Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0164 ATGCCGTCCGTCTATGGAGCTCGTGTGACCACTTTTGAAGACTCTGAGAAGGAAAGCGAGTATGGATATGTCCGGAAGGTATCTGGACCAGTCGTCGTGGCAGATGGCATGGGAGGTGCAGCCATGTATGAATTGGTTCGTGTTGGTCATGATAATCTGATTGGTGAAATCATTAGGTTAGAAGGAGATTCTGCCACTATTCAGGTTTATGAGGAAACTGCTGGTTTGATGGTGAATGACCCTGTCTTACGTACTCATAAACCTTTGTCAGTGGAGTTGGGACCTGGAATACTGGGAAATATATTTGATGGCATTCAGAGGCCATTGAAAACAATTGCAAAGAGATCAGGGGATGTCTACATTCCTCGTGGTGTCGCTGTCCCGGCACTGGACAAAGACATACTTTGGGATTTTCAACCCAAAAAACTAGGTGAGGGCGACTTATTGACAGGCGGAGACTTATATGCAACTGTCTTCGAGAATAGTCTAATGGAGCACCACATTGCACTTCCTCCTGATGCTATGGGGAAAATTACCTATATTGCAGCGCCTGGCCAATATTCATTGAAGGATACTGTTTTAGAGCTCGAGTTTCAAGGAGTTAAAAAGCAATTTACCATGCTTCAGACTTGGCCTGTGCGTACTCCTAGACCAGTTGCATCGAAGCTTGCAGCTGATACCCCTCTTTTGACCGGGCAGCGTGTTCTTGATGCACTCTTCCCTTCCGTTCTTGGTGGAACATGTGCCATTCCTGGAGCATTTGGTTGTGGAAAAACAGTCATTAGTCAAGCTCTCTCTAAATATTCAAATTCTGATACTGTGGTGTATGTTGGTTGTGGAGAGAGAGGAAATGAAATGGCTGAAGTTCTTATGGATTTTCCTCAATTGACAATGACATTGCCTGATGGGCGTGAAGAATCTGTCATGAAGCGTACCACTCTTGTGGCTAACACTTCTAATATGCCTGTGGCTGCTCGTGAAGCTTCAATTTATACTGGAATTACTTTGGCCGAATACTTCAGAGATATGGGATACAATGTAAGCATGATGGCAGATTCAACATCTCGATGGGCAGAAGCACTACGTGAAATATCTGGACGACTGGCAGAAATGCCAGCAGATAGTGGATATCCTGCCTACCTAGCGGCACGTTTAGCCTCTTTCTATGAGCGTGCTGGTAAAGTGAAGTGTCTTGGTGGGCCAGAACGAACTGGCAGTGTTACCATTGTCGGTGCAGTTTCTCCCCCTGGAGGAGATTTCTCTGATCCAGTGACGTCTGCCACCCTCAGTATTGTCCAGGTTTTCTGGGGTCTAGATAAGAAGCTTGCCCAGAGGAAGCACTTCCCTTCCGTGAATTGGCTAATTTCATACTCAAAATACTCTTCTGCGTTGGAATCTTTCTATGAGAAGTTTGATCCAGATTTTATTAACATCAGAACGAAGGCTCGTGAAGTCCTTCAGAGGGAAGATGACCTCAATGAAATTGTCCAACTTGTAGGAAAGGATGCCTTGGCTGAAGGAGATAAGATTACCTTAGAGACTGCAAAGCTTTTGAGGGAGGACTATCTTGCTCAGAATGCATTTACTCCGTATGATAAATTCTGCCCCTTCTACAAGTCGGTCTGGATGATGCGTAATATCATTCATTTCTACAATTTGGCTAATCAGGCAGTAGAGAGGGGAGCGGGTATGGATGGCCAAAAGATAACATACAGTTTGATTAAGCATCGGTTGGGAGATCTGTTCTATCGCCTGGTGTCTCAGAAGTTCGAGGATCCAGCTGAAGGAGAAGCTGCTCTCACTGAAAAATTTAAGAAGCTACATGAAGATCTGACAAATGGTTTCCGTGCTCTCGAGGACGAAACCCGGTAG 1872 45.14 MPSVYGARVTTFEDSEKESEYGYVRKVSGPVVVADGMGGAAMYELVRVGHDNLIGEIIRLEGDSATIQVYEETAGLMVNDPVLRTHKPLSVELGPGILGNIFDGIQRPLKTIAKRSGDVYIPRGVAVPALDKDILWDFQPKKLGEGDLLTGGDLYATVFENSLMEHHIALPPDAMGKITYIAAPGQYSLKDTVLELEFQGVKKQFTMLQTWPVRTPRPVASKLAADTPLLTGQRVLDALFPSVLGGTCAIPGAFGCGKTVISQALSKYSNSDTVVYVGCGERGNEMAEVLMDFPQLTMTLPDGREESVMKRTTLVANTSNMPVAAREASIYTGITLAEYFRDMGYNVSMMADSTSRWAEALREISGRLAEMPADSGYPAYLAARLASFYERAGKVKCLGGPERTGSVTIVGAVSPPGGDFSDPVTSATLSIVQVFWGLDKKLAQRKHFPSVNWLISYSKYSSALESFYEKFDPDFINIRTKAREVLQREDDLNEIVQLVGKDALAEGDKITLETAKLLREDYLAQNAFTPYDKFCPFYKSVWMMRNIIHFYNLANQAVERGAGMDGQKITYSLIKHRLGDLFYRLVSQKFEDPAEGEAALTEKFKKLHEDLTNGFRALEDETR 623
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
9 1463262 1469032 - CcPI632755_09g001640.1 Cco09g0164 186621

