Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0138 ATGTGGTGGAGATCGGCCTCTTTCATCCTCGACAAGCAGCAGGCTGAAGGCGCTTCAAACCCCCCCGAAACCCTTTCTATCTCCCCACCCGCGCAATCTTCTATGGCGGACGCATTTCAAAACCCTAACCCTAAAATCTCAGCCTATTACCAAAGTAGGGCTGCCCACACCGCTGTCGTCACCAGTGATTGGCTCGCCCAGGCGCAGGCCGCTGTCGGATTCCAAACCGACGATCATATACTGTCGGAAACTGATGCCAGGGACTCTGAATCCGGTAAGCCGTTCAGTGTGATCGATGAGTTTAATAACTGGAGGAAACAGCCGGATTTGGCCGAGGCTGTTGCAGCTATTCGGGCTTTGGCGGCTGTAATAAGGTCTAGTCAAGCCACGACTATGATGGAGCTCGAAATTGAGCTGAAGAAGGCTTCGGACTCTCTAAAATCGTGGGATACAACTTCGATATCATTAACAGCTGGCTGTGATTTGTTCATGCGATATGTAACTCGAACATCAGCTTTAGAATATGAGGACTTCAAGTCTGCTAAATCTCGTCTGATTGAACGTGCAGAAAAGTTTGGGGAGATATCTTGTAAGGCACGGAGAATTATTGCAATGCTTAGTCAGGATTTCATTTTTGATGGCTGTACAATTTTGGTCCATGGTTTCTCTAGAGTTGTTATGGAAGTTCTGAGGTTGGCTGCACAGAATAAGAAGCTCTTTAGAGTGTTTTGCACAGAAGGAAGACCGGACAGGACAGGTTTGCGTTTATCCAACGAGCTAGCTAAACTTGATGTCCCTGTAAAGCTCCTAATTGACTCAGCAGTAGCATATACCATGGATGAGGTTGATATGGTTCTTGTTGGGGCCGATGGAGTAGTTGAGAGTGGAGGTATAATCAATATGATGGGCACGTATCAAATTGCATTAGTGGCACATAGCATGAACAAACCGGTGTATGTGGCCGCGGAGAGTTACAAGTTTGCTCGACTGTACCCATTGGATCAAAAAGACATGGCCCCTGCTCTGCGTCCAATAGATTTTGGGGTTCCAATCCCATCCAAGGTTGAAGTTGAAAAATCTGCTCGAGACTATACTCCTCCTCAATACCTTACTCTTCTCTTTACAGATTTGGGCGTTCTCTCTCCATCTGTGGTGAGTGACGAACTCATCCAACTATATTTATAG 1185 46.67 MWWRSASFILDKQQAEGASNPPETLSISPPAQSSMADAFQNPNPKISAYYQSRAAHTAVVTSDWLAQAQAAVGFQTDDHILSETDARDSESGKPFSVIDEFNNWRKQPDLAEAVAAIRALAAVIRSSQATTMMELEIELKKASDSLKSWDTTSISLTAGCDLFMRYVTRTSALEYEDFKSAKSRLIERAEKFGEISCKARRIIAMLSQDFIFDGCTILVHGFSRVVMEVLRLAAQNKKLFRVFCTEGRPDRTGLRLSNELAKLDVPVKLLIDSAVAYTMDEVDMVLVGADGVVESGGIINMMGTYQIALVAHSMNKPVYVAAESYKFARLYPLDQKDMAPALRPIDFGVPIPSKVEVEKSARDYTPPQYLTLLFTDLGVLSPSVVSDELIQLYL 394
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1213173 1216747 - CcPI632755_09g001380.1 Cco09g0138 186595
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0138 394 Gene3D - 94 195 IPR042528 -
Cco09g0138 394 PANTHER TRANSLATION INITIATION FACTOR EIF-2B SUBUNIT ALPHA 92 394 IPR051501 GO:0003743(PANTHER)|GO:0005085(PANTHER)|GO:0005851(PANTHER)|GO:0006413(PANTHER)
Cco09g0138 394 FunFam Translation initiation factor eIF-2B subunit alpha 198 394 - -
Cco09g0138 394 SUPERFAMILY NagB/RpiA/CoA transferase-like 110 393 IPR037171 -
Cco09g0138 394 Gene3D - 198 394 IPR042529 -
Cco09g0138 394 MobiDBLite consensus disorder prediction 13 33 - -
Cco09g0138 394 FunFam Translation initiation factor eIF-2B subunit alpha 93 195 - -
Cco09g0138 394 Pfam Initiation factor 2 subunit family 107 382 IPR000649 GO:0044237(InterPro)
Cco09g0138 394 Coils Coil 132 152 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0138 K03239 - csv:101211420 742.651