Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0063 ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCAACACCACCACCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCATAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCATCATCCTGATCTGGTTCATCAGAGCGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAACTTAAAGGTGCTGTAGACACTTTATTTACCTTCCCAGCTTGTGATACTTAG 864 45.72 MSPINHHQHFSKSTSAAVTTTTSSNTTTTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDHHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGAVDTLFTFPACDT 287
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 551810 553692 - CcPI632755_09g000630.1 Cco09g0063 186520
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0063 287 Pfam Lateral organ boundaries (LOB) domain 35 130 IPR004883 -
Cco09g0063 287 MobiDBLite consensus disorder prediction 1 28 - -
Cco09g0063 287 ProSiteProfiles LOB domain profile. 34 135 IPR004883 -
Cco09g0063 287 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 33 228 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1105 Cco-Chr2:15622562 Cco09g0063 Cco-Chr9:551810 2.60E-19 dispersed
Cco08g1882 Cco-Chr8:29865971 Cco09g0063 Cco-Chr9:551810 1.90E-25 dispersed
Cco09g0063 Cco-Chr9:551810 Cco09g2049 Cco-Chr9:34893718 1.00E-25 dispersed
Cco09g0063 Cco-Chr9:551810 Cco06g1928 Cco-Chr6:29543816 1.00E-22 transposed
Cco09g0063 Cco-Chr9:551810 Cco10g1378 Cco-Chr10:26834204 1.00E-22 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59875 PF03195 LOB 9.90E-36 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0063 - - - 0.0