Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco08g1959 | ATGGAACCACCTTTTCTGTTATGGAAACCGGTTTTTGTAGTTTTGGCACTCTTGGAACTTGCTTTTGCTACGCTATCTCCTTCTGGTGTGAACTACGAAGTTGTAGCTTTGATGGCCATAAAAAATGATTTAATAGATCCCCACAATGTTTTGGAGAACTGGGATTCTAATTCTGTGGATCCTTGTAGCTGGAGAATGGTCACCTGTTCTCCAGATGGATATGTTTCAGCTTTGGGGCTACCTAGCCAGAGTTTGTCCGGGGTCTTATCACCGGGGATTGGAAATCTCAGTAAGTTGGAATCAGTGTTGCTTCAGAACAATGACATTTCAGGACCAATTCCTGCAACCATTGGAAAGTTAGAGAACCTCCAGACTCTTGATCTCTCCAACAACGTACTTAGTGGCCAAATACCCAGCTCCCTCGGAGACTTGAAGAAGCTGAACTATTTGCGACTGAATAACAACAGCCTAACTGGACCTTGTCCTGAATCTCTATCCAAAGTTGAAGGTCTCACGCTCGTGGACCTTTCATACAACAACTTGAGTGGCTCCTTACCCAAAATATCAGCAAGAACATTCAAAATTGTTGGTAACCCTCTGATCTGTGGTCCAAGCAACTGTTCTGCTATCTTTCCAGAGCCATTGTCGTTTGCCCCAGATACTCTTGAAGGAAATTTGGGGTTTGGTAAGAGCCACCGCAAGGCAATTGCCTTTGGGGCAAGTTTTAGTGCTGCTTTTATTGTATTAGTCCTTATTGGACTACTTGTCTGGTGGAGATACAGACACAACCAGCAGATTTTCTTTGATGTAAATGATCAATATGACCCAGAGGTACGTTTGGGCCATTTGAGAAGGTACACATTCAAGGAACTTAGGGCAGCAACCGATCACTTCAACTCAAAGAATATCTTGGGAAGAGGTGGGTTTGGAATTGTGTACAAGGGATGCTTAAATGATGGGACTTTGGTAGCGGTCAAAAGGTTGAAGGATTATAACACTGCCGGTGGGGAGATCCAATTTCAGACTGAAGTAGAGATGATAAGCTTAGCTGTACACCGAAATCTTCTCAAGCTTTTTGGCTTCTGTTCTACTGAGAGTGAAAGACTTCTGGTTTACCCATTCATGCCCAATGGCAGCGTTGCATCTCGGTTAAGAGAGCATATTCATGGGCAGCCGGCTCTAGATTGGGCAATGAGAAAGAGAATAGCCATGGGCACAGCTAGAGGATTGGTGTACTTGCACGAGCAGTGTGACCCCAAAATTATTCATCGCGATGTGAAGGCCGCCAACATTCTCCTTGATGAAGACTTCGAGGCTGTCGTTGGAGACTTTGGGTTGGCCAAACTTTTGGATCACAGGGATTCTCATGTGACTACGGCGGTGCGTGGCACTGTTGGGCATATTGCCCCAGAATACTTATCAACAGGCCAATCATCAGAAAAGACTGATGTTTTCGGGTTTGGAATCTTGCTTTTGGAGTTAATTACTGGTCAGAAGGCTCTGGATTTTGGTCGAGGAGCAAACCAGAAAGGCGTGATGCTCGATTGGGTGAAAAAGTTGCATCAGGAAGGAAAGCTGAATATGATGGTGGATAAGGATCTAAGAGGCAAGTTTGACAGAGTTGAGTTAGAGGAAATGGTCCAGGTTGCCCTGTTATGCACTCAATTCAATCCTTCTCACCGGCCCAAAATGTCTGAAGTATTAAAAATGTTGGAAGGCGATGGTTTAGCTGAGAAATGGGAAGCATCACAGCACATTGAAACGCCAAGATACCGACCGTGCGAGAATCCCCCTCAACGAATCTGTGGAGGTGGCGGAAGGCGATTGAATAAGGCGGAAGGGGCGGATGCGGACGTGTTGCTTAATGCTCTGGGCTACGCCATGGACCCCAGGAAACTTGGATTCCCCGAGCAGATTTTATCGCCGAGGAGAAGAGTTGTTCCTGGATTTGGTCTTGGCATTTCCGTTTCTCTCATTCTTCTTAGCTTTCTTTTGCTCTACACTTCTTCTCATGGCAAATTTTTCTTCTCTGTTTATAATCAATCCGCTTCCGTTGATTCTCTCTTTTCTTCCTGGTCTTTCTCTTTTTCATCTCCTTCCTTCTCTGATTTCACTGCTAATTCTTCCAAGTTCTCCACCTATGATGCTTCCCTTCCTTCCCATTTCCCCTCACTCCACAATCATACTCGCCATATCAATGCCACCTCTCAACCCAACTCCCATCCGCCAAACGCCTCCGGATTTGGGAATGCAACTTTCTCCCTTCAATCCGAAAATGTTACTGCAAATGCAACACTTTCCAGCCCCCCAAAGTTTGACCCCCAACACATTCTCCCCCGTAACTCCACTTCTTTTAACATCAGTACTACTCAATTTCAGAAACACAACAATCATTCTTCCAGCGCTGAGGACAAGAGGCCGTCAGAAGGAAATGGTGGGAGAAATTCAAGCGACATAATTCAAATTACCAACAACTCTCAACCGGTGGCAACATCTGATAACAGTTTTGACGATGAATGTGATATCTTTGATGGTGAATGGGTGAGGGATAATTCCAAGCCGTATTACCCTTTAGGTTCTTGCCCTTACATTGATAGGGACTTCGATTGTCATCTTAATAAGAGGCCAGACGATGGCTATGTGAAATGGAAATGGCAGCCGTATGGGTGTAACATTCCAAGTCTGAACGCAACACATTTTCTTGAGGTGTTGAGGGGGAAGAGTCTGGTGTTTGTTGGGGATTCATTGAATAGGAACATGTGGGAGTCTCTCGTGTGCATTCTTCGTCATAGTATAAGCGACAAGACAAGAGTGTATGAGATATCTGGAAGGACAGAGTTCAAGAAGAAGGGCTTCTATGCCTTCCGATTCGAGGACTATAATTGTTCCGTGGATTTTGTTAGTTCTCCATTCCTAGTTAGGGAGTCTTCATTCAAAAGAAAGAATGGAACCATCGTGACATTAAGATTGGATCAAATGGACCCAACAACCAAAATGTATCGGGACGCGGATGTTTTGGTCTTTAATACAGGCCATTGGTGGACTCATGAGAAAACATCGAGGGGAGAAGACTATTACCAAGAAGGTAACCATGTGCACCCAAGACTCAAGGTGTTGGAAGCGTTTAAGAGGGCTCTCACCACTTGGGGTCGATGGATTGACAGCACTGTTGATCCAAATCGAACTCTGGTTTTCTTCAGAGGGTATTCATATTCTCATTTCAGTGGTGGTGAGTGGAACTCTGGAGGGCAATGCAACATTGAAATGGAACCAATTTATAACAAATCACACTTGGGCAAATACCCTAAGAAAATGAGGGCACTGGAATATGTGATTCAGCAGATGAAAACGCCAGTGTCATACTTAAACATAACCAGGCTCACTCATTATCGGAAGGACGCACACCCTTCAATTTATAGAATGGAGTACAAGACAGAAGCAGAAAAACGTGCAGGCCTCCGAGTTCAAGATTGCAGCCATTGGTGCTTGCCCGGGGGATATGAGGAGGAAGGTGAGACATTGGCATTGTATTCCCTCACCGCATCTCCATTAGCTTTTCTTCGAGGCCCGTGGTCGTGCTCGTGTTCATGGTCCATAACCCACAGCGCTGCAGCACCACGGCTTCTCTCTCATTCAACAGTTGAGCTCTCAGAAAAGCTAGGGGAGAAGCTGCCTCCTCCATTCTGGTCTTTAAATACACAACCGAACTGTTACCCCATTATAATACTCTCACCATCAAAAGTTGCTATTCCAAGCTGGATAAGCTTCAAATGA | 3774 | 45.07 | MEPPFLLWKPVFVVLALLELAFATLSPSGVNYEVVALMAIKNDLIDPHNVLENWDSNSVDPCSWRMVTCSPDGYVSALGLPSQSLSGVLSPGIGNLSKLESVLLQNNDISGPIPATIGKLENLQTLDLSNNVLSGQIPSSLGDLKKLNYLRLNNNSLTGPCPESLSKVEGLTLVDLSYNNLSGSLPKISARTFKIVGNPLICGPSNCSAIFPEPLSFAPDTLEGNLGFGKSHRKAIAFGASFSAAFIVLVLIGLLVWWRYRHNQQIFFDVNDQYDPEVRLGHLRRYTFKELRAATDHFNSKNILGRGGFGIVYKGCLNDGTLVAVKRLKDYNTAGGEIQFQTEVEMISLAVHRNLLKLFGFCSTESERLLVYPFMPNGSVASRLREHIHGQPALDWAMRKRIAMGTARGLVYLHEQCDPKIIHRDVKAANILLDEDFEAVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGQKALDFGRGANQKGVMLDWVKKLHQEGKLNMMVDKDLRGKFDRVELEEMVQVALLCTQFNPSHRPKMSEVLKMLEGDGLAEKWEASQHIETPRYRPCENPPQRICGGGGRRLNKAEGADADVLLNALGYAMDPRKLGFPEQILSPRRRVVPGFGLGISVSLILLSFLLLYTSSHGKFFFSVYNQSASVDSLFSSWSFSFSSPSFSDFTANSSKFSTYDASLPSHFPSLHNHTRHINATSQPNSHPPNASGFGNATFSLQSENVTANATLSSPPKFDPQHILPRNSTSFNISTTQFQKHNNHSSSAEDKRPSEGNGGRNSSDIIQITNNSQPVATSDNSFDDECDIFDGEWVRDNSKPYYPLGSCPYIDRDFDCHLNKRPDDGYVKWKWQPYGCNIPSLNATHFLEVLRGKSLVFVGDSLNRNMWESLVCILRHSISDKTRVYEISGRTEFKKKGFYAFRFEDYNCSVDFVSSPFLVRESSFKRKNGTIVTLRLDQMDPTTKMYRDADVLVFNTGHWWTHEKTSRGEDYYQEGNHVHPRLKVLEAFKRALTTWGRWIDSTVDPNRTLVFFRGYSYSHFSGGEWNSGGQCNIEMEPIYNKSHLGKYPKKMRALEYVIQQMKTPVSYLNITRLTHYRKDAHPSIYRMEYKTEAEKRAGLRVQDCSHWCLPGGYEEEGETLALYSLTASPLAFLRGPWSCSCSWSITHSAAAPRLLSHSTVELSEKLGEKLPPPFWSLNTQPNCYPIIILSPSKVAIPSWISFK | 1257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
