Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0034 ATGACAAATAATTTTGAGCGAATCCTGGGCGAAGGAGGTTTTAGGATGGTTTACTATGGCCTCACCAACAACGTTCAAGTGGCTGTAAAGTTACTTTCTCAAGCATCAAGGCAAGGCTATCAACAGTTCCAAGCAGAGGTTACCCATCTTATGAGAGTTCACCACAGAAACTTGACCAGCCTCGTTGGATATTTGAATGAAGGAGATCACCTTGGCCTAATTTACGAGTACATGGCCAATGGAGATTTGGCCAAACACCTTTCAGCAGAGAGGAGTGTACATATCCTAAGCTGGGAAAACAGACTTCGAATAGCAATGGATGCAGCTCAAGGATTGGAGTACTTGCATTATGGTTGTAAGCCACCCATAGTTCACAGAGATGTGAAAACAACAAACATCTTATTGACAGATAATTTCCAAGGCAAACTTGCAGATTTTGGTCTTTCCAAAAGCTTCCCCAGAGATGGCAACACCCACATGTCCACGGTTGTTGCTGGCACTCCTGGTTACCTTGATCCAGAGTACTACGTATCAAACAGGCTAACAGAGAAAAGCGATGTATACAGCTTTGGGATAGCTCTATTGGAGATAATCAGTTGCAAACCAGTAATATCAAGAACCGGAGATACACCACATATAGCTAAATGGATTACCTCTTTGCTGGCGCGAGGAGATATCCAGAGTATAGTTGATCCAAGATTAGAAGGGCAATATGAAACAAACTCTGTTTGGAAGACGGTGGAAGTGGCAATGGCTTGTGTAGCGGCAAATTCCAGTAGAAGGCCGACGATGAGCGACATTGTGGCGGAACTTAAAGATTGTTTAGCTACGGAATTGAGCCGAAAGCTTGAGAATCGTTCGCTTGATTCGACAAATTCCATTGAAATGAGGTCCATCGCTGTAGGATTTAATGCTTCCGATTCAAATCCCATGGCGAGTAATGGTTCTCCAGGCTTTGTTAGTCTAGATTGTGGTCTACAAGCAAATTCATCAGGCTACATCGATCCAAAGACAAATATTAAGTATATATCAGATGCAAGCTTTATAAACACAGGGGAAAGTAGAAGCGTAGCACCTGAGTTCAAGAACTATGAACAATCACACTGGACTCTAAGAAGTTTTCCTCAAGAAATTAGAAACTGTTACAATAAAAGCGCCATTAAAGACACCACGTATTTGATTCGAGCAAGCTTCTTATACGGAAATTATGATGGGTTCAATAAAACTCCACGGTTTGATCTGTATTTGGGCAATACTCGATGGACAACAGTGGATGATAGCTACTACTACACAGAAATGGTGCACACAACTTCAATAGATAAATTGCCAATCTGTCTTATCAACATTGGCTATGGAATACCATTCATCTCAACATTAGAGTTTAGAGAGCTTCCTTATCTCATTTACTATGCTCTATCAGTTTCCTTGCGCCTTTACCATCGGTACGATATGGGGTCAATAACAAATGAGCAATACAGGTTTCCCGATGATACTTATGATCGAGTGTGGGAAACATATGAAGATGGTAACTATGCACAACTAAGTACCTCGGATCCTGTAGTTACTGCTAACTCTGAGTATACACCGGTGGTAGTCATGAAAACTGCTGCAACTCCAAAGAATGGGACCAAGTACCTTAATTTCTCATGGGACTCCAGAAACGAAAGTGATAGATTTTATGCATATTCCTACTTTGCTGAACTTGAAAAGCTTCAAAGAAACCAATTTAGAGGATTTAATATCACTCATAATGGAAATTATAGGGATGGACCTATTATTCCTAAATATTTAAGCACAACATCATCTTTTTTAATCCTATCATCTCTATCAGGATCAAGACATGAATTGTCATTCGTCCCAATACAAAATTCAACTCTTCCTCCTATCATCAATGCTTTAGAAATTTATATTGAGATGGAGATCTCAGAACTAGAATCATACAGTGGAGATGTGGATGCAATCAGTCATGTTCAGTCAACTTATGGAATAATAAAAAATTGGGAAGGAGACCCATGTATGCCAAGTGGATATCCATGGAGTGGTTTGAATTGCAGCTCTGATCCAGTCCCTAGAATCACATCACTGGATTTGTCAAACAATTACTTGACAGGAGAAGTACCTAGATTTCTGTCCCAGTTGGAACACCTCAAAATCCTAAACTTAGAGAATAACAATCTCACAGGCTCTCTTCCACCAGAGCTTATCAAAAAACAGAAGAACCGTTCACTTACATTAAGAATACAAGGCAATCCAAATTTATGTACCTTAGAGCCATGCACAAAGATGACACCTGAGAACAAGAAAAGCAACAGCATAATCATTCCAGCAGTAGCATCAGTGGGTGGATTGCTTGCATTCCTCATAATTGCAGCAATTATTTATTGGATTGCTAAATCAAATAAGAAACAACAAGGTGACGTTGCTTTGATAGTGGATCCTGCAAAGACTTACACCCATTTAGGCAGTTCCTTGGAGACAAGGAGACAACAGTTTACTTATGCAGAAGTTGTGAGGATGACCAACAATTTTGAGAGGGTTCTTGGTAAGGGAGGTTTTGGGATGGTTTACTATGGAGTTCTAGATGACACTCAAGTGGCTGTGAAGATGATTTCTCCATCAGCTGTACAAGGCTATCATCAGTTTCAAGCAGAGGTTACAATTCTTATGAGAGTTCACCACAGAAACTTAACAAGCCTTGTAGGGTGTATGAATGATGGAGGTCACCTTGGCCTCATTTATGAGTACATGGCCAGAGGAAATCTGGCCGAGCATCTTTCTGAGAAAAGCTCAAGTATCTTAAGCTGGGAAAACAGACTTCGGATTGCAATAGATGCAGCTCAAGGGCTGGAGTATCTGCATCATGGCTGTAAGCCACCAATAGTCCACAGGGATGTGAAAACAACAAACATCTTATTGACAGAAAAATTCAACGCCAAACTTTCTGATTTTGGTCTTTCCAAGACTTATCCAACAGATGACAAGTCCTACATGAGCACTGTTATTGTTGGCACTCCCGGTTACCTTGATCCAGAGTACAAAACATCAAACAGGTTGAGTTCGAAAAGTGATGTGTACAGCTTCGGCCTTACACTGTTAGAGATAGTGTGTTGCAAACCAGTGATATCGAAATCTCAAGGCCATGATTCAATTCATATAATTAAATGGGTTGGCTCCATGGTTGCTCAAGGTGATTTTAGAAACATAGCAGACCAAAGATTAAAAGGAAAATATAACATAACCTCCGTCCGAAAAGCGGTGGAAGTAGCAATGGCTTGTGTGTCAGTGAATTCTGAGAGAAGGCCAACAATGAATCAAGTGGTGGCAGAACTGAAAAGTTGCTTAGCTATAGAACTGAGTCGAACACCAGAGAATCAAGATCCTTATTCAACAGAATCCACGGAAATGACATCAATCTACATGGTTTTGCCTCCTCGAACGGGTCCCATGGCGAGGTGA 3456 40.74 MTNNFERILGEGGFRMVYYGLTNNVQVAVKLLSQASRQGYQQFQAEVTHLMRVHHRNLTSLVGYLNEGDHLGLIYEYMANGDLAKHLSAERSVHILSWENRLRIAMDAAQGLEYLHYGCKPPIVHRDVKTTNILLTDNFQGKLADFGLSKSFPRDGNTHMSTVVAGTPGYLDPEYYVSNRLTEKSDVYSFGIALLEIISCKPVISRTGDTPHIAKWITSLLARGDIQSIVDPRLEGQYETNSVWKTVEVAMACVAANSSRRPTMSDIVAELKDCLATELSRKLENRSLDSTNSIEMRSIAVGFNASDSNPMASNGSPGFVSLDCGLQANSSGYIDPKTNIKYISDASFINTGESRSVAPEFKNYEQSHWTLRSFPQEIRNCYNKSAIKDTTYLIRASFLYGNYDGFNKTPRFDLYLGNTRWTTVDDSYYYTEMVHTTSIDKLPICLINIGYGIPFISTLEFRELPYLIYYALSVSLRLYHRYDMGSITNEQYRFPDDTYDRVWETYEDGNYAQLSTSDPVVTANSEYTPVVVMKTAATPKNGTKYLNFSWDSRNESDRFYAYSYFAELEKLQRNQFRGFNITHNGNYRDGPIIPKYLSTTSSFLILSSLSGSRHELSFVPIQNSTLPPIINALEIYIEMEISELESYSGDVDAISHVQSTYGIIKNWEGDPCMPSGYPWSGLNCSSDPVPRITSLDLSNNYLTGEVPRFLSQLEHLKILNLENNNLTGSLPPELIKKQKNRSLTLRIQGNPNLCTLEPCTKMTPENKKSNSIIIPAVASVGGLLAFLIIAAIIYWIAKSNKKQQGDVALIVDPAKTYTHLGSSLETRRQQFTYAEVVRMTNNFERVLGKGGFGMVYYGVLDDTQVAVKMISPSAVQGYHQFQAEVTILMRVHHRNLTSLVGCMNDGGHLGLIYEYMARGNLAEHLSEKSSSILSWENRLRIAIDAAQGLEYLHHGCKPPIVHRDVKTTNILLTEKFNAKLSDFGLSKTYPTDDKSYMSTVIVGTPGYLDPEYKTSNRLSSKSDVYSFGLTLLEIVCCKPVISKSQGHDSIHIIKWVGSMVAQGDFRNIADQRLKGKYNITSVRKAVEVAMACVSVNSERRPTMNQVVAELKSCLAIELSRTPENQDPYSTESTEMTSIYMVLPPRTGPMAR 1151
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 290746 313552 + CcPI632755_09g000340.1 Cco09g0034 186491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0034 1151 Gene3D Transferase(Phosphotransferase) domain 1 916 1134 - -
