Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0011 ATGGCTATGTCCTGCAAGGATGGTAACAAACATGGTATCGACAACGGCAAATACGTTCGGTACACACCGGAGCAGGTTGAAGCCCTCGAGCGGCTTTATCACGAATGTCCAAAACCCAGTTCCATTCGTCGTCAGCAGCTTATCAGAGAGTGCCCCATTCTCTCTAACATCGAGCCTAAGCAAATCAAAGTCTGGTTTCAGAATAGAAGATGTCGTGAAAAACAGAGGAAAGAGGCGTCGCGGCTACAAGCTGTGAACAGAAAGCTTACGGCCATGAATAAGCTTTTAATGGAGGAGAATGATAGGCTGCAGAAGCAGGTTTCGCAGTTGGTGTATGAGAATGGCTATTTCCGCCAGCATACTCAGAGTACGACGCTTGGAGCTAAAGATACAAGTTGTGAACCGGTAGTAACAAGCGGTCAACACAATTTGACGTCTCAGCATCCTCCAAGGGATGCTAGCCCTGCAGGACTTTTGTCCATTGCAGAAGAGACTTTAACAGAGTTTCTTTCAAAGGCCACTGGAACTGCCGTGGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCCCTGGTGTGGCTGCACGTGCCTGCGGCCTGGTGGGTCTAGAACCTACTAGAGTTGCTGAAATCCTCAAGGATCAGCCATCGTGGTTTCGCGATTGCCGAGCTGTGGATGTTCTAAATGTGCTGCCAACAGCTAATGGTGGAACCATTGAGCTGCTTTATATGCAGCTCTATGCGCCTACAACATTGGCGCCTGCACGGGACTTCTGGTTGTTGCGCTACACTTCTGTATTGGAAGATGGTAGCCTTGTGATCTGTGAGAGATCACTTAAGAACACTCAGAATGGTCCAACCATGCCTCCAGTGCAGCATTTTGTTAGAGCAGAGATGCTGCCGAGTGGATATCTGATAAGACCATGTGAAGGAGGTGGTTCTATCATTCATATCGTTGATCATATGGATCTGGAGCCATGGAGTGTTCCAGAAGTATTGCGCCCACTGTATGAATCATCCACTGTTCTTGCTCAAAAGATGACTATGGCGGCTCTTCGCCAGTTGAGGCAGATAGCTCATGAAGTTTCACAGTCAAATGTAACAGGCTGGGGTAGACGCCCTGCAGCCTTACGTTCACTTGGTCAGAGGCTTACCCGGGGTTTTAACGAGGCACTTAATGGGTTTAACGACGAAGGGTGGTCTGTGATGGGAAATGATGGAATGGATGACGTAACTATTCTCGTAAATTCATCTCCCGACAAGCTAATGGGATTGAACATTTCATTTGCAAATGGATTTTCTGCCATCAGTAATGCAGTTCTATGTGCTAGAGCATCGATGCTGTTGCAGAATGTGCCTCCTGCAATTCTGCTGAGGTTTCTGCGGGAGCACAGGTCAGAATGGGCAGACAACAATATTGATGCTTATTCAGCTGCTGCTGTTAAGGTTGGCCCATGGAGCTTACCAGGGTCTAGAGTTGGAAGCTTTGGGAATCAAGTGATACTTCCTCTGGCTCATACCATTGAGCATGAAGAGTTTCTAGAAGTGATTAAACTGGAAGGCATTAGCCATACTCCGGAAGATGCAATGATGCCTAGAGAAATGTTTCTACTGCAACTCTGCAGTGGAATGGATGAAAATGCTATTGGCACTTGTGCTGAACTAATCTTTGCTCCAATTGATGCCTCTTTTGCTGATGACGCGCCTCTTTTACCGTCAGGGTTTCGAATCATACCACTTGATTCCGGAAAGGAAGCATCCAGCCCAAATCGCACACTCGATCTTGCTTCTGCTCTTGAAATTGGCCCTGCTGGAAATAGAGCACCAAACGACTCTGTAAATTCTGGCTGTACAAGGTCTGTAATGACGATTGCATTTGAGTTTGCATTTGAGAGCCATATGCAAGAACATGTGGCTTCGATGGCTCGACAATATGTACGTAGTATTATATCATCTGTTCAGAGGGTTGCATTAGCTCTCTCACCTTCTCATTTAAGTTCACATGCTGGACTACGATCTCCACTTGGTACTCCGGAAGCACAGACACTTGCTCGTTGGATCTGCAACAGTTACAGGTGCTACTTGGGGGTGGAGCTGTTAAAATCTGGAAATGAAGGAGGGGAGCTTGTCCTGAAAACATTGTGGCATCATTCGGATGCAATCATGTGCTGCTCTCTAAAGGCACTGCCAGTGTTCACCTTTGCAAATCAGGCAGGCCTCGACATGCTTGAGACAACCTTAGTCGCACTACAAGATATAACTTTGGAAAAGATATTCGACGACCATGGAAAAAAGACGCTCTGCTCAGAATTTCCACAGATAATGCAACAGGGATTTGCTTGTCTTCAAGGAGGCATATGCCTTTCGAGCATGGGCCGACCTGTCTCGTATGAAAGAGCTGTGGCTTGGAAGGTGCTGAATGATGAAGAAAATGCACACTGCATCTGCTTTATGTTTGTGAACTGGTCCTTTGTCTGA 2514 46.9 