Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0180 ATGGCGTGGTTCACCATTGGAAGCTTTCAAGATTCCTTGAGCTTCCGCTCTTGCAAGGCTTATCTTGCTGAGTTCATCTCCACCTTACTCTTTGTTTTCGCCGGTGTCGGCTCCGCCATTGCCTACAATAAAATAACATCGTCAGCAGCTCTAGATCCAGCAGGGCTAGTTGCGGTGGCGGTTTGCCATGGATTTGCTCTGTTTGTTGCAGTCTCCATCGGAGCTAACATCTCCGGTGGCCACGTCAACCCAGCGGTGACGTTCGGGCTTCTTCTTGGAGACCAAATCAGCCTTATTACCACCATTTTTTACTGGATCGCTCAGCTTCTTGGCTCCATTGTCGCCTGCTACCTTCTCAAATATGTCACCGGCGGCCTTGCGGTTCCGGTCCACAGCGTTGCCGCCGGCGTAGGAGCGGCGGAAGGGGTTGTGACGGAGATTGTAACCACCTTCGGTTTGGTTTACACTGTCTATGCGACGGCGGCAGACCCAAAGAAGGGATCTTTGGGCACAATTGCGCCGATCGCCATCGGTTTCATCGTGGGAGCAAACATCTTGGCGGCCGGACCGTTTTCCGGCGGGTCGATGAACCCGGCTCGATCTTTCGGCCCGGCGGTGGTCAGTGGCGACTTTCATGATAACTGGATTTACTGGGTTGGGCCGCTCGTTGGCGGTGGCTTAGCTGGGCTTATCTACTTTTACGCCTTTATGGCCTATGGGCCCAGCCCAATTCCAAATGATTTCTAA 747 54.22 MAWFTIGSFQDSLSFRSCKAYLAEFISTLLFVFAGVGSAIAYNKITSSAALDPAGLVAVAVCHGFALFVAVSIGANISGGHVNPAVTFGLLLGDQISLITTIFYWIAQLLGSIVACYLLKYVTGGLAVPVHSVAAGVGAAEGVVTEIVTTFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAGPFSGGSMNPARSFGPAVVSGDFHDNWIYWVGPLVGGGLAGLIYFYAFMAYGPSPIPNDF 248
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1649469 1650732 - CcPI632755_09g001800.1 Cco09g0180 186637
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0180 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Cco09g0180 248 PANTHER AQUAPORIN-8 5 238 IPR034294 GO:0006833(PANTHER)|GO:0015250(PANTHER)|GO:0016020(PANTHER)
Cco09g0180 248 SUPERFAMILY Aquaporin-like 15 242 IPR023271 -
Cco09g0180 248 NCBIfam MIP family channel protein 23 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 CDD MIP 19 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 FunFam Probable aquaporin TIP1-1 2 247 - -
Cco09g0180 248 PRINTS Major intrinsic protein family signature 178 200 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 PRINTS Major intrinsic protein family signature 145 163 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 PRINTS Major intrinsic protein family signature 215 235 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 Pfam Major intrinsic protein 15 232 IPR000425 GO:0015267(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro)
Cco09g0180 248 Gene3D Glycerol uptake facilitator protein. 2 240 IPR023271 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g0436 Cco-Chr1:4350792 Cco09g0180 Cco-Chr9:1649469 8.60E-98 dispersed
Cco01g0519 Cco-Chr1:5041315 Cco09g0180 Cco-Chr9:1649469 1.30E-48 dispersed
Cco08g1384 Cco-Chr8:25750245 Cco09g0180 Cco-Chr9:1649469 3.00E-66 dispersed
Cco09g0180 Cco-Chr9:1649469 Cco10g1977 Cco-Chr10:33302486 4.00E-71 dispersed
Cco09g0180 Cco-Chr9:1649469 Cco04g1150 Cco-Chr4:26865090 1.90E-76 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0180 K09873 - csv:101218611 449.514