Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0173 ATGTGGAGGCTTAAGGTGGCAGACGGGGGAAATGACCCTTACATCTATTCTATGAACAACTTTGTAGGAAGGCAAATATGGGAATTCGATCCCAACGCAGGGACCCCTGAAGAGCGGGCCGAAGTCGAACGCGTTCGCAATGAGTTCACCAAAAATCGACTCAAAGGTTTTCCAAGTGCTGACTTGCTTTGGCGCCTCCAGCTTCTGAGAGAGAAGAATTTCAAACAAAGCATCCCACCGGTGAAGGTTGAAGAAGGAGAAGAAATGAGTTACGAAATGGCATGGGATGCAATGAGAAGAGGGGCGCATTTCTTAGCGGCCATACAAGCAAGCGATGGGCATTGGCCCAGCGAAACATCGGGCCCACTATTTTACTTGTGTCCCCTTCTTATTTGCATGTACATAATGGGCTTTATGGATACCGCATTCACTCCCGAGCACAAGAAAGAAATGATGCGTTATGTTTACAACCATCAGAATGAAGATGGTGGATGGGGGTTACACGTTGGTGGTCACAGTAACATGTTCTGCACTACCTTCAATTATATCTCTTTACGTTTACTTGGTGAAGGACCTGATGTTGAGCTAGTTTCCAGAGCCAGAGAATGGATTCGTGATCATGGCGGTGTCACATCCATACTTTCTTGGGGAAAGACGTGGCTCTCGATATTAAACGTGTTCGACTGGTCTGCAAGCAACCCCATGCCTCCTGAATATTGGATGTTTCCCACTTGGGTTCCCATTCATCCATCAAACATGATGTGCTACACTCGGATCACCTACATGCCCATGTCTTACCTATACGGGAAAAGGTTTCAAGCACCTCTAACGCCTCTTGTTTTACAATTAAGAGATGAACTTCACACTCAACCGTACGACCAAATTAATTGGAGAAAAGTTCGTCACATGTGTGCTACGGAAGACCTCTACTTTCCACATCCCATTGTCCAAGACTTGCTTTGGGACACTCTTTACTTGCTAAGTGAACCACTCATGACTCGGTGGCCTTTTAACAAATTGATTCGCCAAAAAGCCCTCAATGAGACTATGAGGCATATTCATTATGAGGATGAAAATAGTCGCTACATCACTATTGGTTGCGTCGAAAAGCCATTATGCATGCTAGCTTGTTGGGTTGAAGATCCTAATAGTGAGTATGTGAAGAAGCATTTTGCGAGAATTCCTGATTATTTATGGATGGCGGAAGATGGCATGAAAATGCAAAGTTTTGGTAGCCAATCATGGGATGCCGCTTTGGCAATGCAAGCGCTGCTTTCTTGTAATATCCCACATGAAATTGGGCCTGCTCTCAACACTGGCCATCAATTCATCAAGAACTCCCAGGTTAGAAACAATCCTCCTGGTGACTACAAAAGTATGTTCCGCTACATGTCTAAAGGATCTTGGACCTTCTCAGACTGTGATCATGGATGGCAAGTTTCTGATTGCACTGCCGAGAATTTGAAGTGTTGTCTACTGCTGTCGTTGCTACCACCTGAAATGGTTGGTGAGAAGATGGAACCTGAACGTTTTTACGATGCTGTTAATGTCATTCTGAACATGCAAAGCAAAAATGGGGGTTTACCAGCCTGGGAGCCAGCGTCAAGTTACTACTGGATGGAGTGGCTGAATCCAGTGGAATTTCTCGAAGATCTAATCATCGAGCACCAGCATGTGGAGTGCACCTCATCTGCGTTGCAAGCAATACTCTTATTTAGGAAACAATACCCAGGACATAGAAGGAAAGAGATCAACAATTTTATCAACAAGGCCGTTCAATTTCTTCAAGATATACAATTGCCTGATGGATCTTGGTATGGGAATTGGGGAATTTGCTATACTTATGGAACGTGGTTCGCACTCAAGGCATTGTCAATGGCGGGAAAGACCTATGAAAATTGTGAGGCGCTTCGGAAAGGAGCTAATTTTCTAATCAAGATACAGAATCAAGAAGGAGGGTTTGGAGAGAGCTACTTGTCATGTCCTTACAAGAGATATATACCGCTGGATGGGAAAAGATCAAATTTGGTGCAAACGGCATGGGGTTTGATGGGTTTGATAAGTGCTGGACAGGCAGATGTAGACCCCACTCCTATTCATCGTGCTGCCAAGTTGTTGATCAATTCTCAAACAGAAGATGGTGATTTTCCACAAGAGGAAATTACTGGAGAATTCTTCAAAAATTGTACTTTACATTTTGCAGCATTTAGAGAAGTATTTCCTGTGATGGCACTAGGAGAATATTGTAATAAGGACCCCGCCCGATGCTCATTCTCATCGTTGACCAGACCCCGGAGAGTGGCACAGTGGTTTGGAATTGGATCAGCCCAAACGCTCTCTATACGTTCCAATTACAGTAGTTTGTTCGAGTTTCACAAGGCCAATCACCCGTTGAAGAAAGCGCAACGAGTAGAAGAGGAAGAAGAAGGACGAAAACTAGAGCCCCAACCCTCTCTCTCAACTTCTCAGAGTTGCAGTAGTCCAAGGTGCATCATTAGTTCATCAGCATTTTTCCCAACTCCATGCTGGAGAACCTTAAATGCTGTTCAACTTAACCCGTCTCATCTCATTATGCACCGGCTTTTGTTTCGAGATTCAATTCTCGTCTCAAAGTTATCGGCTTTACGAGTCAGACCAGGCTTTAGAATTACGTGTTCTATAAACCGCTTTTCCATCATTTTCTGCCTTATTCCAGTTTCCGCGAACTCTGTTTTGTTTTTGGTTTTTTCTTCCTTTGCTTGGGAAATTTCTTTTCGTCCATTCCATCCACTTGACCGCCCCCGAATTTCCAAAATTCAGCGACCAGGGTCCGGGGGCGATTTGCCCCAGGGTGGCGAGTACAACCCTTATCCTATTGCGCGGAGGGTAAATTCCTCCCATACCGTTCTCATGGATGATGACATTGAAAATGCTAGCTTGGGGGTGTACCAAGACAGGCCAAGGACTTTCCCTGATATGCGTAGTAAAGTCAACACCCCATTGATATTTCGAATTATGATGGGGATAAATATTCGTGTTCTCTTAGTACTTCTTCTCTTTGCATTTGGAATAATATTCTACATTGGAGCAAGCACTTCCCCAATTATTGTGTTTGTCTTCTCAATTTGCATCGTCAGCTTCTGCTTTTCGATATATCTCACCAAATGGGTGCTCTCGAAAGATGAAGGGCCACAGGAGATGGCTCAGATTTCAGAGGCAATACGTGATGGGGCAGAAGGTTTCTTTAGGACTCAGTATAGTACCATCTCTAAAATGGCTATGTTACTTGCAGTAGTGATTCTTTGCATATACTTGTTTCGTAGTACTACTCCTCAACAAGAATCTTCCGGAATAGGGAGGTCAACAACTGCTTATATTACTGTTGCAGCATTTCTGTTAGGAGCCTTGTGTTCAGGTATTGCAGGGTATGTTGGAATGTGGGTTTCAGTTCGTGCAAATGTCAGGGTCTCTAGTGCTGCCAGACGGTCTGCAAGGGAGGCATTGCAGATTGCTGTCCGGGCTGGTGGTTTTTCTGCCATAGTTGTTGTTGGCATGGCTGTTATTGGTATAGCCATTCTGTATGCTGCATTTCATGTTTGGTTGGATGTGGGTTTGCCAGGTTCAACCAAGGTTACTGACTTGCCTCTTCTCCTTGTGGGTTATGGTTTTGGAGCTTCTTTTGTTGCCCTATTTGCTCAGTTGGGTGGTGGTATCTATACCAAAGCTGCTGATGTTGGGGCAGACCTTGTCGGAAAAGTTGAGCAGGGAATACCAGAAGATGACCCAAGAAATCCTGCTGTTATTGCAGATCTGGTTGGGGACAATGTGGGCGATTGTGCCGCTCGAGGTGCAGATCTCTTTGAAAGCATAGCTGCTGAAATTATTAGTGCCATGATACTTGGGGGAACAATGGCTGAACGTTGTAAAATTGAAGATCCATCTGGTTTCATTTTATTTCCGCTGGTAGTTCACTCCTTTGATCTGGTGATTTCATCAATTGGCATTCTCTCTATCAGGAGAGGTACTCGTGAATCTGGTGTTAAGGGTCCCATAGAGGATCCAATGACTATTCTGCAGAGAGGATACTCTGTCACTATCGTTCTAGCTGTTCTAACATTTGGCGTGTCTACCCGGTGGTTGCTTCATACTGAACAAGCACCTTCTGCATGGTTCAACTTTGCCTTGTGTGGCTTGGTTGGTATTATAACGGCTTACATTTTTGTCTGGATCACCAAATACTACACTGACTACAAGCATGAGCCCGTGCGTTCATTAGCACTTTCTAGCTCCACAGGCCATGGGACAAACATAATTGCTGGAGTCAGTTTGGGCCTAGAATCAACAGCACTTCCTGTTCTTGTTATTAGTTTTTCTATTGTTTCAGCTTTCTGGTTGGGTCGCACATCAGGACTCGTGGACGAAGCTGGAAATCCAACAGGTGGACTATTTGGTACTGCTGTAGCAACAATGGGAATGCTCAGCACTGCTGCCTATGTTCTCACAATGGATATGTTTGGGCCAATAGCTGATAATGCTGGTGGAATTGTTGAGATGAGTCAGCAGCCAGAAAGCGTTCGGGAGATTACTGATCTTCTTGATGCAGTAGGTAACACAACTAAAGCGACCACAAAAGGTTTTGCCATTGGCTCTGCAGCACTGGCATCCTTCTTACTTTTCAGTGCTTATATGGATGAGGTATCTGCATTTGCTCATGAACCTTTTAAACAGGTAGATATTGCAATTCCAGAAGTTTTCGTTGGTGGTTTGTTGGGTTCCATGCTTATTTTTCTCTTTAGTGCTTGGGCCTGCTCTGCTGTTGGCCGAACAGCCCAAGAGGTTGTAAAGGAAGTAAGAAGACAGTTCATTGAGAGGCCTGGTATTATGGATTATACCGAGAAACCTGAATATGGACGTTGCGTTGCTATTGTAGCATCAGCATCTTTAAGGGAGATGATTAAACCTGGTGCTTTGGCTATCATTTCTCCTATGGCAGTTGGCTTCCTGTTTAGAATATTGGGACACTACACTCGGCAGCCGCTTTTAGGGGCCAAGGTCGTTGCTGCGATGCTGATGTTTGCCACAGTCTCCGGTATTCTCATGGCACTTTTTCTGAACACAGCAGGGGGTGCCTGGGATAATGCCAAGAAGTATATAGAGACTGGGGTTCTTGGAGGTAAAGGTAGCGATTGTCATAAAGCTGCCGTAACTGGGGACACTGTAGGTGACCCATTCAAGGACACAGCAGGGCCTTCTCTTCACGTTCTCATTAAAATGCTCGCAACCATAACGCTGATATATGACATGGAATCTGAAGAACACCTTGTTGTTGAAAACCGAATTCTTCCTCAGCTTCCCGCAGTAATATTTGGAATGCTTGGTGCTTGCTTTGATGATTTCCCAAGTGGGAAAATAAAATATTTCAATCCTGAATACCCAAAAGAGAATGGTCGGCGTACAACGTGGCAGAGAATGGCAACGGTGGCGTTGAAAGCTGAAGCAGCAGAGCTCAGTGGCTGTGGCTAG 5502 44.73 MWRLKVADGGNDPYIYSMNNFVGRQIWEFDPNAGTPEERAEVERVRNEFTKNRLKGFPSADLLWRLQLLREKNFKQSIPPVKVEEGEEMSYEMAWDAMRRGAHFLAAIQASDGHWPSETSGPLFYLCPLLICMYIMGFMDTAFTPEHKKEMMRYVYNHQNEDGGWGLHVGGHSNMFCTTFNYISLRLLGEGPDVELVSRAREWIRDHGGVTSILSWGKTWLSILNVFDWSASNPMPPEYWMFPTWVPIHPSNMMCYTRITYMPMSYLYGKRFQAPLTPLVLQLRDELHTQPYDQINWRKVRHMCATEDLYFPHPIVQDLLWDTLYLLSEPLMTRWPFNKLIRQKALNETMRHIHYEDENSRYITIGCVEKPLCMLACWVEDPNSEYVKKHFARIPDYLWMAEDGMKMQSFGSQSWDAALAMQALLSCNIPHEIGPALNTGHQFIKNSQVRNNPPGDYKSMFRYMSKGSWTFSDCDHGWQVSDCTAENLKCCLLLSLLPPEMVGEKMEPERFYDAVNVILNMQSKNGGLPAWEPASSYYWMEWLNPVEFLEDLIIEHQHVECTSSALQAILLFRKQYPGHRRKEINNFINKAVQFLQDIQLPDGSWYGNWGICYTYGTWFALKALSMAGKTYENCEALRKGANFLIKIQNQEGGFGESYLSCPYKRYIPLDGKRSNLVQTAWGLMGLISAGQADVDPTPIHRAAKLLINSQTEDGDFPQEEITGEFFKNCTLHFAAFREVFPVMALGEYCNKDPARCSFSSLTRPRRVAQWFGIGSAQTLSIRSNYSSLFEFHKANHPLKKAQRVEEEEEGRKLEPQPSLSTSQSCSSPRCIISSSAFFPTPCWRTLNAVQLNPSHLIMHRLLFRDSILVSKLSALRVRPGFRITCSINRFSIIFCLIPVSANSVLFLVFSSFAWEISFRPFHPLDRPRISKIQRPGSGGDLPQGGEYNPYPIARRVNSSHTVLMDDDIENASLGVYQDRPRTFPDMRSKVNTPLIFRIMMGINIRVLLVLLLFAFGIIFYIGASTSPIIVFVFSICIVSFCFSIYLTKWVLSKDEGPQEMAQISEAIRDGAEGFFRTQYSTISKMAMLLAVVILCIYLFRSTTPQQESSGIGRSTTAYITVAAFLLGALCSGIAGYVGMWVSVRANVRVSSAARRSAREALQIAVRAGGFSAIVVVGMAVIGIAILYAAFHVWLDVGLPGSTKVTDLPLLLVGYGFGASFVALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAEIISAMILGGTMAERCKIEDPSGFILFPLVVHSFDLVISSIGILSIRRGTRESGVKGPIEDPMTILQRGYSVTIVLAVLTFGVSTRWLLHTEQAPSAWFNFALCGLVGIITAYIFVWITKYYTDYKHEPVRSLALSSSTGHGTNIIAGVSLGLESTALPVLVISFSIVSAFWLGRTSGLVDEAGNPTGGLFGTAVATMGMLSTAAYVLTMDMFGPIADNAGGIVEMSQQPESVREITDLLDAVGNTTKATTKGFAIGSAALASFLLFSAYMDEVSAFAHEPFKQVDIAIPEVFVGGLLGSMLIFLFSAWACSAVGRTAQEVVKEVRRQFIERPGIMDYTEKPEYGRCVAIVASASLREMIKPGALAIISPMAVGFLFRILGHYTRQPLLGAKVVAAMLMFATVSGILMALFLNTAGGAWDNAKKYIETGVLGGKGSDCHKAAVTGDTVGDPFKDTAGPSLHVLIKMLATITLIYDMESEEHLVVENRILPQLPAVIFGMLGACFDDFPSGKIKYFNPEYPKENGRRTTWQRMATVALKAEAAELSGCG 1833
