Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0075 ATGGCAACTCCCATGGCTGAAGAAGCAACCATCGATTCCAATTCCACTGCCCACACGGTGATCGCGATTAGTAGGGACAAGAGCAGTCAATATGCGGTTAAATGGGCTGTGGAACACCTGTTCAATAGGAAGAACACTGGCGATTGCATCCTTATCCATGTTCGCAACCAGAGTTTGCATCCCCAGGAGGCGGATGCGGTTCCTAAGGAGTATCGTCCACCGACTGAAGCAGAGTTGCATCAGTTCTTCCTTCCCTATCGAGGATTCTGCGCACGAAAAGGAATAGTTACAAAGGAGATAATCATCCATGACATTGATGTTCCAAGTGCACTTATTGACTATGTCAGTAAACACTCCATTAGCAATATTGTTGTGGGTGCTTCCAGCCGGAATGCTATTTTGAGGAAGTTCAAGCATCCCGATGTCCCAACGTGCTTACTCAAATCAACTCCAGAATCATGCTCTGTATATGTCATAGCTAGAGGAAAAGTTCATACTAAGAGGTTGAGAAAGCGACATAAGTCACAAACTGATGCGAGAGAAACTCAAACCAGAACTCCAGAAATCGACAGGTCTCTATCAAAAATACAAAAATCAGCATATTCTAATATCTCAGAACTATCTGAAGATAGAAACAGGGATAGTTCTGGCACCAGTAATGATTCAATGTCAGGCATTAGTGACTTTTCGGGGCCTCTCAGTTTCAAATCAATTGAGACATCCTTTGAGAGCCCAGATTTTTCCTTAACCTCCTCAGAGATTAGTACGAGGAGCTTTGTCTCCTCTAACACCCCACCTTCCATTGAATCTGAGATGAGAAAGTTGAGGTTTGAACTCAAACAGACGATGGAAATGTATGACTCAGCTTCCAAGGAAGCTGTAGTAGCAAAACAAAAGGCAAATGAACTCCAACAGTTGAAGATGGATATGGAAGAAGACAGAAAAATTGAGCGTGGTAAATCTGCAGAAGAGGTTCTTAGAGCATTGGCAGAGTTTGAGAAGCAGAAGAACAAGGCTGCGACAGAAGCAGCTCTAATGGCACAGAAGTTAGCCGAATTAGAGAACCAGAAAAAACGAATTATTACTGAAGAAAAAGCTAGGATTGAGGCAGAGGAGAGGAAGAAAACAATGGAGTTATTTGAACGCAGTAATATCTGTTATAGACGATACAGCATTGACGAGATCGAAGCTGCAACAGATCATTTTAATGAGTCAAACAAGATTGGTGAAGGTGGCTATGGACCTGTTTACCAAGCCTTACTTGATCATACTCCTGTTGCCATTAAGATATTGCGACCAGATAGATCTCATGGGCAGAGACAATTCCAGCAAGAGATTGAGGTTCTAAGCCGCATGAGGCATCCGCACATGGTTCTCCTCTTAGGTGCCTGCCCAGAATACGGTTGCCTTGTTTATGAATATATGGAAAATGGGAGTTTGGAAGACCGTCTCTTCCAAAAAGATAACACTCCTCCAATGCCTTGGAGAACACGTTTCAGGATAGCTTCTGACATTGCCACTGCCCTACTCTTCCTTCATCAAATGAAGCCAGAACCTGTGGTGCATCGTGATCTCAAGCCAGCCAACATTCTCTTAGATCACAACTACGTGAGCAAAATAGGTGATGTGGGTTTGGCCAGGCTAGTTCCACCATCGGTTGCTGATAGTGTCACTCAATATCACATGACTGCTGCAGCTGGAACCTTCTGTTACATTGATCCAGAATATCAACAAACAGGAATGTTGGGGGTGAAATCAGATATTTACTCATTTGGTGTTCTGCTACTTCAGCTCATCACTGCAAGGTCACCGATGGGTCTTTCATATCAGGTTGAGGAGGCCATTGAACATGGCAAATTCCCGCAGATACTTGATCCTGCCATTACAGATTGGCCTATTGAAGATACTCTTGGACTCGCTCAATTAGCCCTGAAGTGCTGTGAGCTAAGGAAAAGAGATAGGCCCGACCTCCGTACAGTTCTATTGCCAGAACTGGTCAGGTTAAAAAATCTGGGGTCAGGCGAAATGCCACCAAAGGGCAAGCTCCCAAATGTCGGCAAAGCACGTGATCAACGGGCTTCCAACTCAGTTCCAATTTTGAATGGATCAGAGAGTGAGATCTATGTGAGAAAAAGATGGCAGCGATTGAAAGTGAGTACGAGATTTTGGAGCCAAAAGGGTATTGGTTTGAATACCGTTTCTCCGCAGATAAAGAAAAAATGGAGCTGGAACAACAGTGATGCAAAAGTCTTAAATATACCATTACCAATGAGTGGAAAACAAGTTGATGTACTCTCAAAGAAGCAGCAAAGCTCTGAACGCTGTTGGTCTTTTGTAGGTTGTGCTTCTGCTGCTACTATGGGGTTGAAGAAACTACACTCATTTTCTTAA 2391 43.66 