Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0025 ATGTCGTGGCAAACGTACGTGGACGATCACCTGATGTGTGAGATTGAAGGAAACCATCTGACCTCCGCCGCAATCATCGGACACGACGGCAGTGTTTGGGCGCAGAGCTCCTCATTCCCTCAGTTTAAGGCGGAGGAGATATCGGCGATTATGAAGGATTTGGATGAGCCAGGTTCTCTTGCACCAACTGGATTACACCTGGGAGGCACTAAATACATGGTCATCCAAGGAGAGCCTGGATCCGTTGTTCGTGGCAAAAAGGGTGCTGGGGGAATCACTGTGAAGAAAACTGAGAAGGCTGTCATAATTGGGATTTATGATGAACCTTTGACTCCTGGACAATGCAATATGGTGGTTGAAAGGTTGGGAGATTACCTCATTGAACAGGCTTTGTAG 396 48.99 MSWQTYVDDHLMCEIEGNHLTSAAIIGHDGSVWAQSSSFPQFKAEEISAIMKDLDEPGSLAPTGLHLGGTKYMVIQGEPGSVVRGKKGAGGITVKKTEKAVIIGIYDEPLTPGQCNMVVERLGDYLIEQAL 131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 216838 218293 - CcPI632755_09g000250.1 Cco09g0025 186482
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0025 131 PRINTS Profilin signature 21 30 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Profilin signature 100 113 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Profilin signature 40 60 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Profilin signature 3 12 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Profilin signature 64 78 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Profilin signature 113 130 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 FunFam Profilin 1 131 - -
Cco09g0025 131 Pfam Profilin 1 129 IPR048278 GO:0003779(InterPro)
Cco09g0025 131 SMART prof_2 1 131 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 SUPERFAMILY Profilin (actin-binding protein) 2 129 IPR036140 -
Cco09g0025 131 CDD PROF 2 129 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 Gene3D Dynein light chain 2a, cytoplasmic 1 130 - -
Cco09g0025 131 PANTHER PROFILIN 1 129 IPR005455 GO:0003779(InterPro)|GO:0003785(PANTHER)|GO:0005938(PANTHER)|GO:0042989(PANTHER)
Cco09g0025 131 PRINTS Plant profilin signature 104 117 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 27 40 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 52 66 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 1 14 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 84 99 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 117 130 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 PRINTS Plant profilin signature 71 80 IPR005455 GO:0003779(InterPro)
Cco09g0025 131 ProSitePatterns Profilin signature. 1 8 IPR027310 GO:0003779(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0025 Cco-Chr9:216838 Cco11g0226 Cco-Chr11:2202593 8.90E-62 dispersed
Cco07g1416 Cco-Chr7:28277382 Cco09g0025 Cco-Chr9:216838 2.30E-57 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0025 K05759 - cit:102614190 243.817