Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0063 | ATGAGCCCCATCAATCACCACCAACACTTCTCCAAATCCACCTCCGCCGCCGTCACAACCACCACTTCCTCCAACACCACCACCACCACCACCACCACCCAAGCCTGCGCCGCCTGTAAGTACCAACGCCGTAAGTGCGCTCCCGATTGCATTCTCGCCCCTTATTTCCCTCACGATCGTCAACGTCAATTCTTAAACGCTCATAAACTCTTCGGCGTTAGCAATATCACTAAAATCATTAAGAATCTCGATCCGTTTGAGAAGGAAGAAGCAATGCGTACCATTATTTTTCAATCTGATGTTCGATCCGTCGATCCTGTTGGCGGTTGTTATCGGATTATTCGAGACCTTCAACGCCAAATTGAATATAGCAAGGCGGAGCTTGAGATCGTGCTTCATCAATTGGCTATTTGTAAACAGCAGGCCGCTGCTGCTGCGGCCGCTGCGGCTATTCTTGAGGCGGATCCGATGAGTGGATACGGCGGAATTGAGCATCAATTTGTGGAAGGGTATGAAGGGGAAGGGTTTGTAGTTGGGGAAAATGAGAATGGGGAAAGTTTGGAAGATCAGGACGTGGAGGTTTGGGGAATTCAAGATTCGTGTTCTTCATTACAATTGAAACAAGCCGGCTCTGTTCATGATTTTCACGATATCAAGATCGATACAAATAATAATCACCTTCAACAACAACTTAAATTTCAACACGATCATCATCCTGATCTGGTTCATCAGAGCGAAGAACCTATGCTGAAGATGGACAATGTGATATTGAAAGAAGATTCTGACCCAATACAACAGGCTCAAGATCAAGAACTTAAAGGTGCTGTAGACACTTTATTTACCTTCCCAGCTTGTGATACTTAG | 864 | 45.72 | MSPINHHQHFSKSTSAAVTTTTSSNTTTTTTTTQACAACKYQRRKCAPDCILAPYFPHDRQRQFLNAHKLFGVSNITKIIKNLDPFEKEEAMRTIIFQSDVRSVDPVGGCYRIIRDLQRQIEYSKAELEIVLHQLAICKQQAAAAAAAAAILEADPMSGYGGIEHQFVEGYEGEGFVVGENENGESLEDQDVEVWGIQDSCSSLQLKQAGSVHDFHDIKIDTNNNHLQQQLKFQHDHHPDLVHQSEEPMLKMDNVILKEDSDPIQQAQDQELKGAVDTLFTFPACDT | 287 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 551810 | 553692 | - | CcPI632755_09g000630.1 | Cco09g0063 | 186520 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0063 | 287 | Pfam | Lateral organ boundaries (LOB) domain | 35 | 130 | IPR004883 | - | |
Cco09g0063 | 287 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
Cco09g0063 | 287 | ProSiteProfiles | LOB domain profile. | 34 | 135 | IPR004883 | - | |
Cco09g0063 | 287 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 33 | 228 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1105 | Cco-Chr2:15622562 | Cco09g0063 | Cco-Chr9:551810 | 2.60E-19 | dispersed | |
Cco08g1882 | Cco-Chr8:29865971 | Cco09g0063 | Cco-Chr9:551810 | 1.90E-25 | dispersed | |
Cco09g0063 | Cco-Chr9:551810 | Cco09g2049 | Cco-Chr9:34893718 | 1.00E-25 | dispersed | |
Cco09g0063 | Cco-Chr9:551810 | Cco06g1928 | Cco-Chr6:29543816 | 1.00E-22 | transposed | |
Cco09g0063 | Cco-Chr9:551810 | Cco10g1378 | Cco-Chr10:26834204 | 1.00E-22 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59875 | PF03195 | LOB | 9.90E-36 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0063 | - | - | - | 0.0 |