Annotation


Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0164 623 FunFam V-type proton ATPase catalytic subunit A 134 205 - -
Cco09g0164 623 Pfam ATP synthase alpha/beta family, beta-barrel domain 25 85 IPR004100 GO:0046034(InterPro)|GO:1902600(InterPro)
Cco09g0164 623 Gene3D - 134 205 - -
Cco09g0164 623 FunFam V-type proton ATPase catalytic subunit A 20 89 - -
Cco09g0164 623 Gene3D - 20 89 IPR023366 -
Cco09g0164 623 Pfam C-terminal domain of V and A type ATP synthase 466 561 - -
Cco09g0164 623 NCBIfam V-type ATPase subunit A 20 611 IPR005725 GO:0016887(InterPro)|GO:0033180(InterPro)|GO:0046961(InterPro)|GO:1902600(InterPro)
Cco09g0164 623 PANTHER V-TYPE PROTON ATPASE CATALYTIC SUBUNIT A 11 620 IPR022878 GO:0000325(PANTHER)|GO:0046034(InterPro)|GO:0046961(InterPro)|GO:0046961(PANTHER)|GO:1902600(PANTHER)
Cco09g0164 623 CDD ATP-synt_V_A-type_alpha_N 21 87 - -
Cco09g0164 623 SUPERFAMILY N-terminal domain of alpha and beta subunits of F1 ATP synthase 17 89 IPR036121 GO:0046034(InterPro)|GO:1902600(InterPro)
Cco09g0164 623 ProSitePatterns ATP synthase alpha and beta subunits signature. 449 458 IPR020003 GO:0005524(InterPro)
Cco09g0164 623 SUPERFAMILY C-terminal domain of alpha and beta subunits of F1 ATP synthase 471 553 - -
Cco09g0164 623 Gene3D - 459 615 IPR024034 -
Cco09g0164 623 Hamap V-type ATP synthase alpha chain [atpA]. 19 622 IPR022878 GO:0046034(InterPro)|GO:0046961(InterPro)
Cco09g0164 623 CDD V_A-ATPase_A 88 460 - -
Cco09g0164 623 FunFam V-type proton ATPase catalytic subunit A 459 612 - -
Cco09g0164 623 CDD ATP-synt_V_A-type_alpha_C 475 581 - -
Cco09g0164 623 FunFam V-type proton ATPase catalytic subunit A 192 457 - -
Cco09g0164 623 Pfam ATP synthase alpha/beta family, nucleotide-binding domain 232 458 IPR000194 GO:0005524(InterPro)
Cco09g0164 623 Pfam ATPsynthase alpha/beta subunit N-term extension 102 223 IPR031686 -
Cco09g0164 623 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 202 463 IPR027417 -
Cco09g0164 623 Gene3D - 91 457 IPR027417 -
       

