Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0081 ATGGATGGAGGTGGCGCAGTGCACAATCGCTCAGTGGAAGATGTCTTCAGTGATTTTAGGGGACGAAGAAACGGCGTCATCAAAGCCCTCACCGTAGATGTTGAAGAGTTCTATCAACAATGTGATCCTGAGAAGGAAAATCTATGCTTGTATGGCTTTCCAAATGAAGTATGGGAAGTTAATTTACCTGCTGAAGAAGTACCTCCAGAGCTTCCAGAGCCAGCGTTGGGTATTAATTTTGCAAGAGATGGCATGCAAGAAAGGGATTGGTTGGCATTGGTTGCTGTCCATAGTGATTCTTGGTTGCTCTCTGTTGCCTACTATTTTGGTGCGAGATTTGGATTTGATAAAACTGATAGGAGGCGGCTTTTTAATATGATAAATGATTTGCCAACTGTATTTGAAGTAGTCACAGGTATTGCAAAGAAACAAGTTAAGGAAAAGTCATCAAGTGCTAATGGTAGCAAATCCAAGTCAAGCTTAAAAACGAGGGAAGCTGAAATGCAAGGAATGTATGCTAGGCAGCCGCAGGCAAGGGAAGAGGTAGAGACGTTGTATGAAGAAGATGAAGACGAGCATGGTGACACCTTATGTGGGGCATGCGGTGAGAATTATGCTTCAGATGAATTTTGGATTTGCTGTGATATCTGTGAGAAATGGTTCCATGGGAAGTGTGTTAGAATAACTCCTGCTAAAGCCGAGCACATTAGGCAGTACAAATGCCCATCTTGCAGCAACAAGAGAAGCCGCATTTAA 756 43.12 MDGGGAVHNRSVEDVFSDFRGRRNGVIKALTVDVEEFYQQCDPEKENLCLYGFPNEVWEVNLPAEEVPPELPEPALGINFARDGMQERDWLALVAVHSDSWLLSVAYYFGARFGFDKTDRRRLFNMINDLPTVFEVVTGIAKKQVKEKSSSANGSKSKSSLKTREAEMQGMYARQPQAREEVETLYEEDEDEHGDTLCGACGENYASDEFWICCDICEKWFHGKCVRITPAKAEHIRQYKCPSCSNKRSRI 251
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 735488 737761 - CcPI632755_09g000810.1 Cco09g0081 186538

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0081 251 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Cco09g0081 251 Pfam Alfin 11 138 IPR021998 GO:0006355(InterPro)|GO:0042393(InterPro)
Cco09g0081 251 MobiDBLite consensus disorder prediction 147 174 - -
Cco09g0081 251 SUPERFAMILY FYVE/PHD zinc finger 187 249 IPR011011 -
Cco09g0081 251 SMART PHD_3 197 245 IPR001965 -
Cco09g0081 251 PANTHER CPG BINDING PROTEIN 9 250 IPR045104 GO:0000976(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006355(InterPro)|GO:0042393(InterPro)
Cco09g0081 251 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Cco09g0081 251 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Cco09g0081 251 CDD PHD_AL_plant 197 247 IPR044104 -
Cco09g0081 251 FunFam PHD finger alfin-like protein 190 246 - -
Cco09g0081 251 Pfam PHD-finger 198 244 IPR019787 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0081 K26274 - - csv:101222322 500.745
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g0433 Cco-Chr7:4899648 Cco09g0081 Cco-Chr9:735488 9.00E-64 dispersed
Cco08g1144 Cco-Chr8:23295016 Cco09g0081 Cco-Chr9:735488 1.20E-95 dispersed
Cco09g0081 Cco-Chr9:735488 Cco10g0716 Cco-Chr10:10246505 2.60E-94 dispersed
Cco11g0181 Cco-Chr11:1797278 Cco09g0081 Cco-Chr9:735488 2.70E-107 wgd
Cco03g1580 Cco-Chr3:30424522 Cco09g0081 Cco-Chr9:735488 1.90E-43 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g122 . . . . . . . . Cmo08g00755 Cmo17g00678 . . . . . Cpe12g00597 Cpe17g00469 . . . . . . . . . . . . . . . . . . Lsi02g02913 Csa07g02370 . Cme01g02823 . . . . . . . . . . . . . Car08g00668 Car17g00661 . . Bhi09g00348 . . . . . . Cla09g00078 Cam09g0081 Cec09g0082 Cco09g0081 Clacu09g0089 . Cre09g0076 . . Chy01g02184 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco10g0716 . 1 252 Alfin-like Transcription Factor Family AT1G14510 84.1 3.9e-114 407.9
Cco11g0181 . 9 248 Alfin-like Transcription Factor Family AT1G14510 70.9 2.6e-94 342.0
Cco09g0081 . 10 248 Alfin-like Transcription Factor Family AT1G14510 67.1 7.1e-92 334.0
