Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0073 | ATGGCTGACCATTCTTCCAATCGCGATACTGATTCAGGGTTTGATCATGGCTCACCTCAACCACGTCTTTACAATCCCTACAAGGATCTCCAGGTTCCTTATCGGAACTTCCAGCTTCCAACCTCCCCAGAGTTTCTTTTCGATGAAGAAGCTCGCCGCCAGCGTCGATCTTGGGGCGAGAATCTCACCTTCTACACTGGTTGCGGTTACCTCGCTGGTGCTGTCGGCGGAGCATCTACAGGACTCGTATCCGGCGTCAAATCTTTTGAATCAGGTGATACTATGAAACTCCGGATCAATCGGATCCTGAACTCGTCTGGTCATTCAGGGCGTCTTTGGGGGAATCGGCTCGGCGTGATTGGGTTGCTTTATGCTGGTTTGGAGAGCGGGATTGAGGCTGTGAGGGATACGGACGATGTGTGGAACTGTATTGCAGCAGGACTTGGCACTGGTGCGCTTTATCGTGCAGCAAGAGGGGTGAGATCGGCGGCGGTGGCCGGTGCTATTGGCGGTGTCGTGGTTGGCGTGGCGGTGACGGGTAAGCAGATGTTGAAGCGGATGATGGAACAATTCTGGGAACCTCGATCTACGACGGTTCTGGATTCTCAATGTCCTTTGATTGTTTTTAGCCACCGTGACCTACGCAGTCCAAGGGTTACACTACAAAAACCTAACAGCCTTCACAAAAATTTCCCTCTTTCGCTCGCTGCGCTTTGCCCAACACTCGCCTCCAACTCCACGGATCAGATCCGAAGAGTTTGGCAAACCCTAGCTTCCTTTCTTCAATCTCCATCTGTTTCATCTTCCTCTTTCTTCTCTAACATTCCGCAGGTCTGCTTCATTCCTTTCTCTTTCGATTTTGCTTCCTTGTCTACTTATTTCACTGCACGGATATGGTTGTATGTATCCATGGCAGGTTTAGCTCCAGAAGGATCCCAGTTTGATTCTCGACAATATGATGCTAAAATGAATGAGATTCTTTCGGCAGAAGGCCAGGAATTCTTTACCTCATATGATGAAGTATATGAAAGTTTTGATTCGATGGGGCTGCAAGAAAATCTCCTTAGAGGCATTTATGCCTATGGTTTTGAGAAACCATCCGCAATTCAGCAAAGAGGTATTGTTCCCTTCTGCAAAGGCCTTGATGTGATTCAGCAGGCTCAGTCTGGAACTGGGAAGACTGCAACCTTCTGCTCTGGGATACTTCAGCAACTTGATTATGGTCTAATCCAGTGTCAGGCATTAGTTCTGGCTCCGACTAGGGAGCTGGCTCAACAAATCGAGAAGGTTATGAGAGCTCTTGGAGATTATCTTGGTGTCAAGGTTCATGCTTGTGTAGGAGGGACAAGCGTCCGTGAGGATCAACGCATTCTTCAAGCTGGTGTTCACGTAGTAGTTGGAACACCTGGTCGTGTGTTTGACATGTTAAGGAGGCAGTCTCTTCGCCCAGATTGTATTAAGATGTTTGTATTGGATGAAGCTGATGAAATGCTTTCTCGAGGTTTCAAAGATCAGATCTATGACATTTTCCAGCTGTTGCCGTCAAAAATTCAAGTTGGGGTATTCTCCGCCACAATGCCACCAGAAGCTTTGGAGATCACGAGGAAATTCATGAACAAGCCTGTCAGAATCTTGGTAAAACGTGATGAGCTTACTTTGGAGGGTATCAAACAATTTTACGTAAATGTCGATAAGGAAGATTGGAAGCTCGAAACTCTGTGTGATCTCTACGAGACTCTGGCTATCACTCAAAGTGTTATTTTTGTTAACACACGTCGCAAGGTCGATTGGCTTACAGACAAGATGAGAAGCCGAGACCATACCGTATCAGCCACCCATGGTGACATGGACCAGAACACTCGAGATATAATCATGCGTGAATTTCGGTCTGGTTCGTCTCGTGTTCTTATCACAACTGACTTGTTAGCTCGTGGTATTGATGTTCAGCAAGTCTCTCTTGTCATAAATTATGATTTGCCAACCCAACCAGAAAATTACCTTCATCGAATTGGGCGAAGTGGGCGTTTTGGAAGAAAGGGTGTTGCCATCAATTTTGTTACAAATGATGATGACAGAATGCTTTTTGATATTCAGAAGTTCTATAATGTGATCATCGAGGAGCTGCCAGCCAATGTTGCAGATCTCCTATGA | 2151 | 46.44 | MADHSSNRDTDSGFDHGSPQPRLYNPYKDLQVPYRNFQLPTSPEFLFDEEARRQRRSWGENLTFYTGCGYLAGAVGGASTGLVSGVKSFESGDTMKLRINRILNSSGHSGRLWGNRLGVIGLLYAGLESGIEAVRDTDDVWNCIAAGLGTGALYRAARGVRSAAVAGAIGGVVVGVAVTGKQMLKRMMEQFWEPRSTTVLDSQCPLIVFSHRDLRSPRVTLQKPNSLHKNFPLSLAALCPTLASNSTDQIRRVWQTLASFLQSPSVSSSSFFSNIPQVCFIPFSFDFASLSTYFTARIWLYVSMAGLAPEGSQFDSRQYDAKMNEILSAEGQEFFTSYDEVYESFDSMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIQCQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILQAGVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFYVNVDKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTNDDDRMLFDIQKFYNVIIEELPANVADLL | 716 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 627065 | 633947 | - | CcPI632755_09g000730.1 | Cco09g0073 | 186530 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0073 | 716 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 412 | 697 | IPR027417 | - | |
