Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0065 ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTTAACAATAACAATAATAATTTTGCTCTTAAACGAGATTTCAACAATAACAACAGCAACAACAACAACAATTTAAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCCCCATCAACACCACCACCGCTGCCACTTCCGGTGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCAGTCTCAAATCCAGAAGCCATGGCAGGGTTAG 1575 44.38 MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGGGAVSCSSSSCTDYGNKAASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPPINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLQSQIQKPWQG 524
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 563250 566068 - CcPI632755_09g000650.1 Cco09g0065 186522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0065 524 Gene3D Classic Zinc Finger 144 223 - -
Cco09g0065 524 Pfam Zinc finger, C2H2 type 89 111 IPR013087 -
Cco09g0065 524 Pfam BIRD-IDD transcription factor, fourth C2HC zinc finger 192 227 - -
Cco09g0065 524 MobiDBLite consensus disorder prediction 46 72 - -
Cco09g0065 524 MobiDBLite consensus disorder prediction 289 316 - -
Cco09g0065 524 Pfam BIRD-IDD transcription factor, second C2H2 zinc finger 127 161 - -
Cco09g0065 524 Pfam BIRD-IDD transcription factor, third C2HC zinc finger 165 189 - -
Cco09g0065 524 SMART c2h2final6 166 186 IPR013087 -
Cco09g0065 524 SMART c2h2final6 131 161 IPR013087 -
Cco09g0065 524 SMART c2h2final6 89 111 IPR013087 -
Cco09g0065 524 MobiDBLite consensus disorder prediction 50 64 - -
Cco09g0065 524 ProSiteProfiles Zinc finger C2H2 type domain profile. 89 111 IPR013087 -
Cco09g0065 524 SUPERFAMILY beta-beta-alpha zinc fingers 88 186 IPR036236 -
Cco09g0065 524 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 43 491 IPR031140 GO:0003700(PANTHER)|GO:0005634(PANTHER)
Cco09g0065 524 Gene3D Classic Zinc Finger 68 139 - -
Cco09g0065 524 FunFam protein indeterminate-domain 5, chloroplastic-like 144 223 - -
Cco09g0065 524 FunFam protein indeterminate-domain 12-like 68 137 - -
Cco09g0065 524 ProSitePatterns Zinc finger C2H2 type domain signature. 91 111 IPR013087 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco04g1089 Cco-Chr4:26345648 Cco09g0065 Cco-Chr9:563250 3.10E-87 dispersed
Cco04g1699 Cco-Chr4:32146844 Cco09g0065 Cco-Chr9:563250 9.70E-88 dispersed
Cco09g0065 Cco-Chr9:563250 Cco10g2030 Cco-Chr10:33714856 2.20E-87 dispersed
Cco05g2031 Cco-Chr5:29394611 Cco09g0065 Cco-Chr9:563250 9.30E-89 wgd
Cco07g1453 Cco-Chr7:28645814 Cco09g0065 Cco-Chr9:563250 5.30E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59876 PF00096 zf-C2H2 0.0053 CL0361 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0065 K25870 - csv:101220200 709.523