MATPMAEEATIDSNSTAHTVIAISRDKSSQYAVKWAVEHLFNRKNTGDCILIHVRNQSLHPQEADAVPKEYRPPTEAELHQFFLPYRGFCARKGIVTKEIIIHDIDVPSALIDYVSKHSISNIVVGASSRNAILRKFKHPDVPTCLLKSTPESCSVYVIARGKVHTKRLRKRHKSQTDARETQTRTPEIDRSLSKIQKSAYSNISELSEDRNRDSSGTSNDSMSGISDFSGPLSFKSIETSFESPDFSLTSSEISTRSFVSSNTPPSIESEMRKLRFELKQTMEMYDSASKEAVVAKQKANELQQLKMDMEEDRKIERGKSAEEVLRALAEFEKQKNKAATEAALMAQKLAELENQKKRIITEEKARIEAEERKKTMELFERSNICYRRYSIDEIEAATDHFNESNKIGEGGYGPVYQALLDHTPVAIKILRPDRSHGQRQFQQEIEVLSRMRHPHMVLLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPPMPWRTRFRIASDIATALLFLHQMKPEPVVHRDLKPANILLDHNYVSKIGDVGLARLVPPSVADSVTQYHMTAAAGTFCYIDPEYQQTGMLGVKSDIYSFGVLLLQLITARSPMGLSYQVEEAIEHGKFPQILDPAITDWPIEDTLGLAQLALKCCELRKRDRPDLRTVLLPELVRLKNLGSGEMPPKGKLPNVGKARDQRASNSVPILNGSESEIYVRKRWQRLKVSTRFWSQKGIGLNTVSPQIKKKWSWNNSDAKVLNIPLPMSGKQVDVLSKKQQSSERCWSFVGCASAATMGLKKLHSFS 796
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 649760 653966 - CcPI632755_09g000750.1 Cco09g0075 186532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0075 796 FunFam Adenine nucleotide alpha hydrolase-like domain kinase 374 474 - -
Cco09g0075 796 PANTHER OS02G0152300 PROTEIN 21 681 IPR051348 -
Cco09g0075 796 SUPERFAMILY Protein kinase-like (PK-like) 379 661 IPR011009 -
Cco09g0075 796 Coils Coil 322 373 - -
Cco09g0075 796 Pfam Universal stress protein family 20 135 IPR006016 -
Cco09g0075 796 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 20 158 - -
Cco09g0075 796 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0075 796 Gene3D HUPs 5 161 IPR014729 -
Cco09g0075 796 Pfam Protein kinase domain 403 660 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0075 796 CDD STK_N 19 162 - -
Cco09g0075 796 Gene3D Phosphorylase Kinase; domain 1 368 474 - -
Cco09g0075 796 MobiDBLite consensus disorder prediction 167 192 - -
Cco09g0075 796 SMART serkin_6 402 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0075 796 Coils Coil 272 316 - -
Cco09g0075 796 MobiDBLite consensus disorder prediction 175 192 - -
Cco09g0075 796 Gene3D Transferase(Phosphotransferase) domain 1 475 671 - -
Cco09g0075 796 ProSiteProfiles Protein kinase domain profile. 402 666 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0075 796 MobiDBLite consensus disorder prediction 204 226 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1154 Cco-Chr8:23362529 Cco09g0075 Cco-Chr9:649760 3.40E-182 dispersed
Cco08g1414 Cco-Chr8:26072767 Cco09g0075 Cco-Chr9:649760 1.80E-173 dispersed
Cco09g0075 Cco-Chr9:649760 Cco11g1155 Cco-Chr11:22585727 3.20E-154 dispersed
Cco11g0188 Cco-Chr11:1845996 Cco09g0075 Cco-Chr9:649760 2.50E-113 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87073 PF00069 Pkinase 5.00E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0075 - - - 0.0