Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0037 ATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATACTTCCAACTTCTTCAACTCACTTCAAGACTGCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTGTCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACTGGCTTCAACGGCGACAAATCAGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTATACCAATTTATGGAACTTCGGAGGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTCGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA 1176 40.99 MDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNTSNFFNSLQDCPIKEAATSSALVSKTGEALVVSPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGGNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN 391
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 340734 341909 - CcPI632755_09g000370.1 Cco09g0037 186494
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0037 391 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 115 377 IPR045843 GO:0003700(InterPro)|GO:0006355(InterPro)
Cco09g0037 391 Pfam Helix-loop-helix DNA-binding domain 291 332 IPR011598 GO:0046983(InterPro)
Cco09g0037 391 Coils Coil 321 348 - -
Cco09g0037 391 MobiDBLite consensus disorder prediction 154 173 - -
Cco09g0037 391 Gene3D - 287 350 IPR036638 GO:0046983(InterPro)
Cco09g0037 391 SMART finulus 288 337 IPR011598 GO:0046983(InterPro)
Cco09g0037 391 MobiDBLite consensus disorder prediction 220 241 - -
Cco09g0037 391 FunFam BHLH transcription factor 285 349 - -
Cco09g0037 391 MobiDBLite consensus disorder prediction 368 391 - -
Cco09g0037 391 MobiDBLite consensus disorder prediction 199 243 - -
Cco09g0037 391 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 287 347 IPR036638 GO:0046983(InterPro)
Cco09g0037 391 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 282 331 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0167 Cco-Chr2:1664018 Cco09g0037 Cco-Chr9:340734 5.00E-09 dispersed
Cco04g0870 Cco-Chr4:24273407 Cco09g0037 Cco-Chr9:340734 1.20E-19 dispersed
Cco05g2262 Cco-Chr5:31350406 Cco09g0037 Cco-Chr9:340734 2.40E-30 dispersed
Cco08g1786 Cco-Chr8:28991233 Cco09g0037 Cco-Chr9:340734 3.80E-29 dispersed
Cco09g0037 Cco-Chr9:340734 Cco10g1016 Cco-Chr10:21824618 1.00E-12 dispersed
Cco07g1428 Cco-Chr7:28369481 Cco09g0037 Cco-Chr9:340734 2.70E-35 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59874 PF00010 HLH 7.20E-06 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0037 - - - 0.0