQFQKHNNHSSSAEDKRPSEGNGGRNSSDIIQITNNSQPVATSDNSFDDECDIFDGEWVRDNSKPYYPLGSCPYIDRDFDCHLNKRPDDGYVKWKWQPYGCNIPSLNATHFLEVLRGKSLVFVGDSLNRNMWESLVCILRHSISDKTRVYEISGRTEFKKKGFYAFRFEDYNCSVDFVSSPFLVRESSFKRKNGTIVTLRLDQMDPTTKMYRDADVLVFNTGHWWTHEKTSRGEDYYQEGNHVHPRLKVLEAFKRALTTWGRWIDSTVDPNRTLVFFRGYSYSHFSGGEWNSGGQCNIEMEPIYNKSHLGKYPKKMRALEYVIQQMKTPVSYLNITRLTHYRKDAHPSIYRMEYKTEAEKRAGLRVQDCSHWCLPGGYEEEGETLALYSLTASPLAFLRGPWSCSCSWSITHSAAAPRLLSHSTVELSEKLGEKLPPPFWSLNTQPNCYPIIILSPSKVAIPSWISFK 1257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
8 30404864 30412560 - CcPI632755_08g019590.1 Cco08g1959 186433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco08g1959 1257 SMART serkin_6 298 571 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1959 1257 FunFam Somatic embryogenesis receptor-like kinase 1 375 591 - -
Cco08g1959 1257 MobiDBLite consensus disorder prediction 725 751 - -
Cco08g1959 1257 Pfam Leucine rich repeat N-terminal domain 31 70 IPR013210 -
Cco08g1959 1257 ProSitePatterns Serine/Threonine protein kinases active-site signature. 421 433 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1959 1257 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Cco08g1959 1257 ProSiteProfiles Protein kinase domain profile. 298 581 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco08g1959 1257 Gene3D Ribonuclease Inhibitor 30 209 IPR032675 -
Cco08g1959 1257 ProSitePatterns Protein kinases ATP-binding region signature. 304 326 IPR017441 GO:0005524(InterPro)
Cco08g1959 1257 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 892 1165 IPR026057 GO:0016740(InterPro)
Cco08g1959 1257 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515(InterPro)
Cco08g1959 1257 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 12 596 - -
Cco08g1959 1257 ProSiteProfiles Leucine-rich repeat profile. 122 145 IPR001611 GO:0005515(InterPro)
Cco08g1959 1257 FunFam Putative LRR receptor-like serine/threonine-protein kinase 30 210 - -
Cco08g1959 1257 FunFam Somatic embryogenesis receptor kinase 1 267 374 - -
Cco08g1959 1257 SUPERFAMILY L domain-like 31 192 - -
Cco08g1959 1257 Gene3D Phosphorylase Kinase; domain 1 267 374 - -
Cco08g1959 1257 Pfam Protein tyrosine and serine/threonine kinase 301 571 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco08g1959 1257 Gene3D Transferase(Phosphotransferase) domain 1 375 590 - -
Cco08g1959 1257 Pfam PMR5 N terminal Domain 839 891 IPR025846 -
Cco08g1959 1257 MobiDBLite consensus disorder prediction 791 819 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g1462 Cco-Chr6:25088066 Cco08g1959 Cco-Chr8:30404864 1.40E-165 dispersed
Cco08g1959 Cco-Chr8:30404864 Cco10g0883 Cco-Chr10:18529458 4.30E-137 dispersed
Cco08g1959 Cco-Chr8:30404864 Cco11g0522 Cco-Chr11:5505113 3.80E-186 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87064 PF13839 PC-Esterase 4.90E-90 CL0264 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco08g1959 - - - 0.0