Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0100 ATGGGTTTCAAAAAGCTATTCTCTCTAAAATATTTGATACCCAGTTGTTTAAAGCCAAAGAAGCTGCTCACAGGCCCTTCTTCTGCTGGATTTCAAACCTCAAAAAAAATCTCTCTTAGAAGAATCTTATCATTGTCTGATATGAGTGTTAGATCATCTTTATCAGTTATTAGTGATCTTTCAAACTCTTGTAATGGTTCAAATCTTCAAATTTTCACCTTTAAAGAACTTGAGGAAGTCACTGAAAACTTCACCAAAAGCAATTATTTGGGTGAAGGAGGATTTGGGCCTGTGTTTAAAGGGTTCATTGAAGACAATTTCAAGCCTGGTTTGAAATCACAGCAAGTGGCTGTGAAGATTTTGGATTTGGATGGCTCTCAAGGCCATAGAGAGTGGCTGGCTGAAGTGTTTTTTCTTGGGCAATTGAGACACCCAAATCTTGTTAATTTGATTGGATATTGTCTTGAAGATGAACAGAGGCTTCTTGTATATGAATATATGGAAGGAGGAAACTTGGAGAATCTGTTGTTTAAATGTTGTTATGTTTCAAATTTGACATGGTTACAAAGGATAAAGATTGCATTAGGATCAGCAAAAGGCCTTGCTTTCTTGCACGAAACCGAAAAACCGATCATTTTTCGAGATTTCAAGGCTTCGAACATCTTACTCGACTCGGATTACAATCCGAAACTTTCGGATTTCGGGTTGGCCATAAATGGTCCCGACGAAGATGATACACATGTAACGACTCGAATCATGGGGACGGAAGGTTATGCAGCCCCAGAATACATCATGACAGGTCATTTGTCAACAATGAGTGATGTGTTCAGCTTTGGGGTGCTCCTATTAGAGTTGCTAACCGGTCGACGAGCGATCGACAAGAATCGACCTAGCCGAGAACAGAACTTGGTGGCTTGGGGAAGACATCTTTTGAAAGATCACCACAAACTTGAAAAGATAATTGATCCAAGGCTTGAGGGGCATTACTCAAATGAAGGGGCTAAAAAATTGGCTACAATAGCTCACCAATGCCTTAGCCACCACCCAAAATGTAGGCCCTCAATGAGCACAGTGGTGAAGGATTTGGAGGTTGTTCTTAACATGAAAGAGTTTCTAACTGAGCGATTTGTGTATATTGTCCCAAGTGAAGAGATGAAAGAGGTGGAAAGACACGGTGACCGAAAAGGTCGAAGCTATAGGCTTCGGGTGTCGTCATCGAGATTGAGATCTGGTGCTGTTCATTCTGATACAGCCTTTATGGAAAATTTATAG 1272 40.57 MGFKKLFSLKYLIPSCLKPKKLLTGPSSAGFQTSKKISLRRILSLSDMSVRSSLSVISDLSNSCNGSNLQIFTFKELEEVTENFTKSNYLGEGGFGPVFKGFIEDNFKPGLKSQQVAVKILDLDGSQGHREWLAEVFFLGQLRHPNLVNLIGYCLEDEQRLLVYEYMEGGNLENLLFKCCYVSNLTWLQRIKIALGSAKGLAFLHETEKPIIFRDFKASNILLDSDYNPKLSDFGLAINGPDEDDTHVTTRIMGTEGYAAPEYIMTGHLSTMSDVFSFGVLLLELLTGRRAIDKNRPSREQNLVAWGRHLLKDHHKLEKIIDPRLEGHYSNEGAKKLATIAHQCLSHHPKCRPSMSTVVKDLEVVLNMKEFLTERFVYIVPSEEMKEVERHGDRKGRSYRLRVSSSRLRSGAVHSDTAFMENL 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 870611 872243 + CcPI632755_09g001000.1 Cco09g0100 186557
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0100 423 ProSiteProfiles Protein kinase domain profile. 84 372 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0100 423 Gene3D Transferase(Phosphotransferase) domain 1 167 377 - -
Cco09g0100 423 SUPERFAMILY Protein kinase-like (PK-like) 61 364 IPR011009 -
Cco09g0100 423 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 167 375 - -
Cco09g0100 423 Pfam Protein tyrosine and serine/threonine kinase 87 362 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0100 423 FunFam Serine/threonine-protein kinase BIK1 51 166 - -
Cco09g0100 423 Gene3D Phosphorylase Kinase; domain 1 55 166 - -
Cco09g0100 423 CDD STKc_IRAK 90 363 - -
Cco09g0100 423 PANTHER OS01G0588500 PROTEIN-RELATED 60 365 IPR050823 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1810 Cco-Chr5:26876733 Cco09g0100 Cco-Chr9:870611 6.80E-108 dispersed
Cco09g0100 Cco-Chr9:870611 Cco11g1152 Cco-Chr11:22539620 4.40E-102 dispersed
Cco11g0166 Cco-Chr11:1711491 Cco09g0100 Cco-Chr9:870611 2.30E-121 wgd
Cco03g1559 Cco-Chr3:30230959 Cco09g0100 Cco-Chr9:870611 3.10E-122 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87074 PF07714 PK_Tyr_Ser-Thr 5.00E-46 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0100 - - - 0.0