Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0143 | ATGAAAGAGACCGATATAATGGAAAAGCCCATCGCCGCCGGCCTCTCAAATTCCGGCAACCACCACCAAAAGCCCAAAAACAAATCAAAAAAGCTTCTAATTTTAGCCCTGTCTTCGACCCTGCTCCTGGTCGGCGCCGTCGTGGGGATCGTCGCCGGAGTGACGAAATCGGAAAACTCCGGGAAATCACACGCCATTGTGAAGAGCACGTGCAGCAGCACGCTTTATCCGGATCTGTGCATTTCTGCAATTTCGAATAGTGAAGGGGCTATGTTGAAAGTTAGTAATCAAAAGGATGTGATTGAGGTGTCAATTAATATAACGGTGAAAGCTGTGGAAGATAATTACTTTAGAGTGAAGAAATTGTGTGGATTGAAGAATATTAGCCATAGAGAGAAAATTGCTCTTCATGATTGTCTTGAAACAATTGATGAGACGCTTGATGAACTTCATAAAGCTATTGTGGACCTTCATCAATACCCCAATAAAAAGTCTCTTAATCAACACGCTGATGATCTTAAAACCTTGCTTAGTTCCGCCATTACCAATCAGGAGACATGCCTCGACGGATTTTCGCACGACGAGACAGACAAAAACCTTCGGGATAAGCTAAAAGAGGGGCAAGAGGAAGTAGAACACATGTGCAGCAATGCATTAGCCATGATTAAGAACATGACAGATACAGACATAGCCAACTACGAGGCTAAAATGGGAACAACCAACAATAGAAAGCTCAAGGAAGAACAGAACAACGGCGACGGCATCCAGTGGCCGGAGTGGCTGTCGGCCGGAGACCGGCGGCTGCTTCAGTCGTCGTCCGTGAAGCCAGATGTGGTGGTGGCGGCGGATGGCAGTGGGAACTTCCGGACGGTGGCGGCCGCCGTGGCGGCGGCGCCGGAGAAAAGTAGCAAGAGATATGTGATAAGAATTAAAGCTGGGGTTTATAGAGAAAATGTGGAAGTGCCGAAGAAGAAAACGAATATTATGTTTATGGGAGATGGAAGACGTAACACTATAATTACCGGCAGCCGGAATGTGGTCGACGGCAGCACCACTTTTAACTCTGCAACCGTCGCTGCGGTGGGAGGAGGATTTCTAGCGCGTGACATCACATTCCAAAACACAGCCGGTCCGTCGAAGCACCAAGCGGTGGCTCTCCGTGTCGGAGCAGATCTCTCCGCCTTCTACCAATGCGACATGTTGGCTTATCAAGACACTCTCTACGTCCACTCCAACCGTCAATTCTACATCAACTGTCTCATCTCCGGCACCGTCGATTTCATCTTCGGCAACGCCGCCGCCATTTTCCAAGACTGTGACATTCACGCGCGCAAACCAAACTCAGGTCAGAAAAATATGGTCACGGCCCAAGGACGGTCCGACCCGAACCAAAATACCGGAATCATTATCCAGAAATGCCGGATCGGTTCCACGTCGGATCTCCTACCGGTCCAGAAGAACTTCCCGACGTTCCTTGGAAGGCCGTGGAAGGAATATTCGAGAACGGTGATTATGCAGTCAACGATTAGTGACGTCATTGACCCGAAGGGATGGCATGAGTGGAGCGGTAATTTTGCACTTAACACGTTGTTTTACGGTGAGTATCAGAATACTGGACCGGGGGCTTCAACCGGGGGGAGGGTGACGTGGAAGGGATTTAGGGTAATTCGGAGTGCCACAGAGGCTGAAAGTTTTACCGCAGGTAAATTTATTGGCGGTGGGAGTTGGTTGCGCTCTACTGGCTTTCCTTTCTCTCTAGGATTATGA | 1767 | 49.07 | MKETDIMEKPIAAGLSNSGNHHQKPKNKSKKLLILALSSTLLLVGAVVGIVAGVTKSENSGKSHAIVKSTCSSTLYPDLCISAISNSEGAMLKVSNQKDVIEVSINITVKAVEDNYFRVKKLCGLKNISHREKIALHDCLETIDETLDELHKAIVDLHQYPNKKSLNQHADDLKTLLSSAITNQETCLDGFSHDETDKNLRDKLKEGQEEVEHMCSNALAMIKNMTDTDIANYEAKMGTTNNRKLKEEQNNGDGIQWPEWLSAGDRRLLQSSSVKPDVVVAADGSGNFRTVAAAVAAAPEKSSKRYVIRIKAGVYRENVEVPKKKTNIMFMGDGRRNTIITGSRNVVDGSTTFNSATVAAVGGGFLARDITFQNTAGPSKHQAVALRVGADLSAFYQCDMLAYQDTLYVHSNRQFYINCLISGTVDFIFGNAAAIFQDCDIHARKPNSGQKNMVTAQGRSDPNQNTGIIIQKCRIGSTSDLLPVQKNFPTFLGRPWKEYSRTVIMQSTISDVIDPKGWHEWSGNFALNTLFYGEYQNTGPGASTGGRVTWKGFRVIRSATEAESFTAGKFIGGGSWLRSTGFPFSLGL | 588 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1255122 | 1260519 | - | CcPI632755_09g001430.1 | Cco09g0143 | 186600 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0143 | 588 | ProSitePatterns | Pectinesterase signature 2. | 421 | 430 | IPR033131 | - | |
| Cco09g0143 | 588 | Gene3D | - | 270 | 588 | IPR012334 | - | |
| Cco09g0143 | 588 | FunFam | Pectinesterase | 271 | 588 | - | - | |
| Cco09g0143 | 588 | PANTHER | PECTINESTERASE | 31 | 579 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
| Cco09g0143 | 588 | Pfam | Pectinesterase | 277 | 573 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
| Cco09g0143 | 588 | ProSitePatterns | Pectinesterase signature 1. | 302 | 321 | IPR018040 | - | |
| Cco09g0143 | 588 | NCBIfam | pectinesterase inhibitor domain | 38 | 225 | IPR006501 | GO:0004857(InterPro) | |
| Cco09g0143 | 588 | SUPERFAMILY | Pectin lyase-like | 273 | 587 | IPR011050 | - | |
| Cco09g0143 | 588 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 66 | 226 | IPR035513 | - | |
| Cco09g0143 | 588 | FunFam | Pectinesterase | 63 | 226 | - | - | |
| Cco09g0143 | 588 | Pfam | Plant invertase/pectin methylesterase inhibitor | 66 | 221 | IPR006501 | GO:0004857(InterPro) | |
| Cco09g0143 | 588 | MobiDBLite | consensus disorder prediction | 1 | 25 | - | - | |
| Cco09g0143 | 588 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 62 | 226 | IPR035513 | - | |
| Cco09g0143 | 588 | SMART | PMEI_2 | 62 | 221 | IPR006501 | GO:0004857(InterPro) | |
| Cco09g0143 | 588 | CDD | PMEI-like_3 | 69 | 226 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco07g1509 | Cco-Chr7:29142224 | Cco09g0143 | Cco-Chr9:1255122 | 1.70E-109 | dispersed | |
| Cco09g0143 | Cco-Chr9:1255122 | Cco09g0858 | Cco-Chr9:8087328 | 6.40E-176 | dispersed | |
| Cco04g1997 | Cco-Chr4:34147738 | Cco09g0143 | Cco-Chr9:1255122 | 2.80E-125 | transposed | |
| Cco07g1508 | Cco-Chr7:29131980 | Cco09g0143 | Cco-Chr9:1255122 | 3.10E-220 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0143 | K01051 | - | csv:101212388 | 1026.93 |