Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco09g0206 ATGGCCACGAGGCAGTCTGCTACTGCTCCTCCGAAAGTTGGCGTTGGCCATTCTCGTCTTCATCCTTCTCTCTCCTCTCTTCTCTCTCTTAAAAACCAACAACATCTGTGCCTTCTGTTTCGGCCACTTTTCCACACAAAAAAGAATTTGTATGTATACGAATATTCACAACCTGGGTTTTCGTATATTCCATTCAAATCTCTGTACAAATCCCTCCATGTAACACCCAGAAAGGCACATGGGATTTCATCTGTTTTGGCAACAAATCTCAATCAAATACTATGGCGACATGAGCACAAACAACAGATAAACAAGCCAAAAAGGAAGAACTGGGTTTTCATATCATCAACAGCAACAGAATTCCTTGCAAGCAGTTGGGGTAGAGAATTTGTCGCTGGTGGATTTGGTGGCATCGCCGGCATAATCTCCGGCTACCCACTTGATACTCTTCGAGTAAGGCAACAGCAATCCATTTCTGGTTCTGCTTTGAAAATCTTTCGCAATATCATTGCCAACGATGGCGTTGCTGGTCTTTACAGAGGCATGGCTGCTCCTTTGGCCTCTGTCACTTTCCAGAACGCCGCCGTGTTTCAGATCTACGCCGTTCTTTCTCGGGCATTCGACTCCTCCTCCCAATCCAATGGTGACCCTCCAAGCTATAAGGCCGTGGCCTTTGGAGGATTTGGCACCGGAGCTCTTCAGAGCTTCATCTTGTCGCCGGTGGAGCTTGTGAAGATCCGCCTGCAATTGCAGAGTTCAAGCCATGCAGCAGCATCACACCAACAATTAATTTCTTCTTCTTCCCATAGAGGTCCATTGAGCGTCGCCAAAAGCATCTGCAAAACAGAAGGATTGAGAGGAATTTACAGAGGACTTACCATAACCATGCTGAGAGATGCACCTGCACACGGCATTTATTTCTGGACATATGAGTGCATGAGAGAGCAGTTTCATCCTGGCTGCCGGAAGACCGGCCAAGAGAGCGTCGGCACAATGCTGGTCGCCGGAGGGCTTGCCGGAGTTTCCAGCTGGGTTTTTTGTTATCCCTTGGATGTATTGAAGACTAGAATTCAGGGTCAGACAGAAAGTTCATCTCGAAAGTACAATGGAATTGTGGATTGTCTTAGCAAAAGTGTGAGAGAAGAGGGTTACAGAGTGCTATGGCGAGGGCTCGGGACAGCAGTTGCCAGAGCATTTGTGGTAAATGGGGCCATTTTTGCTGCTTATGAGATAACATTGAGGTGTTTGTTTAGCAATGGAAGCAATCAGACACAACAATAA 1281 46.84 MATRQSATAPPKVGVGHSRLHPSLSSLLSLKNQQHLCLLFRPLFHTKKNLYVYEYSQPGFSYIPFKSLYKSLHVTPRKAHGISSVLATNLNQILWRHEHKQQINKPKRKNWVFISSTATEFLASSWGREFVAGGFGGIAGIISGYPLDTLRVRQQQSISGSALKIFRNIIANDGVAGLYRGMAAPLASVTFQNAAVFQIYAVLSRAFDSSSQSNGDPPSYKAVAFGGFGTGALQSFILSPVELVKIRLQLQSSSHAAASHQQLISSSSHRGPLSVAKSICKTEGLRGIYRGLTITMLRDAPAHGIYFWTYECMREQFHPGCRKTGQESVGTMLVAGGLAGVSSWVFCYPLDVLKTRIQGQTESSSRKYNGIVDCLSKSVREEGYRVLWRGLGTAVARAFVVNGAIFAAYEITLRCLFSNGSNQTQQ 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
9 1835234 1836883 - CcPI632755_09g002060.1 Cco09g0206 186663
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco09g0206 426 ProSiteProfiles Solute carrier (Solcar) repeat profile. 127 206 IPR018108 -
Cco09g0206 426 Pfam Mitochondrial carrier protein 224 317 IPR018108 -
Cco09g0206 426 Pfam Mitochondrial carrier protein 327 417 IPR018108 -
Cco09g0206 426 Pfam Mitochondrial carrier protein 125 207 IPR018108 -
Cco09g0206 426 PRINTS Mitochondrial carrier protein signature 233 251 IPR002067 GO:0055085(InterPro)
Cco09g0206 426 PRINTS Mitochondrial carrier protein signature 336 358 IPR002067 GO:0055085(InterPro)
Cco09g0206 426 PRINTS Mitochondrial carrier protein signature 129 142 IPR002067 GO:0055085(InterPro)
Cco09g0206 426 PRINTS Mitochondrial carrier protein signature 289 307 IPR002067 GO:0055085(InterPro)
Cco09g0206 426 Gene3D Mitochondrial carrier domain 64 220 IPR023395 -
Cco09g0206 426 ProSiteProfiles Solute carrier (Solcar) repeat profile. 218 316 IPR018108 -
Cco09g0206 426 SUPERFAMILY Mitochondrial carrier 126 410 IPR023395 -
Cco09g0206 426 Gene3D Mitochondrial carrier domain 221 425 IPR023395 -
Cco09g0206 426 ProSiteProfiles Solute carrier (Solcar) repeat profile. 327 415 IPR018108 -
Cco09g0206 426 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 123 416 IPR050567 GO:0006810(PANTHER)|GO:0022857(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco09g0206 Cco-Chr9:1835234 Cco10g2213 Cco-Chr10:35174602 3.20E-20 dispersed
Cco07g1383 Cco-Chr7:27937686 Cco09g0206 Cco-Chr9:1835234 5.60E-123 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco09g0206 K15109 - csv:101222165 534.258