Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco09g0155 | ATGACGTCTCGCGGTTCCTCCGCTTCTGCCAATGGCCTATTACCGCTTACCGTTTCCACGTCCGGCCGGCATCACGATGTTGAGTCTGGGCTCTCCTCCAGCAAAAGCATTGACGAGGAGGAAGAAGAGGCTATATCGGATCCCTTCGACATCGACAATACCAAAAATGTTCCTCTCGAGATACTCAAGCGATGGAGGCAAGCTGCATTGGTGCTTAATGCATCTCGGAGATTTCGATATACTTTGGACTTAAAAAAGGAGGAAGAGAAAGAACAAAGAAGACGGATGATTAGAGCCCATGCACAAGTTATAAGGGCAGCACTGCTTTTCAAATTGGCAGGGGAACAACAAATTGGTTCATCAGTATCACCTCCAATGTCAAGTGGTGACTATTCCATTAGTTTAGAACAGCTTGCTTCATTGACTCGTGATCAAAACTTGTCTTCTCTACAACAGTATGGAGGAGTTAAAGGCTTATCAAATTTATTGAAAACAAGTACCGAGAAAGGAATATTGGGAGATGAAACTGATCTACTCAAAAGAAGAAATGCATTTGGATCAAATACATATCCACGTAAAAAAGGACGGAGCTTCTTGGTACAAATTAGTTCTCCATTTGTTTCTCCTTCTTTTTGTTGTCGTCGTCGTCGTTGTCTTGTGGTGGCAACATTCTCACCGTTCTATGTTTGGCAGAGATTTCTTTGGGAAGCTTGGCAAGATTTAACCCTAATCATCTTGATTATAGCTGCAGTGGCATCATTGGCTTTGGGGATTAAAACAGAGGGTGTAGAGGAAGGATGGTATGATGGAGGAAGTATTGCCTTTGCTGTATTTCTTGTCATAATAGTCACAGCGGTTAGTGATTATCGACAGTCTCTTCAGTTTCAGAACTTAAATGAGGAAAAACAGAACATACAAGTAGAGATCTTGAGGGATGGTAGAACTTTAAAGGTCTCAATATTTGACCTTGTTGTTGGGGATGTTGTACCTCTTAAAATTGGAGATCAGATCCCTGCTGATGGAATATTGATCACTGGTCATTCACTTGCCATAGATGAATCTAGCATGACAGGCGAAAGCAAGATTGTTCGCAAGGATCAGAAGACGCCCTTTTTGATGTCTGGTTGTAAGGTTGCAGATGGAGTTGGTACCATGATGGTAACTGCTGTTGGAATCAATACTGAATGGGGATTGTTGATGGCAAGTATCTCGGAGGATACTGGGGAAGAAACTCCCTTGCAGGTCCGTTTGAATGGAGTTGCAACTTTCATAGGCATAGTTGGGCTTGTGGTTGCAGTTTCTGTGCTAGCCGTCCTTTTGGGCAGATACTTCACGGGAAATACACATGATGCAAATGGGAACGTTGAATTTCAGCGTGGGCAAACGAGTCTAGGTGATGCTGTAGATGGAGTTATTAAAATCGTTACTGTTGCTGTTACTATTGTGGTTGTTGCAGTGCCCGAAGGACTTCCTTTGGCTGTCACCCTAACATTAGCATACTCCATGAGGAAAATGATGGCTGATAAAGCATTGGTTCGTAGGCTGTCTGCTTGCGAAACTATGGGCTCTGCAACAACAATATGTAGTGATAAGACTGGAACGTTGACTTTAAATCAGATGACTGTGGTCGAGGCATGTGTTGGAAAGAAAATGATTAATCCGCCAGATGATCCACTGCAGTTGCATTCATTGGTACTCACTCTGCTACATGAGGGCATTGCTCAGAACAGCACGGGCAATGTTTTTGTGGCTAAGGATGGTGGAGGTATAGAGGTCTCTGGATCTCCTACAGAAAAGGCTATTTTATCTTGGGCTGTAAAGCTGGGAATGAAGTTTGATGTTGCCAAATCAGAGTCCAAAATTCTCCATGTTGTCCCTTTCAATTCAGAAAAGAAGCGAGGTGGTGTTGCAATACAGCGGGCCAACTCAGAAGTTTGCATACACTGGAAAGGAGCGGCAGAGATGGTGTTATCTTCATGTACAAAGTATGTGGACTTGAATGGTGAAGTGCACTCAATAGAGGACAATGAGGATTATTTTAAGGCAGCTATTAGTGACATGGCTGCAAGTAGTTTGCGTTGTGTTGCCATTGCATATAGATCATATGAATTGGAGAAGATTCCAATAGATGAACAACGTTTGGATCAATGGGATTTGCCTGCTGATGATCTTGTTTTGCTTGCAATTATTGGTATAAAGGATCCTTGTCGCAATGGTGTTAAAGAGGCTGTTAAAGTGTGCACAGATGCAGGTGTCAAGGTGCGCATGGTCACTGGAGACAATATACAGACTGCAAAAGCTATAGCAGTAGAGTGTGGAATACTAAACGCAATTGAAGATGCTTCAGAGCCTACAGTAATTGAAGGAAAAACATTCCGTGTATTGTCTGAGAAGGAAAGAGAACAAGTTGCCCCAAAAATAACGGTGATGGGGAGGTCTTCACCTAATGACAAGCTGTTGCTTGTTCAAGCATTAAGAAAGGGAGGGGAAGTTGTTGCTGTAACTGGAGATGGGACTAATGATGCCCCTGCACTCCATGAGGCAGATATCGGTCTTTCTATGGGCATTCAAGGTACTGAAGTTGCTAAAGAGAGTTCTGATATTGTTATCTTGGACGATAACTTTGCTTCAGTTGTAAAGGTTGTCAGGTGGGGGCGTTCTGTGTATGCAAACATTCAAAAGTTCATCCAGTTTCAGCTCACTGTAAATGTTGCCGCTCTTGTGATCAATGTTGTTGCAGCTGTGTCTTCCGGTGATGTTCCTTTAAATACCGTTCAGCTTCTTTGGGTTAACCTGATCATGGATACACTTGGTGCTCTAGCATTAGCCACTGAACCACCAACAGACCACCTGATGCATCGGTCACCTGTTGGGCGAAGGGAACCCCTTATAACGAATATTATGTGGAGGAATTTGATTGTACAGGCTTTGTATCAAGTCGCTGTACTTCTTGTCCTCAACTTCTATGCCATTGATATTCTTCAATTGAACAATGATAGCAAGGAGCATGCCTTTAATGTGAAGAATACAGTGGTTTTCAATGCATTTGTCCTCTGCCAAATATTCAATGAATTTAATGCTCGAAAACCAGATGAAATGAACGTGTTCAGTGGAGTGACGAAAAATTACCTCTTTATGGGAATAGTTGGAACAACGTTCGTGCTTCAGATTCTCATCGTAGAATTTGCTGGAAAATTTACTTCAACAGTAAAACTTGATGGGAAACAATGGGTTATATGCTTCGCTGTTGCCCTTGTGAGTTGGCCGCTGGCGGTTGTTGGCAAACTGATTCCAGTTCCGGAGACCCCATTGGCTAAATACTTCACAAAGCAAGTTCAACGGTGCAGAAGGTCACGTGGTGCTTAA | 3366 | 42.9 | MTSRGSSASANGLLPLTVSTSGRHHDVESGLSSSKSIDEEEEEAISDPFDIDNTKNVPLEILKRWRQAALVLNASRRFRYTLDLKKEEEKEQRRRMIRAHAQVIRAALLFKLAGEQQIGSSVSPPMSSGDYSISLEQLASLTRDQNLSSLQQYGGVKGLSNLLKTSTEKGILGDETDLLKRRNAFGSNTYPRKKGRSFLVQISSPFVSPSFCCRRRRCLVVATFSPFYVWQRFLWEAWQDLTLIILIIAAVASLALGIKTEGVEEGWYDGGSIAFAVFLVIIVTAVSDYRQSLQFQNLNEEKQNIQVEILRDGRTLKVSIFDLVVGDVVPLKIGDQIPADGILITGHSLAIDESSMTGESKIVRKDQKTPFLMSGCKVADGVGTMMVTAVGINTEWGLLMASISEDTGEETPLQVRLNGVATFIGIVGLVVAVSVLAVLLGRYFTGNTHDANGNVEFQRGQTSLGDAVDGVIKIVTVAVTIVVVAVPEGLPLAVTLTLAYSMRKMMADKALVRRLSACETMGSATTICSDKTGTLTLNQMTVVEACVGKKMINPPDDPLQLHSLVLTLLHEGIAQNSTGNVFVAKDGGGIEVSGSPTEKAILSWAVKLGMKFDVAKSESKILHVVPFNSEKKRGGVAIQRANSEVCIHWKGAAEMVLSSCTKYVDLNGEVHSIEDNEDYFKAAISDMAASSLRCVAIAYRSYELEKIPIDEQRLDQWDLPADDLVLLAIIGIKDPCRNGVKEAVKVCTDAGVKVRMVTGDNIQTAKAIAVECGILNAIEDASEPTVIEGKTFRVLSEKEREQVAPKITVMGRSSPNDKLLLVQALRKGGEVVAVTGDGTNDAPALHEADIGLSMGIQGTEVAKESSDIVILDDNFASVVKVVRWGRSVYANIQKFIQFQLTVNVAALVINVVAAVSSGDVPLNTVQLLWVNLIMDTLGALALATEPPTDHLMHRSPVGRREPLITNIMWRNLIVQALYQVAVLLVLNFYAIDILQLNNDSKEHAFNVKNTVVFNAFVLCQIFNEFNARKPDEMNVFSGVTKNYLFMGIVGTTFVLQILIVEFAGKFTSTVKLDGKQWVICFAVALVSWPLAVVGKLIPVPETPLAKYFTKQVQRCRRSRGA | 1121 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 9 | 1387175 | 1403657 | - | CcPI632755_09g001550.1 | Cco09g0155 | 186612 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco09g0155 | 1121 | Pfam | Cation transporting ATPase, C-terminus | 920 | 1096 | IPR006068 | - | |
| Cco09g0155 | 1121 | SUPERFAMILY | Metal cation-transporting ATPase, ATP-binding domain N | 535 | 732 | IPR023299 | GO:0000166(InterPro) | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 283 | 404 | - | - | |
| Cco09g0155 | 1121 | SUPERFAMILY | Calcium ATPase, transduction domain A | 305 | 401 | IPR008250 | - | |
| Cco09g0155 | 1121 | Pfam | Cation transport ATPase (P-type) | 584 | 663 | - | - | |
| Cco09g0155 | 1121 | PRINTS | Sodium/potassium-transporting ATPase signature | 647 | 665 | - | - | |
| Cco09g0155 | 1121 | PRINTS | Sodium/potassium-transporting ATPase signature | 521 | 542 | - | - | |
| Cco09g0155 | 1121 | PRINTS | Sodium/potassium-transporting ATPase signature | 907 | 928 | - | - | |
| Cco09g0155 | 1121 | PRINTS | Sodium/potassium-transporting ATPase signature | 271 | 291 | - | - | |
| Cco09g0155 | 1121 | MobiDBLite | consensus disorder prediction | 1 | 49 | - | - | |
| Cco09g0155 | 1121 | Pfam | Cation transporter/ATPase, N-terminus | 153 | 207 | IPR004014 | - | |
| Cco09g0155 | 1121 | Gene3D | - | 236 | 542 | - | - | |
