Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0037 | ATGGATCATTTGAATTGGAATGGTTATGGATCAAGAGTTGCGACGAAAACGACGACGTCGGCATCGTTTTGGAGCAATTACCAACAAGGAGTTGAAGAAAGGTTCATGATATCCAACTCAAATACTTCCAACTTCTTCAACTCACTTCAAGACTGCCCAATTAAAGAAGCTGCAACTTCTTCAGCTCTGGTTTCAAAAACAGGGGAAGCTTTGGTTGTCAGTCCTCCATTGACAAGCTTTACAACATCTAGCAACATGGATGTTGTTGGCCTTGAATCACAGCTCCTCACTGGCTTCAACGGCGACAAATCAGCGACGGTAACGACGTGCTCTCTCGAGTCGTTGGACTGTTTGCTTTCAGCTACAAACAGCAACACAGACACATCAGTTGAAGATGATGGATCAGTTTCAATGATGTTAACAGATTATACCAATTTATGGAACTTCGGAGGAAATGCAGCAGCATCTTCAAGAGAATCTGAAAAGAATGGTTCAAATTCTACAAAGAGAAGCCATGACCAAACTCATTTCAAAGCTGCAGATTACTCTATTTTCTCAAATAACATCATAAATCTATCTGATTCCACTTCAGACAGTGGAGGATTTAGGATCATAACAGATCAGAATCCGCCAAAACAGAAGAAACCCAGATCAGAAAAGCCACCAAGTTCATCAAACATCAATTTTCAACAATCATGTTCATCAGGATCTTCTTGTATTGATCAAGAGCCTGATCCAGAGGCCATTGCACAAATGAAAGAGATGATCTACAGAGCAGCAGCTTTCAGGCCAGTGAATTTGGGGTTGGAAATGATAGAAAAGCCCAAAAGGAAGAATGTGAGAATTTCAACAGACCCACAAACTGTAGCAGCAAGGCAAAGGAGAGAGAGAATCAGTGAGAGAATTAGGGTTTTGCAAAGGCTTGTTCCTGGTGGAAGCAAAATGGATACAGCATCAATGCTTGATGAAGCTGCAAATTATCTCAAGTTCTTGAAGTCTCAGATCAAAGCTTTAGAGAATCTTGGGCAAAAGCTCGAGTCTTTGAATTGCCCTCCAACTAGCATAGCTTTCTCTTTCAACCCATCTTTTCCCATACAAACATCATCATCATCCTCCCATAATAATTTCACGCTCCAAAATCCCAACCACCTTATTAGCCAATATCCCCAAAACTAA | 1176 | 40.99 | MDHLNWNGYGSRVATKTTTSASFWSNYQQGVEERFMISNSNTSNFFNSLQDCPIKEAATSSALVSKTGEALVVSPPLTSFTTSSNMDVVGLESQLLTGFNGDKSATVTTCSLESLDCLLSATNSNTDTSVEDDGSVSMMLTDYTNLWNFGGNAAASSRESEKNGSNSTKRSHDQTHFKAADYSIFSNNIINLSDSTSDSGGFRIITDQNPPKQKKPRSEKPPSSSNINFQQSCSSGSSCIDQEPDPEAIAQMKEMIYRAAAFRPVNLGLEMIEKPKRKNVRISTDPQTVAARQRRERISERIRVLQRLVPGGSKMDTASMLDEAANYLKFLKSQIKALENLGQKLESLNCPPTSIAFSFNPSFPIQTSSSSSHNNFTLQNPNHLISQYPQN | 391 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 340734 | 341909 | - | CcPI632755_09g000370.1 | Cco09g0037 | 186494 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0037 | 391 | PANTHER | TRANSCRIPTION FACTOR HEC3-RELATED | 115 | 377 | IPR045843 | GO:0003700(InterPro)|GO:0006355(InterPro) | |
Cco09g0037 | 391 | Pfam | Helix-loop-helix DNA-binding domain | 291 | 332 | IPR011598 | GO:0046983(InterPro) | |
Cco09g0037 | 391 | Coils | Coil | 321 | 348 | - | - | |
Cco09g0037 | 391 | MobiDBLite | consensus disorder prediction | 154 | 173 | - | - | |
Cco09g0037 | 391 | Gene3D | - | 287 | 350 | IPR036638 | GO:0046983(InterPro) | |
Cco09g0037 | 391 | SMART | finulus | 288 | 337 | IPR011598 | GO:0046983(InterPro) | |
Cco09g0037 | 391 | MobiDBLite | consensus disorder prediction | 220 | 241 | - | - | |
Cco09g0037 | 391 | FunFam | BHLH transcription factor | 285 | 349 | - | - | |
Cco09g0037 | 391 | MobiDBLite | consensus disorder prediction | 368 | 391 | - | - | |
Cco09g0037 | 391 | MobiDBLite | consensus disorder prediction | 199 | 243 | - | - | |
Cco09g0037 | 391 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 287 | 347 | IPR036638 | GO:0046983(InterPro) | |
Cco09g0037 | 391 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 282 | 331 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g0167 | Cco-Chr2:1664018 | Cco09g0037 | Cco-Chr9:340734 | 5.00E-09 | dispersed | |
Cco04g0870 | Cco-Chr4:24273407 | Cco09g0037 | Cco-Chr9:340734 | 1.20E-19 | dispersed | |
Cco05g2262 | Cco-Chr5:31350406 | Cco09g0037 | Cco-Chr9:340734 | 2.40E-30 | dispersed | |
Cco08g1786 | Cco-Chr8:28991233 | Cco09g0037 | Cco-Chr9:340734 | 3.80E-29 | dispersed | |
Cco09g0037 | Cco-Chr9:340734 | Cco10g1016 | Cco-Chr10:21824618 | 1.00E-12 | dispersed | |
Cco07g1428 | Cco-Chr7:28369481 | Cco09g0037 | Cco-Chr9:340734 | 2.70E-35 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59874 | PF00010 | HLH | 7.20E-06 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0037 | - | - | - | 0.0 |