Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0135 ATGTTCATCCTTCGACTGAGTGTCTTGGAGAATCTAAAGGGCAGTCGTCGAAATTCTTGGGCTCGTGGGTTAGACCGTACGATTGGTTTGTTCAAAAATTCTTTAGGAAAAGTAAAGAAATCGGTTACTTGTTTTAATCAACGTAAGTGTTTGACCTCAACTTGGAAATTCCGGAATTGGATCTACGGAATACTTAGGGTTTTCGATTTTCCTGATTTTTTCCATTCGCTGCTCGATCTTCCTTCCTCCAGTCGGTTGAATTCCGAGGGCTCTTTTCGCATTCAGAGCCCATCGGCAGAAGAAGACTGGCTTCTTGCAATCCCCTGTGGTAGTGTTCCTGAAGATAAATCTAAGAAGGATAATCCAGAGGATCAGCAGAGATATCCCTTTCCACAATTAAATTCTTCTGGGCGTTTGGAGGTCCAGGTTTTGTCCAATCCTAGTAAAGATCAGTTTTGTAGGGTTCTTGAATCATATAAACCAAACATTGTTTACTTACAAGGGGAACAACTTGAGAATGATGAAGTTGGTTCTTTAGTATGGGGAGATGTTGATTTGTCCACCGTAGAAGCGATAAGTGGGCTCTTTAGTTATCCGTTGTCCACCACTGTATATTTGGAAATAGCAAAGGGAGATGAAGTAGCTGATGCACTTCACTCCAAGGGTATTCCTTATGTCATATACTGGAGAAGCACCTTTTCTTGTTATGAAGCATGCCATTTCCGTAATGCATTCCTTTCGGTTCTTCAGAGTTCATCTGCTCACACATGGGACGCATTTCAACTTGCAAATGCTTCATTTAGGATGTATTGCTTGGGAAACAACCTTGTTTTTCCTAACAGTAGTCATGAAGAAGTTAGTGAAGATCGGGGTCCACATCTTCTAGGGGAACGCTTGAAAATAAATATCGAACCCCTTGAGAAAGAGGCAGCTGACGATGAAGAAAGTTCATCGGAAATTCCTTCTGTGAGCATACTTGATAATGATGTTGAAATGAGATTTCTTGTATGTGGAGAACCAGGCTCATTGGATGCTTATGTATTAGGAGCTCTGGAGGATGGTCTTAACGCCCTCTTGGACATTGAAATTCGGGGGAGCAAACTTCACGGCAAGTTCAGTGCCCCTCCTCCACCTCTTCAGGCAGGAACACTCTCTAATGGTGTTGTGACCATGCGCTGTGATATATCGACATGCAGTTTTGCCCACATCTCACTATTGGTGTCAGGTAGTGCACAAGCTTGTTTTGATGATCAGCTATTTGAAAATTATATAAAGAATGAGATTGTAGACAGAGGCGAACTAGTGCAGACACTAATCGATGGTGAAGGAACCAAACGCTTATCTGAGCCACGGAAATCTGTTTCAATTGCTTGTGGGGCAACAGTTTTTGAAGTTAGCATGAAGGTCCCTTCATGGGCATCTCAGATTTTGAGGCAGTTAGCCCCTGATGTTTCTTATCGAAGTTTAGTAGGACTGGGCATTGCCAGCATCCAGGGTTTTTCTGTTGCTTCTTTTGAGAAGGATGATGCTGAACGCCTCCTCTTCTTCTGTTCAAGGAAGGAAAAAGATTTATTTCTGAGCAATTTAACCCATAGCACACTCCCAAGCTGGTTGAAACCACCTGCTCCTAGAAAGAGATCGAAATATATGAAAGATACAAGCCTTGGTTCTCATGATGTTATTGAACATCTGAAGGTTTCGTCTGGTAGGAGAATAGATAGTGTGAACATGGAAATAGGATCAAGGAATGGTTTTAGCACTCCCATGTTCCCATTCCCAAGAAGGAGAGGCATGAAAATTGCTGCAATGAGGCCCATTCCTCATGTTAATCGCCATAAAATGATCTCTTTTCATGGAATAGAGACAGGTGGGCACAATGGAAGCCTGGTTAAAGCTAGTGCTCCTTCTAGTAATCCCACAAAGCATGTGACTGTAGGTTCAGCTTCAGTTTTTCAACAAAAAATGTTTCCAAGTGCATCTCAATATAAACAAATCATTCCCATGAATCCATTACCTTTGAAGAAGCACGGTTGTGGCAGAAGCCCTATACAGGCTTGCTTTGAGGATGAATTTTTGAAGGATTTGCTGCAGTTTTTAGCTCTTCGAGGTCACAAACGACTTATTCCTCCAGGTGGGCTTGCCGAGTTTCCAGATGCTATACTCAATGGAAAGCGTCTTGACCTTTACAACCTGTACAAGGAGGTGGTTTCAAGAGGTGGCTTCCGTGTTGGAAATGGCATTAACTGGAAAGGACAGATCTTTTCAAAGATGCGCAATTACACCATGACCAATAGAATGACTGGTGTCGGAAATACACTTAAAAGACATTACGAGACTTATCTTCTAGAGTATGAATTGGCACATGAAGATGTAGATGGTGAATGTTGCCTGTTGTGTCACAGTAGTGCAGCCGGGGACTGGGTGAACTGTGGCATTTGTGGGGAGTGGGCACACTTCGGCTGTGACAGAAGGCAGGGTCTCGGCGCATTTAAGGATTATGCAAAAACTGATGGATTAGAATACATATGTCCACACTGTAGTGTTGCTAATTATAAGAAGAAGAAAGTGGCAAATGGGTTGTCTCCAGGCTTCTCCTCAAGACCAATATGA 2610 42.68 