Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0065 | ATGATGATGAAAGGTAATTTTTTGTCTCAACAACAACAACAAATTGTAGTGATGGATGAAAATTTGTCCAATTTGACTTCTGCATCTGGTGAAGCTACTGCTAGTGTTTCTTCTGCCAATAAAACTGAATTCCCCAATCAATATTTTGCTCCACAAACCCAACCACCACCTCCTCCTAAGAAGAAGCGCAACCTCCCCGGAAATCCCGACCCAGATGCGGAAGTGATAGCGTTATCGCCGAAGACGTTGATGGCGACGAATAGATTCGTGTGCGAGATATGCAACAAAGGGTTTCAAAGAGATCAGAATCTTCAACTACATAGAAGAGGACACAATTTGCCATGGAAATTAAAGCAAAGATCAAACAAAGAAGTAATAAAGAAGAAGGTATATGTTTGTCCAGAAGTGAGTTGCGTACACCATGATCCATCAAGAGCACTTGGAGACCTAACAGGAATAAAGAAGCACTTCTGCAGAAAGCATGGTGAAAAGAAATGGAAATGTGATAAGTGCTCTAAGAAATATGCAGTTCAATCTGATTGGAAAGCTCACTCCAAGATCTGTGGCACTAAGGAGTACAGATGTGACTGTGGAACTCTCTTTTCAAGAAGAGATAGTTTCATTACACATAGAGCTTTCTGTGATGCATTAGCAGATGAAAGTGCAAGATCAGCCATGGCATTAAACCCTCTTCTCTCTTCTTACAACAACAATAATAATTCACAAGAATTCCTTAACAATAACAATAATAATTTTGCTCTTAAACGAGATTTCAACAATAACAACAGCAACAACAACAACAATTTAAGAGCGGAGATTCCGCCGTGGCTACAGCCATCAGATCTCCGAGCGGAGATCCTGATGGGAAGTGGGGAGGATGAGAATCCTCATAATAATCATAATCATGAAACCCTAAACCCTAACCCTAATCCGGGGTGCGGGGCCACAAGTGTTCCTCCTCCGGCGTACCAATCGTGTTCTGTTTCTTCTCCTCATATCTCAGCGACTGCACTGCTGCAGAAGGCAGCTCAGATGGGTGCGACCATGAGTAGTACCACTACCACGAGTGGCTCTATGCCAAGGCCCCACAAGCTTCTTCACGTGTCTACAGGTAATTTTGGGGAAATAGGATTATGGTCACGTGAAGTTGAAATGGGTAGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGCTGTGAGTTGTAGTAGTAGTAGTTGTACTGATTATGGGAATAAAGCTGCTTCTGCTTCTGCTTCTGCACCCACCACTTTTCTTCATGATATGATCAATTCCCTCTCTTCTCCTTCTGCTTCTCATCCTTTCTTCCATGATAATTCCTCTTTCAACGACCCCGCCACTTTCGCCGCTATGCATCATCACACCGCCGCTCCCGCACCCCCCATCAACACCACCACCGCTGCCACTTCCGGTGGTCGTAGCGACGGTTTAACCAGAGATTTCTTGGGACTTCGCCCTCTTTCTCATGGTGATATTCTAAGCCTTACTGGATTTGGAAGTTGCATTGTTCCTAATTCCTCCAATCTTCAGTCTCAAATCCAGAAGCCATGGCAGGGTTAG | 1575 | 44.38 | MMMKGNFLSQQQQQIVVMDENLSNLTSASGEATASVSSANKTEFPNQYFAPQTQPPPPPKKKRNLPGNPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSNKEVIKKKVYVCPEVSCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTKEYRCDCGTLFSRRDSFITHRAFCDALADESARSAMALNPLLSSYNNNNNSQEFLNNNNNNFALKRDFNNNNSNNNNNLRAEIPPWLQPSDLRAEILMGSGEDENPHNNHNHETLNPNPNPGCGATSVPPPAYQSCSVSSPHISATALLQKAAQMGATMSSTTTTSGSMPRPHKLLHVSTGNFGEIGLWSREVEMGRGGGGGGGGGAVSCSSSSCTDYGNKAASASASAPTTFLHDMINSLSSPSASHPFFHDNSSFNDPATFAAMHHHTAAPAPPINTTTAATSGGRSDGLTRDFLGLRPLSHGDILSLTGFGSCIVPNSSNLQSQIQKPWQG | 524 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 563250 | 566068 | - | CcPI632755_09g000650.1 | Cco09g0065 | 186522 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0065 | 524 | Gene3D | Classic Zinc Finger | 144 | 223 | - | - | |
Cco09g0065 | 524 | Pfam | Zinc finger, C2H2 type | 89 | 111 | IPR013087 | - | |
Cco09g0065 | 524 | Pfam | BIRD-IDD transcription factor, fourth C2HC zinc finger | 192 | 227 | - | - | |
Cco09g0065 | 524 | MobiDBLite | consensus disorder prediction | 46 | 72 | - | - | |
Cco09g0065 | 524 | MobiDBLite | consensus disorder prediction | 289 | 316 | - | - | |
Cco09g0065 | 524 | Pfam | BIRD-IDD transcription factor, second C2H2 zinc finger | 127 | 161 | - | - | |
Cco09g0065 | 524 | Pfam | BIRD-IDD transcription factor, third C2HC zinc finger | 165 | 189 | - | - | |
Cco09g0065 | 524 | SMART | c2h2final6 | 166 | 186 | IPR013087 | - | |
Cco09g0065 | 524 | SMART | c2h2final6 | 131 | 161 | IPR013087 | - | |
Cco09g0065 | 524 | SMART | c2h2final6 | 89 | 111 | IPR013087 | - | |
Cco09g0065 | 524 | MobiDBLite | consensus disorder prediction | 50 | 64 | - | - | |
Cco09g0065 | 524 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 89 | 111 | IPR013087 | - | |
Cco09g0065 | 524 | SUPERFAMILY | beta-beta-alpha zinc fingers | 88 | 186 | IPR036236 | - | |
Cco09g0065 | 524 | PANTHER | SERINE/THREONINE-PROTEIN KINASE RIO | 43 | 491 | IPR031140 | GO:0003700(PANTHER)|GO:0005634(PANTHER) | |
Cco09g0065 | 524 | Gene3D | Classic Zinc Finger | 68 | 139 | - | - | |
Cco09g0065 | 524 | FunFam | protein indeterminate-domain 5, chloroplastic-like | 144 | 223 | - | - | |
Cco09g0065 | 524 | FunFam | protein indeterminate-domain 12-like | 68 | 137 | - | - | |
Cco09g0065 | 524 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 91 | 111 | IPR013087 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco04g1089 | Cco-Chr4:26345648 | Cco09g0065 | Cco-Chr9:563250 | 3.10E-87 | dispersed | |
Cco04g1699 | Cco-Chr4:32146844 | Cco09g0065 | Cco-Chr9:563250 | 9.70E-88 | dispersed | |
Cco09g0065 | Cco-Chr9:563250 | Cco10g2030 | Cco-Chr10:33714856 | 2.20E-87 | dispersed | |
Cco05g2031 | Cco-Chr5:29394611 | Cco09g0065 | Cco-Chr9:563250 | 9.30E-89 | wgd | |
Cco07g1453 | Cco-Chr7:28645814 | Cco09g0065 | Cco-Chr9:563250 | 5.30E-36 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59876 | PF00096 | zf-C2H2 | 0.0053 | CL0361 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0065 | K25870 | - | csv:101220200 | 709.523 |