Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0061 ATGAAAACTGCAGAAATTTCCTTTGAAATTGGGACTCTGATGGGGTTTCGATTACTGTTTCTGCTGTTCCAAATTTATTTTGCTGTTAGCTTTTTCTCTGTCTGTGAAGCTGCAGTTATTCTCCCAGGCAGGCCGAGTGGATCGCATTCTGCACTCCCAGACCATGCTGTCACTCCAACATCTCATGGCTTTGGCAGGAAACACCATGGCAATTTGGATAATGCAGCCCCTAGCAAACCATTTAAAAGTTCATCTCCTCAGATCCATTCTCATTATAAAGCCATTCAATCAGATGATTCAAGTAGAGCTCCTAGCATTGCACTTCCGCCCACCGCGCCTGCTAAGAAATGGGGGCACGAACATACACTCTCACCATTGATCTCTTTTCATAAATTTCGCCATTCAAGAAGGAAGTTCAGGAACAATGCTCCACAGCCTACTTATCATGCATCGCCCCCGACTAGCAGCCAGAAAGGCCCTGCTGCTGTCTCTCCAATTCAGTCACCGTTACCATCTGTAGTGAGAGGGAGGTCGCCCGGACCTGCACCATCACCAACAATTCAACCCAACCACTATTATATGCCCATTCCTGCACCTACAACTTCTCCTATGGGTTCTTACAAGAAGAAGAAGAGTATGCCACCATCACAAGTTATGATTCTACCACCTCCACCTCCTAATGGGGATTGTACAATAGCATGTACAGAGCCATTGACATATACAGCTCCCGGGACGCAATGTGGCTGCGTGTGGCCAATTCAAGTCAAAATCATTCTTGATGTTGCAGTATACACGTTTTTTCCTCTGGTTTCAGAACTTGCAGAGGAAATTGCTGACAGTATCAGTCTGAACCAAAGCCAAGTTCGAATTATGGGAGCCGATGCTGCTAGTCAGCAGTTAGAAAAAACGACTGTCCTCATCAACTTGGTTCCGAGAGGATCAAAATTCAATCATAACGCAGCCCTTTTTATATATCAGAAATTTTGGCGGAGAAAGATATTCATCAACCCTTCTTTGTTTGGAAGATATCAAGTACTAAATGTCAAATATCCAGGTCTTCCGCCATCTCCTCCATTGGCGCCTTCAGGTACGTCGTCTATTAATGATGGTTTGAACACTAGCAATAGTAATGCTGGAAATGCAATTAAACCGTTGGGAGTTGACGTGCCAAGACGAAAAAAAGAAGGGCTTGGCAGAAACATGATCGCGGTGATTACTATATCATCGTTCACTGCCCTTGTCATGTGTGTTGGGCTTGCTTGGCTTTGCCTGTTGAGATGCAGAGTGTCTACACATCACCCAGCACAAATTCCACAAAACTTGATAGCCTCACCTACAAAACCACCAGGCACTGCTGGATTGATAATGGTTGGAAGTGAACCTGGTTCTTCATCCATGCCTCTCGATGCCGATCCTATGACGTATATTGGAGCTGCAAAGAACTTCACCTTGAAAGATATGGAGAAAGCCACTGACAACTTCGATACTGCAAGAATATTAGGAGAAGGTGGCTTTGGAATTGTATACAGTGGCAGTTTAGACGATGGAAGAGAAGTGGCTGTGAAGGTTCTTAAACGACATAATCAACATGGTATTCGGGAATTCTTGGCAGAAGTCGAGATGCTGAGCCGTCTACACCATAGAAATCTAGTTAAGTTGATTGGTATCTGCACAGAAGATCAGATTCGCTGCCTGGTATATGAATTGGTTCCTAATGGAAGTGTTGAATCACACTTACATGGCATTGACAAGTTAACCAGTCCACTTGACTGGGATGCCCGCATGAAGATTGCCCTTGGTGCTGCTCGAGGCCTAGCCTATCTGCATGAAGACTCCAATCCTCGAGTCATTCATCGAGACTTCAAAGCTAGCAACATCTTGTTGGAATATGACTTTACACCTAAAGTTTCAGATTTTGGATTAGCTAGAACTGCACTAGAGGAAGGAAACAAGCACATCTCAACACATGTCATGGGAACTTTTGGTTATCTAGCTCCAGAATATGCAATGACCGGCCACCTTCTTGTAAAGAGCGATGTCTATAGCTATGGTGTTGTCCTTCTCGAGCTGCTTACAGGAAGAAAGCCAGTAGACTTGTCACTTCCACCCGGACAAGAAAATCTTGTTGCTTGGGCTCGTCCGCTTCTCACGAGCAAGGAAGGATTAGATGCAATAACAGACCCAGCTATCAAGTCTGACATCTCCATTGATAGCTTGGCCAGAGTAGCAGCGATTGCTTCAATGTGTGTACAGCCAGAAGTATCTCACAGACCATTTATGGGTGAGGTTGTTCAAGCCCTGAAACTCGTTTGCAATGAATTTGAAGAAACTAACGATCCAGTTTCACGAAGTTACAGCCGAGACGAACTTCTAAGTTACATAGATAGTAAATTTGGAGGAATTTCCGGTGAAATACTAAACGCTCCTGAGACCTCGCACACCTTTCCTTCAGGAAAAGAGAAGAATGTAGGATTATCAGCATCGGATTTGATCAGTGCATCTGCAAGATTTGAAGGACAGGAACTGGTTTCTTCTAGATGGCATTCATCAAACTCGGAACCATTAAGAACTGGAAGAAAAAAGCACTTATGGCAGAAGCTAAGAAGTTTCTCACGAGGCAGCTTCAGTGAACATGGCTTTTCTGCAAAGTTTTGGCCTGGATTTCGTTAG 2670 44.31 