Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0147 ATGGATTGGAGGTGGAGGGAGCTGATATCTCTCATCATTCTCTGCATTCTAGGGTGGAAGCCTAGCTGCATTCAAGGAACCACAGATCCAACAGATGCCTCTGCTTTAAGGGTTTTGTACACCAGTTTAAACTCGTCCTCTCAGTTAACCCAGTGGAACGCAAATGGGGATGATCCTTGTGGACAATCATGGAAGGGAATTACTTGCTCCGGCTCACGGGTTACCGAAATAAACTTATCTGGCCTTGGACTCAGTGGATCGCTCGGATACCAGCTTGGAAGTATGACATCGGTAACCAACCTGGATGTGAGTAGTAACAATTTTGGAGGCGAGATTGTCTACAACCTTCCACCTAATCTAAAAAGACTAAATCTTGCACGAAACAACTTCAATAAAGGCATTCCTTATTCCGTTTCTTTGATGACTTCTCTTCAATACTTAAATATCAGTCATAATCAGCTTCAGGATCCATTGAATGATGTGTATGGGCAGCTAACTTCCCTATCCACATTGGATCTATCTTTCAATGCTATGTCAGGTAACCTGCCTCAGAGTTTTAGCTCTCTTTCTAGCATCAGCACTATGTATTTGCAAAACAATCAGTTCACTGGCACAATTGATGTCCTTGCAACTCTACCTCTTAATAACCTGAATGTTGAAAATAACCGTTTCACTGGATGGATCCCTGAACAACTGAAAAACATCAATCTGCAGACAAATGGCAACTCTTGGAACTCTGGTCCTGCACCCCCTCCTCCACCTGGTACACCCCCAGCCACCAGAAGAAACCGAAATCAACATTCAGGTGGCAGTCCATCAAATGGTGGTTCTAGTGAAGGTCAGAAATCAGGAATTAGTGGTGGTGGCATTGCAGGGATTATCATCTCCGTGCTCGTCGTTGGAGCTGTAGTAGCATTCTTCCTCGTCAAGAGGAGATCCAAGAGATCATCTACAGATATTGAAAAGCTCGACAATCAACCCCTGCAACCTCTTAAAGTGACTGCAGCACAAGAAACAAAGTCAGAAGAGACTTCCTCCACATTTTATCCAACATCATTTGACACTTCTGCTGCAATAAATCTTAAACCCCCACCTATCGATCGTCATAAATCATTTGATGAAGACGACTTCTCAAAACGAGCTGCAGTCAAGAAGGCTAGTGCTGCAGCTCCCATTAATGTAAAGTCATATTCCATAGCAGACCTTCAAATTGCTACAGGCAGCTTCAATGTTGAAAATCTTCTTGGTGAGGGATCATTTGGACGTGTATATCGGGCTGAGTTTGACGACGGGAAGGTTCTTGCCGTGAAAAAGATAAATTCATCTGCACTACCTAGGGAATTATCTGAAGATTTCACTGACATTGTTTCTAAAGTCTCCCAGTTACACCATCCCAATATAACTGAACTCGTGGGTTATTGCTTAGAGCATGGGCAGCATTTGCTTGTGTATGAGTTCCACAAAAATGGTTCGCTTTACGACTTATTACATCTATCAGATGAATACAACAAACCTCTGATATGGAACTCACGCATTAAGATTGCTTTGGGAACAGCGCGAGCATTGGAGTATCTTCATGAAGTGTGCTCCCCATCTATTGTTCATAGAAACGTCAAGTCTGCTAACATATTGTTAGATGCCGAACTCAGCCCCCACCTTTCTGACTCTGGACTGGAAAGCTTTGTACCAAATGCAGATCAGGCGTTGGATGGCAGTGTAAGTTCAGGATATGCTGCCCCGGAAGTTACCATGTCCGGTCAATATACTCTGCAAAGTGACGTCTACAGTTTTGGAGTAGTCATGTTGGAACTGCTGACTGGACGCAAACCATTCGACAGTTCAAGGGCGAGGACGGAGCAGTCTTTGGTTCGATGGGCAACACCTCAGCTTCATGACATTGATGCTTTGACCAAGATGGTTGATCCCGAACTCAAAGGCCTTTACCCCGTTAAATCTCTCTCCCGATTTGCAGATGTGATTGCACTTTGCGTTCAGACGGAACCTGAGTTCAGACCTCCAATGTCGGAGGTGGTCGAAGCGTTGGTCCGTTTGGTGCAGCGAGCGAACATGAGTAAGAGAACATATGGAAATGATAATGCAACATCTCCGAGAGGGGAGATGGGTGGGGAGGACACGCCATAA 2142 44.68 