Cco09g0034 1151 Gene3D Transferase(Phosphotransferase) domain 1 78 296 - -
Cco09g0034 1151 SUPERFAMILY Protein kinase-like (PK-like) 3 271 IPR011009 -
Cco09g0034 1151 Pfam Leucine Rich Repeat 715 734 IPR001611 GO:0005515(InterPro)
Cco09g0034 1151 Pfam Leucine Rich Repeat 692 713 IPR001611 GO:0005515(InterPro)
Cco09g0034 1151 CDD STKc_IRAK 847 1111 - -
Cco09g0034 1151 SMART serkin_6 3 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 SMART serkin_6 841 1114 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 ProSiteProfiles Protein kinase domain profile. 3 275 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 ProSiteProfiles Protein kinase domain profile. 841 1114 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 123 135 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 SUPERFAMILY L domain-like 674 739 - -
Cco09g0034 1151 ProSitePatterns Serine/Threonine protein kinases active-site signature. 960 972 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 916 1122 - -
Cco09g0034 1151 FunFam Leucine-rich repeat receptor-like protein kinase 819 915 - -
Cco09g0034 1151 Pfam Protein tyrosine and serine/threonine kinase 843 1110 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 Pfam Protein tyrosine and serine/threonine kinase 5 271 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0034 1151 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 78 284 - -
Cco09g0034 1151 Pfam Malectin-like domain 322 636 IPR024788 -
Cco09g0034 1151 PANTHER OS07G0107800 PROTEIN-RELATED 317 1119 - -
Cco09g0034 1151 SUPERFAMILY Protein kinase-like (PK-like) 825 1110 IPR011009 -
Cco09g0034 1151 Gene3D Ribonuclease Inhibitor 652 763 IPR032675 -
Cco09g0034 1151 Gene3D Phosphorylase Kinase; domain 1 828 915 - -
Cco09g0034 1151 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Cco09g0034 1151 ProSitePatterns Protein kinases ATP-binding region signature. 847 868 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0034 Cco-Chr9:290746 Cco09g0036 Cco-Chr9:326894 1.50E-197 dispersed
Cco09g0033 Cco-Chr9:283009 Cco09g0034 Cco-Chr9:290746 4.70E-247 tandem
Cco09g0034 Cco-Chr9:290746 Cco09g0035 Cco-Chr9:315591 0.00E+00 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87069 PF12819 Malectin_like 2.70E-94 CL0202 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0034 - - - 0.0