| Cco09g0155 | 1121 | Gene3D | - | 59 | 112 | - | - | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 236 | 293 | - | - | |
| Cco09g0155 | 1121 | NCBIfam | calcium-translocating P-type ATPase, PMCA-type | 232 | 1099 | IPR006408 | GO:0005388(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0070588(InterPro) | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 57 | 113 | - | - | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 729 | 880 | - | - | |
| Cco09g0155 | 1121 | Gene3D | - | 283 | 379 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 859 | 871 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 835 | 854 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 352 | 366 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 528 | 542 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 728 | 739 | - | - | |
| Cco09g0155 | 1121 | PRINTS | P-type cation-transporting ATPase superfamily signature | 750 | 760 | - | - | |
| Cco09g0155 | 1121 | Pfam | E1-E2 ATPase | 304 | 506 | - | - | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 852 | 1101 | - | - | |
| Cco09g0155 | 1121 | SFLD | Haloacid Dehalogenase | 510 | 887 | - | - | |
| Cco09g0155 | 1121 | CDD | P-type_ATPase_Ca_PMCA-like | 178 | 968 | - | - | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase | 538 | 735 | - | - | |
| Cco09g0155 | 1121 | NCBIfam | HAD-IC family P-type ATPase | 802 | 915 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0155 | 1121 | NCBIfam | HAD-IC family P-type ATPase | 468 | 551 | IPR001757 | GO:0005215(InterPro)|GO:0005524(InterPro)|GO:0016020(InterPro)|GO:0016887(InterPro) | |
| Cco09g0155 | 1121 | Gene3D | - | 543 | 735 | IPR023299 | GO:0000166(InterPro) | |
| Cco09g0155 | 1121 | ProSitePatterns | E1-E2 ATPases phosphorylation site. | 530 | 536 | IPR018303 | - | |
| Cco09g0155 | 1121 | MobiDBLite | consensus disorder prediction | 1 | 27 | - | - | |
| Cco09g0155 | 1121 | Gene3D | - | 847 | 1101 | - | - | |
| Cco09g0155 | 1121 | PANTHER | CATION TRANSPORTING ATPASE | 116 | 1099 | - | GO:0005388(PANTHER)|GO:0005887(PANTHER)|GO:0019829(PANTHER)|GO:0043231(PANTHER) | |
| Cco09g0155 | 1121 | Pfam | Ca2+-ATPase N terminal autoinhibitory domain | 47 | 89 | IPR024750 | GO:0005516(InterPro) | |
| Cco09g0155 | 1121 | FunFam | Calcium-transporting ATPase 9 plasma membrane-type | 382 | 552 | - | - | |
| Cco09g0155 | 1121 | SUPERFAMILY | Calcium ATPase, transmembrane domain M | 230 | 1099 | IPR023298 | - | |
| Cco09g0155 | 1121 | SFLD | p-type atpase | 510 | 887 | IPR044492 | - | |
| Cco09g0155 | 1121 | SUPERFAMILY | HAD-like | 526 | 940 | IPR036412 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco09g0071 | Cco-Chr9:617400 | Cco09g0155 | Cco-Chr9:1387175 | 1.20E-11 | dispersed | |
| Cco09g0155 | Cco-Chr9:1387175 | Cco11g1185 | Cco-Chr11:23152968 | 0.00E+00 | dispersed | |
| Cco09g0155 | Cco-Chr9:1387175 | Cco09g0712 | Cco-Chr9:6483548 | 1.00E-283 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco09g0155 | K01537 | - | csv:101214801 | 1918.66 |