| Cco09g0073 | 716 | FunFam | Eukaryotic initiation factor 4A-III | 551 | 716 | - | - | |
| Cco09g0073 | 716 | SMART | ultradead3 | 362 | 559 | IPR014001 | - | |
| Cco09g0073 | 716 | ProSiteProfiles | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 374 | 544 | IPR014001 | - | |
| Cco09g0073 | 716 | FunFam | Eukaryotic initiation factor 4A-II | 331 | 550 | - | - | |
| Cco09g0073 | 716 | Pfam | Tim17/Tim22/Tim23/Pmp24 family | 63 | 173 | - | - | |
| Cco09g0073 | 716 | ProSiteProfiles | DEAD-box RNA helicase Q motif profile. | 343 | 371 | IPR014014 | GO:0003724(InterPro) | |
| Cco09g0073 | 716 | Gene3D | - | 552 | 716 | IPR027417 | - | |
| Cco09g0073 | 716 | ProSiteProfiles | Superfamilies 1 and 2 helicase C-terminal domain profile. | 555 | 716 | IPR001650 | - | |
| Cco09g0073 | 716 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cco09g0073 | 716 | CDD | DEADc_EIF4A | 348 | 545 | - | - | |
| Cco09g0073 | 716 | PANTHER | ATP-DEPENDENT RNA HELICASE DBP3 | 338 | 702 | - | GO:0003723(PANTHER)|GO:0003724(PANTHER) | |
| Cco09g0073 | 716 | Pfam | DEAD/DEAH box helicase | 368 | 530 | IPR011545 | GO:0003676(InterPro)|GO:0005524(InterPro) | |
| Cco09g0073 | 716 | CDD | SF2_C_DEAD | 556 | 686 | - | - | |
| Cco09g0073 | 716 | Gene3D | - | 333 | 551 | IPR027417 | - | |
| Cco09g0073 | 716 | ProSitePatterns | DEAD-box subfamily ATP-dependent helicases signature. | 490 | 498 | IPR000629 | - | |
| Cco09g0073 | 716 | SMART | helicmild6 | 596 | 677 | IPR001650 | - | |
| Cco09g0073 | 716 | Pfam | Helicase conserved C-terminal domain | 569 | 677 | IPR001650 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco08g1501 | Cco-Chr8:26752415 | Cco09g0073 | Cco-Chr9:627065 | 4.50E-62 | dispersed | |
| Cco09g0073 | Cco-Chr9:627065 | Cco09g0297 | Cco-Chr9:2605205 | 3.30E-49 | dispersed | |
| Cco01g0071 | Cco-Chr1:528077 | Cco09g0073 | Cco-Chr9:627065 | 6.00E-49 | transposed | |
| Cco01g0858 | Cco-Chr1:9168774 | Cco09g0073 | Cco-Chr9:627065 | 5.20E-51 | transposed | |
| Cco02g2000 | Cco-Chr2:32960115 | Cco09g0073 | Cco-Chr9:627065 | 1.50E-53 | transposed | |
| Cco03g1863 | Cco-Chr3:33340744 | Cco09g0073 | Cco-Chr9:627065 | 1.70E-54 | transposed | |
| Cco06g1053 | Cco-Chr6:15226300 | Cco09g0073 | Cco-Chr9:627065 | 3.70E-50 | transposed | |
| Cco10g1180 | Cco-Chr10:24434808 | Cco09g0073 | Cco-Chr9:627065 | 1.60E-141 | transposed | |
| Cco10g1948 | Cco-Chr10:33045048 | Cco09g0073 | Cco-Chr9:627065 | 1.40E-54 | transposed | |
| Cco11g1716 | Cco-Chr11:29982862 | Cco09g0073 | Cco-Chr9:627065 | 5.10E-51 | transposed | |
| Cco01g0554 | Cco-Chr1:5405797 | Cco09g0073 | Cco-Chr9:627065 | 5.10E-39 | transposed | |
| Cco07g1466 | Cco-Chr7:28775908 | Cco09g0073 | Cco-Chr9:627065 | 1.70E-232 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0073 | K03257 | - | csv:101221456 | 815.839 |