8 | 30404864 | 30412560 | - | CcPI632755_08g019590.1 | Cco08g1959 | 186433 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco08g1959 | 1257 | SMART | serkin_6 | 298 | 571 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1959 | 1257 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 375 | 591 | - | - | |
Cco08g1959 | 1257 | MobiDBLite | consensus disorder prediction | 725 | 751 | - | - | |
Cco08g1959 | 1257 | Pfam | Leucine rich repeat N-terminal domain | 31 | 70 | IPR013210 | - | |
Cco08g1959 | 1257 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 421 | 433 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g1959 | 1257 | SUPERFAMILY | Protein kinase-like (PK-like) | 282 | 575 | IPR011009 | - | |
Cco08g1959 | 1257 | ProSiteProfiles | Protein kinase domain profile. | 298 | 581 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco08g1959 | 1257 | Gene3D | Ribonuclease Inhibitor | 30 | 209 | IPR032675 | - | |
Cco08g1959 | 1257 | ProSitePatterns | Protein kinases ATP-binding region signature. | 304 | 326 | IPR017441 | GO:0005524(InterPro) | |
Cco08g1959 | 1257 | Pfam | GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p | 892 | 1165 | IPR026057 | GO:0016740(InterPro) | |
Cco08g1959 | 1257 | Pfam | Leucine rich repeat | 98 | 157 | IPR001611 | GO:0005515(InterPro) | |
Cco08g1959 | 1257 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 12 | 596 | - | - | |
Cco08g1959 | 1257 | ProSiteProfiles | Leucine-rich repeat profile. | 122 | 145 | IPR001611 | GO:0005515(InterPro) | |
Cco08g1959 | 1257 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 30 | 210 | - | - | |
Cco08g1959 | 1257 | FunFam | Somatic embryogenesis receptor kinase 1 | 267 | 374 | - | - | |
Cco08g1959 | 1257 | SUPERFAMILY | L domain-like | 31 | 192 | - | - | |
Cco08g1959 | 1257 | Gene3D | Phosphorylase Kinase; domain 1 | 267 | 374 | - | - | |
Cco08g1959 | 1257 | Pfam | Protein tyrosine and serine/threonine kinase | 301 | 571 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco08g1959 | 1257 | Gene3D | Transferase(Phosphotransferase) domain 1 | 375 | 590 | - | - | |
Cco08g1959 | 1257 | Pfam | PMR5 N terminal Domain | 839 | 891 | IPR025846 | - | |
Cco08g1959 | 1257 | MobiDBLite | consensus disorder prediction | 791 | 819 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g1462 | Cco-Chr6:25088066 | Cco08g1959 | Cco-Chr8:30404864 | 1.40E-165 | dispersed | |
Cco08g1959 | Cco-Chr8:30404864 | Cco10g0883 | Cco-Chr10:18529458 | 4.30E-137 | dispersed | |
Cco08g1959 | Cco-Chr8:30404864 | Cco11g0522 | Cco-Chr11:5505113 | 3.80E-186 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
87064 | PF13839 | PC-Esterase | 4.90E-90 | CL0264 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco08g1959 | - | - | - | 0.0 |