Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0033 ATGGATGTTTCAACATATTTGCTCTCTGCTTTTCTGAGTGGCCTAGCTCTTCTCAATCTTGTTCAAGCTCAAGGTCAATTAGGCTTCATAAGCTTAGATTGTGGATTGCCACCAAACACAAACTACATTGAACCAACAACAACACTTCAATTTACTTCTGATGCTGCTTATATAAACAGTGGTGAAAGCAAAAGCTTATCCTCTAATTATAACGAATATCTACAACGACAATATCTTCATGTTAGAAGCTTTACCCAAGGACGTAGGAATTGCTACAATCTAAGTGTAAAAAAGGATACAAAATATTTGATGCGAGCAAGTTTTTTCTATGGAAATTACGACGGGCTCAGCCAACTGCCGAAATTCGATCTTTATTTTGGAGATAGCTTATGGAAGACAGTGAATTTTACTGATGAAAACACATATACCACAATAGATTCCATACATGTAACCTCAGACAATCAAGTACAAATTTGTCTCGTCAACACAAACTCTGGAACTCCATTCATCTCTTCATTGGAATTCAGACCTTTGCCAAATGAGACTTATAAGTTCTTGACAAGATCGTTGTTGCTTTACTATCGATTAGATATGGGTACAACAACGAACGAAACATACAGGTTTCCTGGTGATATATATGATCGATTTTGGACGCCTTTCAATTGGTACGAGTGGACAAGCATAAGTACCACACTTAAGATAGATTCAGCTGATAATAATTACTACCAGCCAGGATCTGCTGTCATGGGAACTGCAGCTATTAGAATAGATACAAAAAAGCCTATGGAAATTTGGTGGGAGCCTGAAGATGAAAACACCCAGTATTATGTATACATGCACTTTGCTGAAGTTGAAAATCTCCAAGCCAATCAATCCAGAGGATTCAACGTCACTTATAATGGGAGTTTTTGGTATGGTCCTCTCATTCCCAACTACTTGTCAACAATAACGCTCTACAATCGAGGGCCATTACCAACACCAAATAAAAAGCATCTATTCTCATTTATACAAATTGAAAATTCAACACGCCCTCCAATCATAAATGCTATGGAAATTTATTCTGTAATAGATCTATCAGAGCTAACGTCAGATCAAGGAGATGTGGATGCAATAACAAGCATCAAGTCAACTTACGGAATAGTCAGAGATTGGGAAGGAGATCCATGTGTTCCAAGAGCATACCCTTGGGAGGGTATAGATTGTACCAAAACAAATGGAACTGCTCCTAGAATCGTGTCTTTGAATTTGTCATCAAGTGGATTGACAGGAGAGATTTCTCAAAGTATAGAGAATCTACAAATGATACAAATATTGGACTTGTCAAACAATGGCTTGACGGGAACTATCCCTGATTTTCTGTCTAACTTGTCAAACCTTGAAGTCTTAAAGTTAGACAACAACAAGCTTTCAGGCTCTATTCCATCTGAACTCGTTAAGAGACTCAATAATGGTTCATTAATGTTAAGTGTTCAAGGGAATCCAAATCTAGATTGCATATCAAATTCGTGCAAGAGTAAGAAGACTAGTGTTGTTATTCCAATTGTAGCATCAATTGGCGGAGTGGTAGTCATCATTGTAGTTTCAATCATCATCCTTTGGATTGTTAAATCAAGGAAGAAACGAAAAAATGAAACCGTTGTTCCAAAGGTGGATCCCTCAGGAAGCAATGACCAAATAAGTGATCAGTTGTTGGAGACAAGGAGGCGGCAGTTCACATATTCAGAAGTCTTGAGGATGACCAACAATTTCCAGAGAATCCTAGGAAAAGGAGGTTTCGGGATGGTTTATTATGGCACCATAAATGACACTCAAGTGGCTGTGAAGATGCTATCTCAAGCTTCAGGTCAAGGTTATCAACAGTTTCAAGCAGAGGTTACACTTCTTTTGAGAGTTCACCACAAAAACTTGACAAGTCTTGTGGGGTATTTGAATGAAGGAGACCGCCTTGGGCTCATTTATGAGTTCATGGCCAAAGGAAACTTAGCAGAGCATCTTTCAGAAAGGAGTTCCTATGTCTTAAGTTGGCAAGATAGGCTCCGGATAGCCATGGATGCAGCACAAGGATTGGAGTACCTACACGATGGTTGCAAGCCACCCATAATCCATAGAGATGTGAAAACAACAAACATCTTATTGACAGAGAATTTTCAAGCCAAACTTGCAGATTTTGGTTTATCCAAAAGCTTCCCAGTAGATGGCAACAAAACTAACAACTACATGTCCACCATTGTTGCTGGAACCCCTGGTTACCTTGATCCAGACTACTACTTATCGAACAGGCTGACGGAGAAAAGCGATGTGTACAGCTTTGGAGTGGTTCTGTTGGAGATAATCAGCTGCAGACCTGTGATATCAAGAAGCGAAGAAAATGGTCATATCAGTAAATGGGTAAACTCGATGGTGGCTCAAGGGGACATAAATGGAATAGTTGATGAAAGATTGAGAGGAAAATATGATGGTAACTCAGTTTGGAAGGCAGTGGAGGTGGCGTTGAGTTGTGTATCTGGGAACTCTGGAAGAAGACCGACGATGAACCACGTGGTGGCGGAACTGAAGAGTTGTCTGGCCATGGAATTGGAACGGACGCCGGAGAGTCAAGGTTTCGATTCGACGAATTCCGTTAACATGATGTCCATTGTTATGGATTACAGTGAATCCGCTCCAATGGCGAGGTGA 2676 40.02 