Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0190 ATGGCCGTTGTCATGTCTGACGACCACCCCTCTCGCCGTCTTAAGATTCTTCCTTCTTCTCCGGCTCTCTCCCTCACTCTTGCTGGGGTTTTTGGGAATGCGGCGGCGATGGATGTGGAGTTCGACGCCCCGGCGAGGAGGGACGACAGCTACAGCGACAACTCTGAACCGGCGGGATCCAGGTCGGCGGAGGATTTCGGGGTCGACCCTGATGATGAAGATGAAGATAAATTACAGGGGAATACGAAGAAGAGGAAGAATCGTCATACTTTAGAGCAAATCAGAGAAATGGAAATGTTGTTTAAAGAATCACCTCATCCAGATGAGAAACAACGGCAACAACTCAGTCAGAAACTTGGTCTTTCTTGTAGGCAAATCAAGTTCTGGTTTCAGAATCGTAGAACTCAAATCAAGGCTATTCACGAGCGTCATGAAAACGCTTTATTGAAAGGAGAAATGGAGAAATTGCGAGAAGAAAACCAAGCTATAAGAGAAATGATCAGTAAATCTTCTTGCCCTAAATGTTGTTCTTCACCTAATTCCGTAGACCCAATTTTCACGAGCTCTGATCAACAACAACAACAACTAGTAGCTGAAATTGCTCGACTAAAAGCTGAGGTGGAGAGATTACGAACAGCTCTGGATAAATACGTACCGGCGGGGACATCATCGGGGGAGAACAACGAGGAAGGAATAGAGAGGAGGAGGAATTTGGAGAAATCGAAGAGTATTTTGGGGATGGAGAAAGCTAGGGTTATGATGATAGGGAAGCGGGCGATTGAGGAGGTGGTGAAAATGGGGGATTCCGATGAGCCGCTGTGGGTGAGAAGCGTGGAAACAGGGAGAGAACTACTGAATTACGATGTGTATATGAAGGAATTGGCGGCCGGAAATGAGCGAGGGAAGAGAGAAGTGGAAGCGTCGAGAGAAACCGGCGTGGTGTTCGTGGATCTCCATCGATTGGTTCAGAGCTTCATGGATGTGGTTCAATGGAAGGAAATGTTTCCGTCGATAATCTCCAAGGCGTCGACAATGGAGGTCGTCTGCAATGGCGACGGGACCAACAAGGACGGCGCAGTTCAACTGATGTATGCAGAGCTCCAAATGTTGACCCCAATCCTCCCTCCAAGAGAGATCTTTTTCATTCGAAGTTGCAAGCAACTAAGCTCCGATAAATGGGTCGTCGCCGATGTCTCCATCGACAAAGTCGGAGACCATATCGACTCATCTTCCTCTCGTTGTAGGAAACGCCCCTCTGGTTGCATCATCCAAGACACATCTGACGGTCATTGTAAGGTCACGTGGGTAGAGCACTGGGAATGCCACAAGATTGGACTTCACACCATATATCGAACCATTGTCAACAGTGGGTTGATATTCGGGGCGAGGCATTGGATGGCCACGCTACAAAGCCATTGTGAGTGGCAGGTTTTCTTCATGGCTACCAACGTTCCCATGAAGGATTCCACTGGAATCACTACTGTTGGTGGGAGAAAAAGTGTTCTTCGATTGGCTCAGAGAATGGCCTCTAGTATTTATCAAGCCATTGGTGCTTCAAGCAGCCATACATGGACCAAGATCCAGAGCAAAATAGGTGAAACCATACGGATTGCTTCTAGGAAGAACTTGAAAAACCCACAAGAACCTACTGGTTTGATCTTGTGTGCAGTTGCTTCTGTTTGGCTACCTGTTTCCCCTAAACTCTTGTTCGAATTCTTGATCGACGAATCTCGCCGACCCGAGTGGGATGTAATGCTAAGTGGTGGTCAAGTTGAAATGTTAGCAAACTTTGCCAAAGGACAGAAACGAGGCAATGCCGTAACTATCCAAGCAATAAAATCAGACGAAACCAACATGTGGATTCTACAAGATAGTCTAACGAACGAATACGAATCAACGGTCGTCTATGCTCAAGTTGACATGAATAGCATGAAATCTGTGATGGCCGGGTTCGACCTGAGCAATATCACGACGTTACCGACAGGCTTCTCGATCCTTCTAGATGGACTCCCTACAAGGCCATTGGTTATCAGTTCTAGCAAAGAGGAGAGGGAAACCGAAGGAGGCTCATTGCTAACAATAGCATCTCAAATCCTTGTTAGTCCCTCCCCAACCGCCGAAACGACGTCGCAGTCAGTTGATTATGTTAACAATATTATATCACATACATTAGAAAATATTAAAGCAAGCCTAAAAGGTGATGATGATTGA 2211 46.72 