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1568553 1591737 - CcPI632755_09g001730.1 Cco09g0173 186630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0173 1833 Pfam Inorganic H+ pyrophosphatase 1037 1758 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cco09g0173 1833 NCBIfam V-type H(+)-translocating pyrophosphatase 1031 1759 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cco09g0173 1833 Hamap Putative K(+)-stimulated pyrophosphate-energized sodium pump [hppA]. 1026 1764 IPR004131 GO:0004427(InterPro)|GO:0009678(InterPro)|GO:0016020(InterPro)|GO:1902600(InterPro)
Cco09g0173 1833 Gene3D - 119 411 - -
Cco09g0173 1833 Pfam Squalene-hopene cyclase C-terminal domain 414 749 IPR032696 -
Cco09g0173 1833 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 121 407 IPR008930 -
Cco09g0173 1833 MobiDBLite consensus disorder prediction 800 825 - -
Cco09g0173 1833 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 348 753 IPR008930 -
Cco09g0173 1833 CDD SQCY_1 98 748 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cco09g0173 1833 NCBIfam squalene/oxidosqualene cyclases 97 749 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cco09g0173 1833 Gene3D - 486 720 - -
Cco09g0173 1833 PANTHER TERPENE CYCLASE/MUTASE FAMILY MEMBER 1 751 IPR018333 GO:0005811(InterPro)|GO:0016104(PANTHER)|GO:0016104(InterPro)|GO:0016866(InterPro)|GO:0042300(PANTHER)
Cco09g0173 1833 Pfam Squalene-hopene cyclase N-terminal domain 100 356 IPR032697 -
Cco09g0173 1833 ProSitePatterns Terpene synthases signature. 602 616 IPR002365 GO:0016866(InterPro)
Cco09g0173 1833 SFLD Prenyltransferase Like 2 94 750 IPR018333 GO:0005811(InterPro)|GO:0016104(InterPro)|GO:0016866(InterPro)
Cco09g0173 1833 FunFam Terpene cyclase/mutase family member 386 755 - -
Cco09g0173 1833 MobiDBLite consensus disorder prediction 800 814 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1745 Cco-Chr2:30140178 Cco09g0173 Cco-Chr9:1568553 0.00E+00 dispersed
Cco06g1353 Cco-Chr6:24028856 Cco09g0173 Cco-Chr9:1568553 1.60E-115 dispersed
Cco06g2052 Cco-Chr6:30416147 Cco09g0173 Cco-Chr9:1568553 0.00E+00 dispersed
Cco09g0001 Cco-Chr9:4498 Cco09g0173 Cco-Chr9:1568553 2.2e-312 dispersed
Cco09g0173 Cco-Chr9:1568553 Cco09g2409 Cco-Chr9:38329248 3.10E-269 dispersed
Cco09g0173 Cco-Chr9:1568553 Cco09g0174 Cco-Chr9:1603260 1.20E-249 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0173 K23025 - csv:101216883 1513.82