Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0147 ATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGTCCTCTCAGTTAACCCAGTGGAACGCAAATGGGGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACCGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCTTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGTAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCTGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCATGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCGTTGGATGGCAGTGTAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGACGGAGCAGTCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCGAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2142 44.68 MDWRWRELISLIILCILGWKPSCIQGTTDPTDASALRVLYTSLNSSSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQFTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQALDGSVSSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARTEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1310727 1315852 - CcPI632755_09g001470.1 Cco09g0147 186604

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0147 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Cco09g0147 713 CDD STKc_IRAK 415 684 - -
Cco09g0147 713 MobiDBLite consensus disorder prediction 238 284 - -
Cco09g0147 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 MobiDBLite consensus disorder prediction 260 284 - -
Cco09g0147 713 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Cco09g0147 713 Pfam Leucine Rich repeat 95 114 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cco09g0147 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
Cco09g0147 713 PANTHER LEUCINE RICH REPEAT KINASE 2 292 683 IPR051420 -
Cco09g0147 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0147 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cco09g0147 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Cco09g0147 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0147 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Cco09g0147 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Cco09g0147 713 MobiDBLite consensus disorder prediction 693 713 - -
Cco09g0147 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cco09g0147 713 SUPERFAMILY L domain-like 30 234 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0147 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0620 Cco-Chr8:16308947 Cco09g0147 Cco-Chr9:1310727 1.60E-136 dispersed
Cco09g0147 Cco-Chr9:1310727 Cco10g1720 Cco-Chr10:30746119 1.10E-89 dispersed
Cco07g1502 Cco-Chr7:29092005 Cco09g0147 Cco-Chr9:1310727 7.10E-197 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco01g1034 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 6.1e-85 312.4
Cco10g1720 . 1 726 Strubbelig Receptor Gene Family AT5G06820 53.7 6.5e-186 647.9
Cco02g0132 . 34 788 Strubbelig Receptor Gene Family AT4G03390 62.3 6.6e-205 711.1
Cco04g2060 . 17 752 Strubbelig Receptor Gene Family AT4G03390 54.2 2.8e-163 572.8
Cco09g0147 . 393 687 Strubbelig Receptor Gene Family AT4G03390 58.1 1.3e-91 334.7
Cco08g0620 . 20 682 Strubbelig Receptor Gene Family AT3G13065 53.9 1.7e-148 523.5
Cco08g0620 . 22 704 Strubbelig Receptor Gene Family AT1G78980 60.8 1.3e-196 683.3
Cco07g1502 . 145 829 Strubbelig Receptor Gene Family AT1G78980 51.0 2.6e-144 509.6
Cco07g1502 . 146 829 Strubbelig Receptor Gene Family AT1G53730 59.5 2.9e-194 675.6
Cco09g0147 . 1 712 Strubbelig Receptor Gene Family AT1G53730 60.5 6.4e-186 647.9
Cco01g1034 . 9 689 Strubbelig Receptor Gene Family AT1G53730 51.4 4.5e-147 518.8
Cco07g1502 . 146 824 Strubbelig Receptor Gene Family AT3G14350 56.1 4.5e-173 605.1
Cco09g0147 . 6 702 Strubbelig Receptor Gene Family AT3G14350 55.3 8.3e-167 584.3
Cco01g1034 . 201 711 Strubbelig Receptor Gene Family AT4G22130 68.3 2.5e-177 619.0
Cco07g1502 . 508 836 Strubbelig Receptor Gene Family AT4G22130 62.8 8.9e-119 424.5
Cco09g0147 . 391 704 Strubbelig Receptor Gene Family AT4G22130 64.9 1.7e-117 420.2
Cco02g0132 . 485 790 Strubbelig Receptor Gene Family AT4G22130 59.9 3.5e-107 386.0
Cco08g0620 . 357 704 Strubbelig Receptor Gene Family AT4G22130 52.4 9.3e-100 361.3
Cco04g2060 . 464 752 Strubbelig Receptor Gene Family AT4G22130 59.5 2.3e-98 356.7
Cco10g1720 . 387 709 Strubbelig Receptor Gene Family AT4G22130 52.0 5.5e-92 335.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87075 PF07714 PK_Tyr_Ser-Thr 1.40E-42 CL0016 Cco PK