Pathway


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0164 K02145 - - csv:101216234 1211.44
       

Syn-Families


Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco08g1842 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.0 0.0e+00 1625.1
Cco02g2230 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1343.6
Cco08g1644 . 1 802 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-296 1015.0
Cco02g0512 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 1.7e-291 998.8
Cco02g0512 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1231.5
Cco08g1644 . 1 807 Primary Pumps ATPases(2) AT2G21410 72.6 0.0e+00 1184.9
Cco02g2230 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 1.4e-298 1022.3
Cco02g0512 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1234.6
Cco08g1644 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.4 0.0e+00 1182.9
Cco02g2230 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 1.6e-297 1018.8
Cco08g1616 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco08g1617 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco11g1626 . 68 205 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco08g1616 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cco08g1617 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cco11g1626 . 42 205 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cco08g1616 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco08g1617 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco11g1626 . 43 205 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco11g1626 . 41 162 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cco08g1616 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cco08g1617 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cco08g1462 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cco05g1950 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 5.3e-70 261.2
Cco08g1616 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco08g1617 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco11g1626 . 68 205 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco05g1950 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.0 1.4e-72 269.6
Cco08g1462 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cco03g0186 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cco03g0186 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
Cco08g1842 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.0 0.0e+00 1625.1
Cco03g0186 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.4
Cco03g1782 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cco02g0431 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cco10g2018 . 92 199 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cco01g0853 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 3.2e-181 631.3
Cco09g2423 . 1020 1280 Primary Pumps ATPases(2) AT3G58730 82.4 1.0e-117 419.9
Cco10g1623 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.5e-206 715.7
Cco08g1616 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco08g1617 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco11g1626 . 43 205 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco02g0431 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cco05g1602 . 1 182 Primary Pumps ATPases(2) AT1G64200 74.1 1.1e-65 246.5
Cco02g0431 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cco02g2230 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1343.6
Cco08g1644 . 1 802 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-296 1015.0
Cco02g0512 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 1.7e-291 998.8
Cco10g1485 . 51 401 Primary Pumps ATPases(2) AT3G28715 92.0 6.3e-192 666.8