MDWRWRELISLIILCILGWKPSCIQGTTDPTDASALRVLYTSLNSSSQLTQWNANGDDPCGQSWKGITCSGSRVTEINLSGLGLSGSLGYQLGSMTSVTNLDVSSNNFGGEIVYNLPPNLKRLNLARNNFNKGIPYSVSLMTSLQYLNISHNQLQDPLNDVYGQLTSLSTLDLSFNAMSGNLPQSFSSLSSISTMYLQNNQFTGTIDVLATLPLNNLNVENNRFTGWIPEQLKNINLQTNGNSWNSGPAPPPPPGTPPATRRNRNQHSGGSPSNGGSSEGQKSGISGGGIAGIIISVLVVGAVVAFFLVKRRSKRSSTDIEKLDNQPLQPLKVTAAQETKSEETSSTFYPTSFDTSAAINLKPPPIDRHKSFDEDDFSKRAAVKKASAAAPINVKSYSIADLQIATGSFNVENLLGEGSFGRVYRAEFDDGKVLAVKKINSSALPRELSEDFTDIVSKVSQLHHPNITELVGYCLEHGQHLLVYEFHKNGSLYDLLHLSDEYNKPLIWNSRIKIALGTARALEYLHEVCSPSIVHRNVKSANILLDAELSPHLSDSGLESFVPNADQALDGSVSSGYAAPEVTMSGQYTLQSDVYSFGVVMLELLTGRKPFDSSRARTEQSLVRWATPQLHDIDALTKMVDPELKGLYPVKSLSRFADVIALCVQTEPEFRPPMSEVVEALVRLVQRANMSKRTYGNDNATSPRGEMGGEDTP 713
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1310727 1315852 - CcPI632755_09g001470.1 Cco09g0147 186604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0147 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 29 255 - -
Cco09g0147 713 CDD STKc_IRAK 415 684 - -
Cco09g0147 713 MobiDBLite consensus disorder prediction 238 284 - -
Cco09g0147 713 Pfam Leucine Rich Repeat 167 189 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 MobiDBLite consensus disorder prediction 260 284 - -
Cco09g0147 713 Gene3D Ribonuclease Inhibitor 29 256 IPR032675 -
Cco09g0147 713 Pfam Leucine Rich repeat 95 114 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 Pfam Leucine Rich repeat 142 156 IPR001611 GO:0005515(InterPro)
Cco09g0147 713 Gene3D Transferase(Phosphotransferase) domain 1 488 703 - -
Cco09g0147 713 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 373 486 - -
Cco09g0147 713 PANTHER LEUCINE RICH REPEAT KINASE 2 292 683 IPR051420 -
Cco09g0147 713 ProSiteProfiles Protein kinase domain profile. 409 684 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco09g0147 713 ProSitePatterns Protein kinases ATP-binding region signature. 415 438 IPR017441 GO:0005524(InterPro)
Cco09g0147 713 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 487 695 - -
Cco09g0147 713 Pfam Protein tyrosine and serine/threonine kinase 411 681 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco09g0147 713 SUPERFAMILY Protein kinase-like (PK-like) 392 681 IPR011009 -
Cco09g0147 713 Gene3D Phosphorylase Kinase; domain 1 372 486 - -
Cco09g0147 713 MobiDBLite consensus disorder prediction 693 713 - -
Cco09g0147 713 Pfam Leucine rich repeat N-terminal domain 30 70 IPR013210 -
Cco09g0147 713 SUPERFAMILY L domain-like 30 234 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0620 Cco-Chr8:16308947 Cco09g0147 Cco-Chr9:1310727 1.60E-136 dispersed
Cco09g0147 Cco-Chr9:1310727 Cco10g1720 Cco-Chr10:30746119 1.10E-89 dispersed
Cco07g1502 Cco-Chr7:29092005 Cco09g0147 Cco-Chr9:1310727 7.10E-197 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
87075 PF07714 PK_Tyr_Ser-Thr 1.40E-42 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0147 - - - 0.0