MKTAEISFEIGTLMGFRLLFLLFQIYFAVSFFSVCEAAVILPGRPSGSHSALPDHAVTPTSHGFGRKHHGNLDNAAPSKPFKSSSPQIHSHYKAIQSDDSSRAPSIALPPTAPAKKWGHEHTLSPLISFHKFRHSRRKFRNNAPQPTYHASPPTSSQKGPAAVSPIQSPLPSVVRGRSPGPAPSPTIQPNHYYMPIPAPTTSPMGSYKKKKSMPPSQVMILPPPPPNGDCTIACTEPLTYTAPGTQCGCVWPIQVKIILDVAVYTFFPLVSELAEEIADSISLNQSQVRIMGADAASQQLEKTTVLINLVPRGSKFNHNAALFIYQKFWRRKIFINPSLFGRYQVLNVKYPGLPPSPPLAPSGTSSINDGLNTSNSNAGNAIKPLGVDVPRRKKEGLGRNMIAVITISSFTALVMCVGLAWLCLLRCRVSTHHPAQIPQNLIASPTKPPGTAGLIMVGSEPGSSSMPLDADPMTYIGAAKNFTLKDMEKATDNFDTARILGEGGFGIVYSGSLDDGREVAVKVLKRHNQHGIREFLAEVEMLSRLHHRNLVKLIGICTEDQIRCLVYELVPNGSVESHLHGIDKLTSPLDWDARMKIALGAARGLAYLHEDSNPRVIHRDFKASNILLEYDFTPKVSDFGLARTALEEGNKHISTHVMGTFGYLAPEYAMTGHLLVKSDVYSYGVVLLELLTGRKPVDLSLPPGQENLVAWARPLLTSKEGLDAITDPAIKSDISIDSLARVAAIASMCVQPEVSHRPFMGEVVQALKLVCNEFEETNDPVSRSYSRDELLSYIDSKFGGISGEILNAPETSHTFPSGKEKNVGLSASDLISASARFEGQELVSSRWHSSNSEPLRTGRKKHLWQKLRSFSRGSFSEHGFSAKFWPGFR 889
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 532185 536494 - CcPI632755_09g000610.1 Cco09g0061 186518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0061 889 FunFam Receptor-like serine/threonine-protein kinase ALE2 570 787 - -
Cco09g0061 889 ProSitePatterns Protein kinases ATP-binding region signature. 500 522 IPR017441 GO:0005524(InterPro)
Cco09g0061 889 ProSitePatterns Serine/Threonine protein kinases active-site signature. 616 628 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0061 889 MobiDBLite consensus disorder prediction 362 381 - -
Cco09g0061 889 MobiDBLite consensus disorder prediction 141 163 - -
Cco09g0061 889 Pfam Protein tyrosine and serine/threonine kinase 497 767 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0061 889 CDD STKc_IRAK 500 768 - -
Cco09g0061 889 Gene3D Transferase(Phosphotransferase) domain 1 570 789 - -
Cco09g0061 889 MobiDBLite consensus disorder prediction 359 384 - -
Cco09g0061 889 MobiDBLite consensus disorder prediction 46 118 - -
Cco09g0061 889 ProSiteProfiles Protein kinase domain profile. 494 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0061 889 FunFam receptor-like serine/threonine-protein kinase ALE2 468 569 - -
Cco09g0061 889 Gene3D Phosphorylase Kinase; domain 1 465 569 - -
Cco09g0061 889 MobiDBLite consensus disorder prediction 77 104 - -
Cco09g0061 889 MobiDBLite consensus disorder prediction 176 192 - -
Cco09g0061 889 PANTHER OS01G0750732 PROTEIN 230 785 IPR050885 -
Cco09g0061 889 SUPERFAMILY Protein kinase-like (PK-like) 474 767 IPR011009 -
Cco09g0061 889 MobiDBLite consensus disorder prediction 141 215 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0149 Cco-Chr7:1521741 Cco09g0061 Cco-Chr9:532185 3.40E-169 dispersed
Cco09g0061 Cco-Chr9:532185 Cco10g1138 Cco-Chr10:23800740 3.40E-104 dispersed
Cco03g1609 Cco-Chr3:30760811 Cco09g0061 Cco-Chr9:532185 2.50E-205 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87072 PF07714 PK_Tyr_Ser-Thr 6.30E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0061 - - - 0.0