Cco08g1144 . 9 225 Alfin-like Transcription Factor Family AT1G14510 69.6 2.3e-82 302.4
Cco10g2197 . 1 237 Alfin-like Transcription Factor Family AT1G14510 57.5 8.2e-80 293.9
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT5G26210 77.2 8.2e-112 400.2
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT5G26210 65.4 8.8e-98 353.6
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT5G26210 72.5 2.7e-94 342.0
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT5G26210 70.9 2.1e-91 332.4
Cco10g2197 . 1 239 Alfin-like Transcription Factor Family AT5G26210 57.1 7.0e-79 290.8
Cco11g0181 . 1 250 Alfin-like Transcription Factor Family AT3G42790 71.3 4.9e-101 364.4
Cco09g0081 . 1 250 Alfin-like Transcription Factor Family AT3G42790 63.7 6.2e-96 347.4
Cco10g0716 . 9 255 Alfin-like Transcription Factor Family AT3G42790 72.1 6.0e-91 330.9
Cco08g1144 . 1 225 Alfin-like Transcription Factor Family AT3G42790 66.5 4.6e-83 304.7
Cco10g2197 . 9 239 Alfin-like Transcription Factor Family AT3G42790 58.3 1.2e-78 290.0
Cco10g2197 . 6 240 Alfin-like Transcription Factor Family AT5G05610 75.1 3.0e-103 371.7
Cco11g0181 . 8 250 Alfin-like Transcription Factor Family AT5G05610 65.2 5.2e-92 334.3
Cco09g0081 . 10 250 Alfin-like Transcription Factor Family AT5G05610 64.5 2.2e-90 328.9
Cco10g0716 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.2 3.1e-84 308.5
Cco08g1144 . 8 225 Alfin-like Transcription Factor Family AT5G05610 65.6 6.0e-80 294.3
Cco10g2197 . 44 240 Alfin-like Transcription Factor Family AT3G11200 74.8 7.8e-85 310.5
Cco11g0181 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.7 3.6e-74 275.0
Cco09g0081 . 44 250 Alfin-like Transcription Factor Family AT3G11200 65.2 1.1e-73 273.5
Cco10g0716 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.2 7.1e-70 260.8
Cco08g1144 . 44 225 Alfin-like Transcription Factor Family AT3G11200 64.8 1.7e-63 239.6
Cco10g0716 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 1.5e-76 283.1
Cco11g0181 . 1 158 Alfin-like Transcription Factor Family AT2G02470 76.6 6.8e-66 247.7
Cco08g1144 . 1 158 Alfin-like Transcription Factor Family AT2G02470 77.2 1.3e-64 243.4
Cco09g0081 . 10 160 Alfin-like Transcription Factor Family AT2G02470 77.5 3.2e-63 238.8
Cco10g2197 . 1 156 Alfin-like Transcription Factor Family AT2G02470 65.4 4.6e-54 208.4
Cco07g0433 . 8 120 Alfin-like Transcription Factor Family AT2G02470 70.4 1.6e-43 173.3
Cco08g1144 . 1 167 Alfin-like Transcription Factor Family AT5G20510 76.8 7.3e-73 270.4
Cco11g0181 . 1 160 Alfin-like Transcription Factor Family AT5G20510 77.0 6.9e-71 263.8
Cco09g0081 . 1 162 Alfin-like Transcription Factor Family AT5G20510 75.2 3.2e-68 255.0
Cco10g0716 . 3 172 Alfin-like Transcription Factor Family AT5G20510 71.5 7.8e-67 250.4
Cco10g2197 . 8 158 Alfin-like Transcription Factor Family AT5G20510 61.8 3.5e-51 198.4
Cco07g0433 . 7 111 Alfin-like Transcription Factor Family AT5G20510 72.4 2.1e-43 172.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000240 6 20 6 5 4 4 8 4 4 3 3 4 4 3 3 7 4 8 7 3 3 4 4 4 5 2 5 11 7 4 159
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59877 PF12165 Alfin 7.50E-68 No_clan Cco TF