MFILRLSVLENLKGSRRNSWARGLDRTIGLFKNSLGKVKKSVTCFNQRKCLTSTWKFRNWIYGILRVFDFPDFFHSLLDLPSSSRLNSEGSFRIQSPSAEEDWLLAIPCGSVPEDKSKKDNPEDQQRYPFPQLNSSGRLEVQVLSNPSKDQFCRVLESYKPNIVYLQGEQLENDEVGSLVWGDVDLSTVEAISGLFSYPLSTTVYLEIAKGDEVADALHSKGIPYVIYWRSTFSCYEACHFRNAFLSVLQSSSAHTWDAFQLANASFRMYCLGNNLVFPNSSHEEVSEDRGPHLLGERLKINIEPLEKEAADDEESSSEIPSVSILDNDVEMRFLVCGEPGSLDAYVLGALEDGLNALLDIEIRGSKLHGKFSAPPPPLQAGTLSNGVVTMRCDISTCSFAHISLLVSGSAQACFDDQLFENYIKNEIVDRGELVQTLIDGEGTKRLSEPRKSVSIACGATVFEVSMKVPSWASQILRQLAPDVSYRSLVGLGIASIQGFSVASFEKDDAERLLFFCSRKEKDLFLSNLTHSTLPSWLKPPAPRKRSKYMKDTSLGSHDVIEHLKVSSGRRIDSVNMEIGSRNGFSTPMFPFPRRRGMKIAAMRPIPHVNRHKMISFHGIETGGHNGSLVKASAPSSNPTKHVTVGSASVFQQKMFPSASQYKQIIPMNPLPLKKHGCGRSPIQACFEDEFLKDLLQFLALRGHKRLIPPGGLAEFPDAILNGKRLDLYNLYKEVVSRGGFRVGNGINWKGQIFSKMRNYTMTNRMTGVGNTLKRHYETYLLEYELAHEDVDGECCLLCHSSAAGDWVNCGICGEWAHFGCDRRQGLGAFKDYAKTDGLEYICPHCSVANYKKKKVANGLSPGFSSRPI 869
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1196140 1202137 - CcPI632755_09g001350.1 Cco09g0135 186592

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0135 869 Pfam ARID/BRIGHT DNA binding domain 689 785 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 SUPERFAMILY FYVE/PHD zinc finger 781 849 IPR011011 -
Cco09g0135 869 SMART bright_3 686 790 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 Gene3D - 682 785 IPR036431 GO:0003677(InterPro)
Cco09g0135 869 ProSiteProfiles ARID domain profile. 685 789 IPR001606 GO:0003677(InterPro)
Cco09g0135 869 SMART ARID_2 682 785 - -
Cco09g0135 869 MobiDBLite consensus disorder prediction 113 132 - -
Cco09g0135 869 CDD ARID 688 785 - -
Cco09g0135 869 CDD PHD_ARID4_like 795 846 - -
Cco09g0135 869 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 786 855 IPR013083 -
Cco09g0135 869 SUPERFAMILY ARID-like 688 800 IPR036431 GO:0003677(InterPro)
Cco09g0135 869 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 4 96 861 IPR042293 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0135 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco07g1514 Cco-Chr7:29168939 Cco09g0135 Cco-Chr9:1196140 6.10E-291 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g26 . Blo06g00765 . Bda10g00889 . Bpe10g00717 Bma10g00669 . . Cmo17g00636 . . . Car14g01069 . Cpe12g00555 . Bhi01g02835 . . . . . . . . . . . . . . . Cone7ag1258 . Lsi02g02861 Csa07g02313 . Cme01g02766 Blo07g00805 . Bda05g00623 . Bpe03g00693 . . . Sed04g2378 Cmo01g00019 . . Cma17g00656 . Car17g00618 . . Bhi09g00271 Tan06g0071 Cmetu01g1064 . Hepe03g1390 . . Cla09g00122 Cam09g0131 Cec09g0134 Cco09g0135 Clacu09g0138 . Cre09g0123 . Csa03g02792 Chy01g02133 Cme04g01382
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g0804 . 119 470 ARID Transcription Factor Family AT1G04880 58.4 9.7e-108 387.5
Cco10g0007 . 300 570 ARID Transcription Factor Family AT1G20910 61.4 1.4e-91 333.6
Cco05g1750 . 16 309 ARID Transcription Factor Family AT1G76110 68.1 1.9e-111 399.4
Cco10g0007 . 279 600 ARID Transcription Factor Family AT1G76510 60.2 1.0e-109 394.0
Cco07g1514 . 1 764 ARID Transcription Factor Family AT3G43240 59.1 1.5e-259 892.5
Cco09g0135 . 120 859 ARID Transcription Factor Family AT3G43240 59.2 6.1e-256 880.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001323 3 5 2 2 2 2 3 2 2 2 2 2 2 2 2 3 2 2 2 2 2 2 2 2 2 2 2 9 3 2 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59884 PF01388 ARID 3.90E-15 CL0123 Cco TR