MAVVMSDDHPSRRLKILPSSPALSLTLAGVFGNAAAMDVEFDAPARRDDSYSDNSEPAGSRSAEDFGVDPDDEDEDKLQGNTKKRKNRHTLEQIREMEMLFKESPHPDEKQRQQLSQKLGLSCRQIKFWFQNRRTQIKAIHERHENALLKGEMEKLREENQAIREMISKSSCPKCCSSPNSVDPIFTSSDQQQQQLVAEIARLKAEVERLRTALDKYVPAGTSSGENNEEGIERRRNLEKSKSILGMEKARVMMIGKRAIEEVVKMGDSDEPLWVRSVETGRELLNYDVYMKELAAGNERGKREVEASRETGVVFVDLHRLVQSFMDVVQWKEMFPSIISKASTMEVVCNGDGTNKDGAVQLMYAELQMLTPILPPREIFFIRSCKQLSSDKWVVADVSIDKVGDHIDSSSSRCRKRPSGCIIQDTSDGHCKVTWVEHWECHKIGLHTIYRTIVNSGLIFGARHWMATLQSHCEWQVFFMATNVPMKDSTGITTVGGRKSVLRLAQRMASSIYQAIGASSSHTWTKIQSKIGETIRIASRKNLKNPQEPTGLILCAVASVWLPVSPKLLFEFLIDESRRPEWDVMLSGGQVEMLANFAKGQKRGNAVTIQAIKSDETNMWILQDSLTNEYESTVVYAQVDMNSMKSVMAGFDLSNITTLPTGFSILLDGLPTRPLVISSSKEERETEGGSLLTIASQILVSPSPTAETTSQSVDYVNNIISHTLENIKASLKGDDD 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1755239 1768278 + CcPI632755_09g001900.1 Cco09g0190 186647
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0190 736 ProSitePatterns 'Homeobox' domain signature. 115 138 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Cco09g0190 736 Gene3D - 253 476 IPR023393 -
Cco09g0190 736 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 73 732 IPR042160 -
Cco09g0190 736 SUPERFAMILY Bet v1-like 247 474 - -
Cco09g0190 736 SMART START_1 254 475 IPR002913 GO:0008289(InterPro)
Cco09g0190 736 FunFam Homeobox-leucine zipper protein HDG1 69 156 - -
Cco09g0190 736 SMART HOX_1 82 144 IPR001356 GO:0003677(InterPro)
Cco09g0190 736 CDD homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cco09g0190 736 Pfam Homeodomain 83 138 IPR001356 GO:0003677(InterPro)
Cco09g0190 736 Gene3D - 70 151 - -
Cco09g0190 736 Pfam START domain 258 474 IPR002913 GO:0008289(InterPro)
Cco09g0190 736 FunFam Homeobox-leucine zipper protein GLABRA 2 254 474 - -
Cco09g0190 736 Coils Coil 193 213 - -
Cco09g0190 736 MobiDBLite consensus disorder prediction 218 237 - -
Cco09g0190 736 ProSiteProfiles START domain profile. 245 478 IPR002913 GO:0008289(InterPro)
Cco09g0190 736 MobiDBLite consensus disorder prediction 76 92 - -
Cco09g0190 736 SUPERFAMILY Homeodomain-like 71 139 IPR009057 -
Cco09g0190 736 Coils Coil 139 166 - -
Cco09g0190 736 ProSiteProfiles 'Homeobox' domain profile. 80 140 IPR001356 GO:0003677(InterPro)
Cco09g0190 736 MobiDBLite consensus disorder prediction 44 92 - -
Cco09g0190 736 CDD START_ArGLABRA2_like 249 474 - -
Cco09g0190 736 SUPERFAMILY Bet v1-like 518 701 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0190 Cco-Chr9:1755239 Cco09g1176 Cco-Chr9:11579859 7.10E-108 dispersed
Cco07g1389 Cco-Chr7:27966644 Cco09g0190 Cco-Chr9:1755239 1.70E-208 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59888 PF01852 START 7.00E-52 CL0209 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0190 K09338 - csv:101218545 1282.7