Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0081 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTCTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCATGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAGGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 43.12 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIRQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 735488 737761 - CcPI632755_09g000810.1 Cco09g0081 186538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0081 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cco09g0081 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco09g0081 251 MobiDBLite consensus disorder prediction 147 174 - -
Cco09g0081 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cco09g0081 251 SMART PHD_3 197 245 IPR001965 -
Cco09g0081 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco09g0081 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cco09g0081 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cco09g0081 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cco09g0081 251 FunFam PHD finger alfin-like protein 190 246 - -
Cco09g0081 251 Pfam PHD-finger 198 244 IPR019787 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0433 Cco-Chr7:4899648 Cco09g0081 Cco-Chr9:735488 9.00E-64 dispersed
Cco08g1144 Cco-Chr8:23295016 Cco09g0081 Cco-Chr9:735488 1.20E-95 dispersed
Cco09g0081 Cco-Chr9:735488 Cco10g0716 Cco-Chr10:10246505 2.60E-94 dispersed
Cco11g0181 Cco-Chr11:1797278 Cco09g0081 Cco-Chr9:735488 2.70E-107 wgd
Cco03g1580 Cco-Chr3:30424522 Cco09g0081 Cco-Chr9:735488 1.90E-43 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59877 PF12165 Alfin 7.50E-68 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0081 K26274 - csv:101222322 500.745