MAMSCKDGNKHGIDNGKYVRYTPEQVEALERLYHECPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQSTTLGAKDTSCEPVVTSGQHNLTSQHPPRDASPAGLLSIAEETLTEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPTRVAEILKDQPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKMTMAALRQLRQIAHEVSQSNVTGWGRRPAALRSLGQRLTRGFNEALNGFNDEGWSVMGNDGMDDVTILVNSSPDKLMGLNISFANGFSAISNAVLCARASMLLQNVPPAILLRFLREHRSEWADNNIDAYSAAAVKVGPWSLPGSRVGSFGNQVILPLAHTIEHEEFLEVIKLEGISHTPEDAMMPREMFLLQLCSGMDENAIGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSGKEASSPNRTLDLASALEIGPAGNRAPNDSVNSGCTRSVMTIAFEFAFESHMQEHVASMARQYVRSIISSVQRVALALSPSHLSSHAGLRSPLGTPEAQTLARWICNSYRCYLGVELLKSGNEGGELVLKTLWHHSDAIMCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGKKTLCSEFPQIMQQGFACLQGGICLSSMGRPVSYERAVAWKVLNDEENAHCICFMFVNWSFV 837
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 73107 78914 + CcPI632755_09g000110.1 Cco09g0011 186468
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0011 837 SMART HOX_1 14 80 IPR001356 GO:0003677(InterPro)
Cco09g0011 837 Pfam START domain 161 369 IPR002913 GO:0008289(InterPro)
Cco09g0011 837 Coils Coil 72 113 - -
Cco09g0011 837 CDD homeodomain 17 77 IPR001356 GO:0003677(InterPro)
Cco09g0011 837 MobiDBLite consensus disorder prediction 128 154 - -
Cco09g0011 837 FunFam homeobox-leucine zipper protein ATHB-15 196 377 - -
Cco09g0011 837 Pfam MEKHLA domain 694 836 IPR013978 -
Cco09g0011 837 SUPERFAMILY Bet v1-like 160 371 - -
Cco09g0011 837 Pfam Homeodomain 17 75 IPR001356 GO:0003677(InterPro)
Cco09g0011 837 SUPERFAMILY Homeodomain-like 16 80 IPR009057 -
Cco09g0011 837 CDD bZIP 69 108 - -
Cco09g0011 837 CDD START_ArGLABRA2_like 155 371 - -
Cco09g0011 837 Gene3D - 10 83 - -
Cco09g0011 837 Gene3D - 195 379 IPR023393 -
Cco09g0011 837 ProSiteProfiles 'Homeobox' domain profile. 12 76 IPR001356 GO:0003677(InterPro)
Cco09g0011 837 SMART START_1 160 370 IPR002913 GO:0008289(InterPro)
Cco09g0011 837 MobiDBLite consensus disorder prediction 128 150 - -
Cco09g0011 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 10 837 IPR044830 GO:0003700(InterPro)
Cco09g0011 837 FunFam Homeobox-leucine zipper protein REVOLUTA 17 72 - -
Cco09g0011 837 ProSiteProfiles START domain profile. 151 379 IPR002913 GO:0008289(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0821 Cco-Chr3:8987953 Cco09g0011 Cco-Chr9:73107 0.00E+00 dispersed
Cco09g0011 Cco-Chr9:73107 Cco11g1561 Cco-Chr11:28509687 0.00E+00 dispersed
Cco09g0011 Cco-Chr9:73107 Cco04g2301 Cco-Chr4:36539751 0.00E+00 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59872 PF01852 START 2.80E-54 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0011 K09338 - csv:101213106 1678.3