Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0161 ATGGCAGAGATTGAAGCGTCTAGGGATAACGGAAATGATTGTAATAGTAAGGATCTCTTTGTAGATGCAGAGCTCGAAGGTGCGTTTCTGAGTTTGGAAGAAAACTGGAGAATGGAAATGGGAGACACGCTGAAGGATGGTATTAAGCGAAGATCGGAGAGAAGAAAATGGGAATTTTCAGCACGTCTGTCGCTGGTTTCTAGAACCTTCTCTCTTCTCTCTTCTCTCCGAGCTCAATCCGCCGTTGATCCCAATTGGTTTAGATCGCATCTTCAACCCTCCCCTTCCCGAGGAGAGATCATCCACCTGAAAAGCAATGTGATCGTCGATCGTCTTCTTTTCAAAGCTACTTTGCATCAGAACAAGGAGATTTCCTTCATCGTGTTGCGGATTTCGTGTTTGTCTGTTGGATTATCCACTCTCTTTGATGTGAAATGGACAGTATTCATGCGAGCGATGGACGGATGCATATTAGCCATGCACAGCATTCGATGCACACGCAATCGGGAAGTTCAATCGGACCATGGCGATCTTGCAGAGAATCGTGGTGTAATGGTGGATCGAGGAGGCGATAACTGCGACCAGCTCACCCTGTCTTATCAGGGTCAAGTTTATGTTTTCGATTCTGTCTCGCCCGAAAAGGTTCAAGCTGTATTATTGTTATTGGGAGGTCGTGAAGTACCTTTGCGTGTTCCGTCAATCCCAATAACTAATCAACAAAATGATAGGCATCTCACTGATGAAGCGTTTAACCAGGCACTTGCCAATATCCCCCCACGTCTAAGTGTCCCTCAGAGATTAGCTTCTTTGATTAGATTTCGTGAAAAGCGAAAGGAGCGTAATTTTGACAAGAAAATTCGGTATACAGTTCGTAAAGAGGTAGCACTTAGGATGCAGCGTAATAAAGGCCAGTTCACATCTTCTAAACCCATCCATGAAGATTCATCATTGGCCATAGCGAGTTGGGAACCAAATGAGAGTTGGAGTAGTGATGGAAATGGATCCCAACAACAAGAAATTCTCTGCCGACATTGTGGTATTAGTGAGAAGTCAACACCAATGATGCGACGTGGACCTGATGGGCCAAGAACCCTTTGCAATGCTTGCGGACTCATGTGGGCAAACAAGGGAACTCTCCGGGACCTCTCTAAAGCTCCAAATCAGGGTGGACAAACTGCAACCTTCAATAGAAATGAGAATGCTGTGCAGAATGGAGATTCTGAGTCCAACCCAAAAGAATTTTACTCCTTCGTCCTCCTTTCTACAGGGTATCCAATGGCTGACACTAACGTTAGGTTTGAATCAAATCTGGATAAAATGGATTCAAAACTCTTTACCTAA 1341 44.67 MAEIEASRDNGNDCNSKDLFVDAELEGAFLSLEENWRMEMGDTLKDGIKRRSERRKWEFSARLSLVSRTFSLLSSLRAQSAVDPNWFRSHLQPSPSRGEIIHLKSNVIVDRLLFKATLHQNKEISFIVLRISCLSVGLSTLFDVKWTVFMRAMDGCILAMHSIRCTRNREVQSDHGDLAENRGVMVDRGGDNCDQLTLSYQGQVYVFDSVSPEKVQAVLLLLGGREVPLRVPSIPITNQQNDRHLTDEAFNQALANIPPRLSVPQRLASLIRFREKRKERNFDKKIRYTVRKEVALRMQRNKGQFTSSKPIHEDSSLAIASWEPNESWSSDGNGSQQQEILCRHCGISEKSTPMMRRGPDGPRTLCNACGLMWANKGTLRDLSKAPNQGGQTATFNRNENAVQNGDSESNPKEFYSFVLLSTGYPMADTNVRFESNLDKMDSKLFT 446
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1435788 1445532 + CcPI632755_09g001610.1 Cco09g0161 186618

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0161 446 PANTHER GATA TRANSCRIPTION FACTOR 28 174 403 IPR045280 GO:0006355(InterPro)
Cco09g0161 446 SMART GATA_3 336 389 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 Pfam GATA zinc finger 342 378 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 CDD ZnF_GATA 342 397 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 ProSitePatterns GATA-type zinc finger domain. 342 369 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 SMART tify_2 189 224 IPR010399 -
Cco09g0161 446 ProSiteProfiles Tify domain profile. 189 224 IPR010399 -
Cco09g0161 446 ProSiteProfiles CCT domain profile. 266 308 IPR010402 GO:0005515(InterPro)
Cco09g0161 446 ProSiteProfiles GATA-type zinc finger domain profile. 336 397 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Cco09g0161 446 Gene3D - 332 400 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Cco09g0161 446 Pfam CCT motif 266 308 IPR010402 GO:0005515(InterPro)
Cco09g0161 446 Pfam tify domain 195 223 IPR010399 -
Cco09g0161 446 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 337 400 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0161 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g1313 Cco-Chr8:24991858 Cco09g0161 Cco-Chr9:1435788 1.70E-45 dispersed
Cco09g0161 Cco-Chr9:1435788 Cco09g1803 Cco-Chr9:30934741 3.80E-56 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g1014 . . . . . . . . Cmo08g00819 Cmo17g00616 . . . . . Cpe12g00537 Cpe17g00409 . . . . . . . . . . . . . . . . . . Lsi02g02837 Csa07g02285 . Cme01g02738 . . . . . . . . . . . Cma08g00850 Cma17g00633 Car08g00734 Car17g00597 . . Bhi09g00226 . . . . . . Cla09g00147 Cam09g0160 Cec09g0164 Cco09g0161 Clacu09g0166 . Cre09g0151 . . Chy01g02108 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco08g1314 . 47 314 Tify Gene Family AT4G24470 51.0 6.5e-66 248.1
Cco09g1803 . 89 267 Tify Gene Family AT4G24470 60.2 9.4e-49 191.0
Cco09g0161 . 184 384 Tify Gene Family AT4G24470 52.5 1.4e-44 177.2
Cco09g0161 . 170 401 Tify Gene Family AT1G51600 63.4 2.5e-75 279.3
Cco09g1803 . 86 303 Tify Gene Family AT1G51600 54.9 1.7e-52 203.4
Cco08g1313 . 161 316 Tify Gene Family AT1G51600 57.7 2.8e-42 169.5
Cco09g0161 . 170 341 Tify Gene Family AT3G21175 61.0 3.2e-48 188.7
Cco06g0656 . 1 180 Tify Gene Family AT4G14713 53.6 1.2e-47 186.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008711 0 4 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 2 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59885 PF06203 CCT 1.50E-14 CL0281 Cco TF