MDVSTYLLSAFLSGLALLNLVQAQGQLGFISLDCGLPPNTNYIEPTTTLQFTSDAAYINSGESKSLSSNYNEYLQRQYLHVRSFTQGRRNCYNLSVKKDTKYLMRASFFYGNYDGLSQLPKFDLYFGDSLWKTVNFTDENTYTTIDSIHVTSDNQVQICLVNTNSGTPFISSLEFRPLPNETYKFLTRSLLLYYRLDMGTTTNETYRFPGDIYDRFWTPFNWYEWTSISTTLKIDSADNNYYQPGSAVMGTAAIRIDTKKPMEIWWEPEDENTQYYVYMHFAEVENLQANQSRGFNVTYNGSFWYGPLIPNYLSTITLYNRGPLPTPNKKHLFSFIQIENSTRPPIINAMEIYSVIDLSELTSDQGDVDAITSIKSTYGIVRDWEGDPCVPRAYPWEGIDCTKTNGTAPRIVSLNLSSSGLTGEISQSIENLQMIQILDLSNNGLTGTIPDFLSNLSNLEVLKLDNNKLSGSIPSELVKRLNNGSLMLSVQGNPNLDCISNSCKSKKTSVVIPIVASIGGVVVIIVVSIIILWIVKSRKKRKNETVVPKVDPSGSNDQISDQLLETRRRQFTYSEVLRMTNNFQRILGKGGFGMVYYGTINDTQVAVKMLSQASGQGYQQFQAEVTLLLRVHHKNLTSLVGYLNEGDRLGLIYEFMAKGNLAEHLSERSSYVLSWQDRLRIAMDAAQGLEYLHDGCKPPIIHRDVKTTNILLTENFQAKLADFGLSKSFPVDGNKTNNYMSTIVAGTPGYLDPDYYLSNRLTEKSDVYSFGVVLLEIISCRPVISRSEENGHISKWVNSMVAQGDINGIVDERLRGKYDGNSVWKAVEVALSCVSGNSGRRPTMNHVVAELKSCLAMELERTPESQGFDSTNSVNMMSIVMDYSESAPMAR 891
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 283009 287270 + CcPI632755_09g000330.1 Cco09g0033 186490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0033 891 SUPERFAMILY L domain-like 394 482 - -
Cco09g0033 891 Gene3D Phosphorylase Kinase; domain 1 563 655 - -
Cco09g0033 891 FunFam Leucine-rich repeat receptor-like kinase 367 499 - -
Cco09g0033 891 ProSitePatterns Serine/Threonine protein kinases active-site signature. 700 712 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0033 891 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 656 863 - -
Cco09g0033 891 Gene3D Ribonuclease Inhibitor 368 496 IPR032675 -
Cco09g0033 891 SUPERFAMILY Protein kinase-like (PK-like) 557 851 IPR011009 -
Cco09g0033 891 CDD STKc_IRAK 587 852 - -
Cco09g0033 891 Pfam Leucine Rich Repeat 435 456 IPR001611 GO:0005515(InterPro)
Cco09g0033 891 Pfam Leucine Rich Repeat 458 477 IPR001611 GO:0005515(InterPro)
Cco09g0033 891 PANTHER OS07G0107800 PROTEIN-RELATED 21 859 - -
Cco09g0033 891 ProSiteProfiles Protein kinase domain profile. 581 855 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0033 891 Pfam Protein tyrosine and serine/threonine kinase 583 851 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0033 891 Gene3D Transferase(Phosphotransferase) domain 1 656 874 - -
Cco09g0033 891 FunFam Leucine-rich repeat receptor-like protein kinase 558 655 - -
Cco09g0033 891 ProSitePatterns Protein kinases ATP-binding region signature. 587 608 IPR017441 GO:0005524(InterPro)
Cco09g0033 891 SMART serkin_6 581 825 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0033 891 Pfam Malectin-like domain 32 355 IPR024788 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1425 Cco-Chr7:28348019 Cco09g0033 Cco-Chr9:283009 3.20E-190 dispersed
Cco09g0033 Cco-Chr9:283009 Cco09g0035 Cco-Chr9:315591 1.20E-263 dispersed
Cco09g0033 Cco-Chr9:283009 Cco09g0034 Cco-Chr9:290746 4.70E-247 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87068 PF12819 Malectin_like 1.60E-109 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0033 - - - 0.0