Cco05g1602 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.2e-91 330.5
Cco09g0164 . 1 623 Primary Pumps ATPases(2) AT1G78900 93.3 0.0e+00 1171.4
Cco02g0431 . 6 488 Primary Pumps ATPases(2) AT1G76030 96.1 4.5e-268 920.2
Cco02g0431 . 1 488 Primary Pumps ATPases(2) AT4G38510 95.9 2.9e-270 927.5
Cco02g0431 . 9 488 Primary Pumps ATPases(2) AT1G20260 95.8 9.4e-266 912.5
Cco01g0853 . 1 376 Primary Pumps ATPases(2) AT1G12840 83.2 3.2e-181 631.3
Cco09g2423 . 1020 1280 Primary Pumps ATPases(2) AT3G58730 82.4 1.0e-117 419.9
Cco05g1602 . 1 229 Primary Pumps ATPases(2) AT4G11150 77.4 7.2e-91 330.5
Cco05g1602 . 1 223 Primary Pumps ATPases(2) AT3G08560 69.0 3.9e-76 281.6
Cco05g1602 . 1 182 Primary Pumps ATPases(2) AT1G64200 74.1 1.1e-65 246.5
Cco03g1782 . 1 126 Primary Pumps ATPases(2) AT4G02620 84.1 3.8e-57 217.6
Cco10g2018 . 92 199 Primary Pumps ATPases(2) AT3G01390 80.6 3.8e-37 151.0
Cco10g1623 . 3 454 Primary Pumps ATPases(2) AT3G42050 79.6 1.5e-206 715.7
Cco02g2230 . 1 814 Primary Pumps ATPases(2) AT2G28520 81.6 0.0e+00 1343.6
Cco08g1644 . 1 802 Primary Pumps ATPases(2) AT2G28520 62.9 2.3e-296 1015.0
Cco02g0512 . 10 813 Primary Pumps ATPases(2) AT2G28520 62.7 1.7e-291 998.8
Cco02g0512 . 6 818 Primary Pumps ATPases(2) AT2G21410 75.6 0.0e+00 1231.5
Cco08g1644 . 1 807 Primary Pumps ATPases(2) AT2G21410 72.6 0.0e+00 1184.9
Cco02g2230 . 9 818 Primary Pumps ATPases(2) AT2G21410 62.6 1.4e-298 1022.3
Cco02g0512 . 8 818 Primary Pumps ATPases(2) AT4G39080 76.9 0.0e+00 1234.6
Cco08g1644 . 1 807 Primary Pumps ATPases(2) AT4G39080 73.4 0.0e+00 1182.9
Cco02g2230 . 9 818 Primary Pumps ATPases(2) AT4G39080 63.5 1.6e-297 1018.8
Cco08g1616 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco08g1617 . 28 165 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco11g1626 . 68 205 Primary Pumps ATPases(2) AT4G34720 99.3 1.4e-60 229.2
Cco11g1626 . 41 162 Primary Pumps ATPases(2) AT1G19910 99.2 5.4e-53 203.8
Cco08g1616 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cco08g1617 . 1 122 Primary Pumps ATPases(2) AT1G19910 98.4 1.2e-52 202.6
Cco08g1616 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco08g1617 . 28 165 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco11g1626 . 68 205 Primary Pumps ATPases(2) AT4G38920 99.3 4.0e-60 227.6
Cco08g1616 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cco08g1617 . 2 165 Primary Pumps ATPases(2) AT1G75630 80.8 1.4e-66 249.6
Cco11g1626 . 42 205 Primary Pumps ATPases(2) AT1G75630 80.3 3.1e-66 248.4
Cco08g1616 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco08g1617 . 3 165 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco11g1626 . 43 205 Primary Pumps ATPases(2) AT2G16510 99.4 4.4e-74 274.2
Cco05g1950 . 11 180 Primary Pumps ATPases(2) AT4G32530 77.0 1.4e-72 269.6
Cco08g1462 . 1 180 Primary Pumps ATPases(2) AT4G32530 73.3 1.5e-71 266.2
Cco08g1462 . 4 180 Primary Pumps ATPases(2) AT2G25610 84.2 3.1e-70 261.9
Cco05g1950 . 4 180 Primary Pumps ATPases(2) AT2G25610 81.9 5.3e-70 261.2
Cco10g1485 . 51 401 Primary Pumps ATPases(2) AT3G28710 94.3 5.5e-199 690.3
Cco10g1485 . 51 401 Primary Pumps ATPases(2) AT3G28715 92.0 6.3e-192 666.8
Cco03g0186 . 1 1065 Primary Pumps ATPases(2) AT1G07810 80.6 0.0e+00 1672.1
Cco03g0186 . 22 1046 Primary Pumps ATPases(2) AT4G00900 65.7 0.0e+00 1320.4
Cco08g1842 . 193 1190 Primary Pumps ATPases(2) AT1G10130 83.0 0.0e+00 1625.1
Cco03g0186 . 1 1065 Primary Pumps ATPases(2) AT1G07670 80.3 0.0e+00 1671.8
       

Syn-Orthogroups


Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006487 2 1 2 1 2 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 0 1 1 1 1 1 1 1 2 37