Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0161 ATGGCAGAGATTGAAGCGTCTAGGGATAACGGAAATGATTGTAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGGTATTAAGCGAAGATCGGAGAGAAGAAAATGGGAATTTTCAGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCCTTCATCGTGTTGCGGATTTCGTGTTTGTCTGTTGGATTATCCACTCTCTTTGATGTGAAATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCTGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAATTTTACTCCTTCGTCCTCCTTTCTACAGGGTATCCAATGGCTGACACTAACGTTAGGTTTGAATCAAATCTGGATAAAATGGATTCAAAACTCTTTACCTAA 1341 44.67 MAEIEASRDNGNDCNSKDLFVDAELEGAFLSLEENWRMEMGDTLKDGIKRRSERRKWEFSARLSLVSRTFSLLSSLRAQSAVDPNWFRSHLQPSPSRGEIIHLKSNVIVDRLLFKATLHQNKEISFIVLRISCLSVGLSTLFDVKWTVFMRAMDGCILAMHSIRCTRNREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEFYSFVLLSTGYPMADTNVRFESNLDKMDSKLFT 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1435788 1445532 + CcPI632755_09g001610.1 Cco09g0161 186618
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0161 446 PANTHER GATA TRANSCRIPTION FACTOR 28 174 403 IPR045280 GO:0006355(InterPro)
Cco09g0161 446 SMART GATA_3 336 389 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 Pfam GATA zinc finger 342 378 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 CDD ZnF_GATA 342 397 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 ProSitePatterns GATA-type zinc finger domain. 342 369 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 SMART tify_2 189 224 IPR010399 -
Cco09g0161 446 ProSiteProfiles Tify domain profile. 189 224 IPR010399 -
Cco09g0161 446 ProSiteProfiles CCT domain profile. 266 308 IPR010402 GO:0005515(InterPro)
Cco09g0161 446 ProSiteProfiles GATA-type zinc finger domain profile. 336 397 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 Gene3D - 332 400 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco09g0161 446 Pfam CCT motif 266 308 IPR010402 GO:0005515(InterPro)
Cco09g0161 446 Pfam tify domain 195 223 IPR010399 -
Cco09g0161 446 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 337 400 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1313 Cco-Chr8:24991858 Cco09g0161 Cco-Chr9:1435788 1.70E-45 dispersed
Cco09g0161 Cco-Chr9:1435788 Cco09g1803 Cco-Chr9:30934741 3.80E-56 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59885 PF06203 CCT 1.50E-14 CL0281 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0161 - - - 0.0