Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco09g0161 | ATGGCAGAGATTGAAGCGTCTAGGGATAACGGAAATGATTGTAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGGTATTAAGCGAAGATCGGAGAGAAGAAAATGGGAATTTTCAGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCCTTCATCGTGTTGCGGATTTCGTGTTTGTCTGTTGGATTATCCACTCTCTTTGATGTGAAATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCTGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAATTTTACTCCTTCGTCCTCCTTTCTACAGGGTATCCAATGGCTGACACTAACGTTAGGTTTGAATCAAATCTGGATAAAATGGATTCAAAACTCTTTACCTAA | 1341 | 44.67 | MAEIEASRDNGNDCNSKDLFVDAELEGAFLSLEENWRMEMGDTLKDGIKRRSERRKWEFSARLSLVSRTFSLLSSLRAQSAVDPNWFRSHLQPSPSRGEIIHLKSNVIVDRLLFKATLHQNKEISFIVLRISCLSVGLSTLFDVKWTVFMRAMDGCILAMHSIRCTRNREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEFYSFVLLSTGYPMADTNVRFESNLDKMDSKLFT | 446 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
9 | 1435788 | 1445532 | + | CcPI632755_09g001610.1 | Cco09g0161 | 186618 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco09g0161 | 446 | PANTHER | GATA TRANSCRIPTION FACTOR 28 | 174 | 403 | IPR045280 | GO:0006355(InterPro) | |
Cco09g0161 | 446 | SMART | GATA_3 | 336 | 389 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0161 | 446 | Pfam | GATA zinc finger | 342 | 378 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0161 | 446 | CDD | ZnF_GATA | 342 | 397 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0161 | 446 | ProSitePatterns | GATA-type zinc finger domain. | 342 | 369 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0161 | 446 | SMART | tify_2 | 189 | 224 | IPR010399 | - | |
Cco09g0161 | 446 | ProSiteProfiles | Tify domain profile. | 189 | 224 | IPR010399 | - | |
Cco09g0161 | 446 | ProSiteProfiles | CCT domain profile. | 266 | 308 | IPR010402 | GO:0005515(InterPro) | |
Cco09g0161 | 446 | ProSiteProfiles | GATA-type zinc finger domain profile. | 336 | 397 | IPR000679 | GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco09g0161 | 446 | Gene3D | - | 332 | 400 | IPR013088 | GO:0006355(InterPro)|GO:0008270(InterPro) | |
Cco09g0161 | 446 | Pfam | CCT motif | 266 | 308 | IPR010402 | GO:0005515(InterPro) | |
Cco09g0161 | 446 | Pfam | tify domain | 195 | 223 | IPR010399 | - | |
Cco09g0161 | 446 | SUPERFAMILY | Glucocorticoid receptor-like (DNA-binding domain) | 337 | 400 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco08g1313 | Cco-Chr8:24991858 | Cco09g0161 | Cco-Chr9:1435788 | 1.70E-45 | dispersed | |
Cco09g0161 | Cco-Chr9:1435788 | Cco09g1803 | Cco-Chr9:30934741 | 3.80E-56 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59885 | PF06203 | CCT | 1.50E-14 | CL0281 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco09g0161 | - | - | - | 0.0 |