Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0080 | ATGAATCTAGGTGCGGCGGAGGAAGAATCGCCGCAGGAGATTCATATTCCGGCCGAAATCGATTGGCAAATGCTCGATAAATCTAAATTCTTCTTTCTCGGTGCAGCGTTGTTTTCAGGTGTTTCGGCTTCTCTTTACCCTATGGTGGTGTTGAAAACTCGGCAACAGGTTGCTCATTCGCAACTTCCTTGCATCAGAACTGCATTTTCACTTGTCCGCCATGAAGGTTTTCGAGCTCTCTACCGAGGATTTGGTACTTCTCTAATGGGGACTATCCCGGCTAGAGCTCTATACATGGGAGCTCTTGAGATTACAAAGAGCTATGTCGGAACTGCCACCATTAAAGTGGGATTTCCAGAGACTACTGCAGCTACCATGGCTAACGCAGCTGCTGGATTGAGTGCTGCAATGGCAGCTCAGCTTGTATGGACTCCTGTTGATGTTGTGAGTCAAAGGCTCATGGTTCAACCTAGCTACAACAATCCCAATTCTTCCTCAACTCATTACATCAATGGAATCGATGCATTTAGAAAGATCCTCAATGCCGATGGCCTCCGAGGCCTGTACCGAGGATTCGGGATATCGATTTTGACCTACGCACCATCGAATGCTGTGTGGTGGGCTTCTTATTATGTAGCTCAGCGGCTAGTTTGGGGTGGAATTGGCTGCTGTTATTATGCAAAGAAGGTTGATGAAGGCAATGAAAATGGAGGTTGTAGTAATGTCTACAAGCCCGATTCCAAGACTGTGATTGCGGTTCAGGGGGCGAGCGCAGCAATGGCCGGGAGTATATCGGCTTTGATAACAATGCCACTTGATACAATCAAGACAAGATTGCAAGTTTTGGATGGGGATGAAAATGGGAGAAGAGGGCCAACTATAGGACAGACATTGAGGAATTTGGTAAGGGAAGGAGGGTGGACGGCATGTTACCGAGGCTTGGCACCGCGATGCGCATCAATGTCGATGTCTGCAACGACGATGATCACTACATACGAGTTTTTGAAACGGCTATCAACAAAGAATCAAGAGAGTTTAACAAGCTAA | 1047 | 46.99 | MNLGAAEEESPQEIHIPAEIDWQMLDKSKFFFLGAALFSGVSASLYPMVVLKTRQQVAHSQLPCIRTAFSLVRHEGFRALYRGFGTSLMGTIPARALYMGALEITKSYVGTATIKVGFPETTAATMANAAAGLSAAMAAQLVWTPVDVVSQRLMVQPSYNNPNSSSTHYINGIDAFRKILNADGLRGLYRGFGISILTYAPSNAVWWASYYVAQRLVWGGIGCCYYAKKVDEGNENGGCSNVYKPDSKTVIAVQGASAAMAGSISALITMPLDTIKTRLQVLDGDENGRRGPTIGQTLRNLVREGGWTACYRGLAPRCASMSMSATTMITTYEFLKRLSTKNQESLTS | 348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 732778 | 733824 | + | CcPI632755_09g000800.1 | Cco09g0080 | 186537 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0080 | 348 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 26 | 108 | IPR018108 | - | |
| Cco09g0080 | 348 | SUPERFAMILY | Mitochondrial carrier | 23 | 335 | IPR023395 | - | |
| Cco09g0080 | 348 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 123 | 216 | IPR018108 | - | |
| Cco09g0080 | 348 | PANTHER | MITOCHONDRIAL SUBSTRATE CARRIER FAMILY PROTEIN J | 8 | 344 | - | - | |
| Cco09g0080 | 348 | Pfam | Mitochondrial carrier protein | 253 | 341 | IPR018108 | - | |
| Cco09g0080 | 348 | Pfam | Mitochondrial carrier protein | 36 | 110 | IPR018108 | - | |
| Cco09g0080 | 348 | Pfam | Mitochondrial carrier protein | 125 | 217 | IPR018108 | - | |
| Cco09g0080 | 348 | Gene3D | Mitochondrial carrier domain | 30 | 347 | IPR023395 | - | |
| Cco09g0080 | 348 | PRINTS | Mitochondrial carrier protein signature | 81 | 99 | IPR002067 | GO:0055085(InterPro) | |
| Cco09g0080 | 348 | PRINTS | Mitochondrial carrier protein signature | 132 | 154 | IPR002067 | GO:0055085(InterPro) | |
| Cco09g0080 | 348 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 249 | 338 | IPR018108 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g0080 | Cco-Chr9:732778 | Cco10g0173 | Cco-Chr10:1669990 | 7.20E-10 | dispersed | |
| Cco05g0806 | Cco-Chr5:6784783 | Cco09g0080 | Cco-Chr9:732778 | 1.40E-63 | transposed | |
| Cco11g0501 | Cco-Chr11:5245461 | Cco09g0080 | Cco-Chr9:732778 | 2.10E-71 | transposed | |
| Cco05g2054 | Cco-Chr5:29585425 | Cco09g0080 | Cco-Chr9:732778 | 1.10E-133 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0080 | K15121 | - | csv:101210602 | 628.632 |